Wall clock time and date at job start Tue Mar 31 2020 11:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29874 * 124.83278 * 2 1 4 4 C 1.36134 * 108.76556 * 179.97438 * 3 2 1 5 5 C 1.39245 * 133.76172 * 179.97438 * 4 3 2 6 6 C 1.39248 * 119.46464 * 180.02562 * 5 4 3 7 7 C 1.47589 * 119.95537 * 180.02562 * 6 5 4 8 8 O 1.21485 * 120.00508 * 359.97438 * 7 6 5 9 9 O 1.34731 * 119.99738 * 179.97438 * 7 6 5 10 10 C 1.45206 * 116.99944 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47162 * 300.00216 * 11 10 9 13 13 C 1.52997 * 109.46984 * 60.00261 * 11 10 9 14 14 C 1.53000 * 109.47113 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.47223 * 179.97438 * 14 11 10 16 16 H 1.07995 * 119.99804 * 0.02562 * 15 14 11 17 17 C 1.37872 * 120.00012 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00121 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00112 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47101 * 89.99965 * 19 17 15 21 21 H 1.48493 * 109.47445 * 210.00328 * 19 17 15 22 22 H 1.48500 * 109.47082 * 330.00160 * 19 17 15 23 23 C 1.40094 * 120.08537 * 0.02562 * 6 5 4 24 24 C 1.36515 * 120.46769 * 359.97438 * 23 6 5 25 25 C 1.38911 * 120.19797 * 359.97438 * 24 23 6 26 26 O 1.34253 * 124.83777 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47035 * 90.00268 * 1 2 3 28 28 H 1.09008 * 109.47001 * 209.99858 * 1 2 3 29 29 H 1.08994 * 109.47215 * 329.99706 * 1 2 3 30 30 H 1.08010 * 120.26593 * 359.97438 * 5 4 3 31 31 H 1.08997 * 109.46868 * 299.99689 * 10 9 7 32 32 H 1.09000 * 109.47047 * 60.00155 * 10 9 7 33 33 H 1.09000 * 109.47489 * 60.00036 * 12 11 10 34 34 H 1.08999 * 109.47505 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47136 * 299.99940 * 12 11 10 36 36 H 1.08997 * 109.47739 * 59.99731 * 13 11 10 37 37 H 1.08999 * 109.47150 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47000 * 299.99556 * 13 11 10 39 39 H 1.08994 * 109.46982 * 300.00602 * 14 11 10 40 40 H 1.09005 * 109.46825 * 59.99751 * 14 11 10 41 41 H 0.96997 * 119.99786 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.77055 * 180.27440 * 23 6 5 43 43 H 1.07995 * 119.89879 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6893 0.0006 5 6 4.7607 1.3891 0.0004 6 6 5.9622 0.6852 0.0006 7 6 7.2445 1.4160 0.0010 8 8 7.2513 2.6308 0.0006 9 8 8.4075 0.7358 0.0017 10 6 9.6297 1.5198 0.0015 11 6 10.8378 0.5809 0.0031 12 6 10.7973 -0.3002 1.2532 13 6 10.7985 -0.3028 -1.2453 14 6 12.1256 1.4070 0.0022 15 6 13.3156 0.4823 0.0044 16 1 13.1680 -0.5875 0.0058 17 6 14.5926 1.0021 0.0045 18 7 15.6310 0.1951 0.0059 19 14 14.8478 2.8526 0.0028 20 1 14.9146 3.3444 1.4024 21 1 16.1168 3.1767 -0.6969 22 1 13.7146 3.5079 -0.6985 23 6 5.9554 -0.7157 0.0005 24 6 4.7754 -1.4022 0.0007 25 6 3.5677 -0.7158 0.0015 26 8 2.2739 -1.1019 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 4.7625 2.4692 -0.0008 31 1 9.6583 2.1478 -0.8889 32 1 9.6579 2.1490 0.8911 33 1 9.8799 -0.8887 1.2534 34 1 11.6582 -0.9688 1.2546 35 1 10.8253 0.3294 2.1425 36 1 10.8273 0.3249 -2.1359 37 1 11.6594 -0.9713 -1.2444 38 1 9.8811 -0.8913 -1.2450 39 1 12.1542 2.0344 -0.8886 40 1 12.1538 2.0369 0.8913 41 1 16.5294 0.5609 0.0057 42 1 6.8902 -1.2565 0.0052 43 1 4.7809 -2.4821 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798878388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:40 Heat of formation + Delta-G solvation = -82.009416 kcal Electronic energy + Delta-G solvation = -25525.607538 eV Core-core repulsion = 21729.298528 eV Total energy + Delta-G solvation = -3796.309010 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.45603 -41.67060 -39.35369 -38.49144 -36.94130 -36.06941 -34.39976 -32.81480 -32.11143 -30.03217 -29.40717 -27.95071 -27.89737 -25.73723 -24.39446 -23.55636 -22.74383 -22.36556 -19.98799 -19.56168 -18.89423 -18.77190 -18.05824 -17.87661 -17.48338 -17.27502 -16.26480 -15.83505 -15.46077 -15.38497 -15.32389 -14.83833 -14.70531 -14.29882 -14.23232 -14.13574 -14.04532 -13.82810 -13.55137 -13.41555 -13.04528 -12.85581 -12.75844 -12.67002 -12.40696 -12.26806 -12.14402 -11.93384 -11.83909 -11.71657 -11.65781 -11.35187 -11.21338 -10.93325 -10.70870 -10.12700 -9.69508 -8.22338 -6.22966 -0.64874 -0.43689 1.16367 1.29321 1.36072 1.38458 1.38655 1.46416 1.48485 2.38703 2.45627 2.73448 3.12536 3.22768 3.43247 3.75241 3.83660 3.89965 3.94254 4.01450 4.09500 4.19634 4.43536 4.58072 4.58616 4.61563 4.62950 4.68588 4.73815 4.86739 4.96615 4.99430 5.02955 5.05030 5.13807 5.20831 5.26280 5.31512 5.37690 5.39686 5.42366 5.55655 5.66794 5.75964 6.37313 6.40861 6.58456 6.83846 7.39294 8.93091 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038517 B = 0.002299 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.773665 B =12177.963756 C =12703.073299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.259 3.741 3 N -0.513 5.513 4 C -0.011 4.011 5 C -0.005 4.005 6 C -0.125 4.125 7 C 0.511 3.489 8 O -0.537 6.537 9 O -0.334 6.334 10 C 0.085 3.915 11 C -0.047 4.047 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.004 4.004 15 C -0.502 4.502 16 H 0.053 0.947 17 C 0.005 3.995 18 N -0.949 5.949 19 Si 0.934 3.066 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.251 1.251 23 C -0.036 4.036 24 C -0.086 4.086 25 C 0.028 3.972 26 O -0.212 6.212 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.263 0.737 42 H 0.179 0.821 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.269 -4.109 -0.040 32.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 N -0.243 5.243 4 C -0.121 4.121 5 C -0.024 4.024 6 C -0.128 4.128 7 C 0.358 3.642 8 O -0.428 6.428 9 O -0.249 6.249 10 C 0.012 3.988 11 C -0.048 4.048 12 C -0.180 4.180 13 C -0.180 4.180 14 C -0.042 4.042 15 C -0.540 4.540 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.591 5.591 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.175 1.175 23 C -0.054 4.054 24 C -0.105 4.105 25 C -0.024 4.024 26 O -0.104 6.104 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.196 0.804 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -32.256 -3.133 -0.041 32.407 hybrid contribution 1.326 0.609 0.014 1.459 sum -30.929 -2.524 -0.027 31.032 Atomic orbital electron populations 1.20818 0.76837 1.07385 1.07087 1.27667 0.98328 0.77114 0.92126 1.70673 1.00734 1.30388 1.22468 1.19767 0.92271 0.92145 1.07935 1.20302 0.87760 1.00807 0.93524 1.18845 0.88954 0.94645 1.10317 1.21206 0.85153 0.85684 0.72201 1.90834 1.88587 1.16094 1.47303 1.86492 1.14284 1.40966 1.83189 1.23266 0.79954 0.93385 1.02225 1.20453 0.91118 0.95516 0.97664 1.21678 1.01470 0.99241 0.95657 1.21676 1.01472 0.99221 0.95667 1.19587 0.92657 0.95497 0.96438 1.21303 0.89983 0.94218 1.48515 0.92895 1.25834 0.96111 1.02123 0.95039 1.70036 0.98839 1.36757 1.53444 0.85894 0.77953 0.81337 0.78889 1.19639 1.21429 1.17471 1.21299 0.99655 0.91419 0.93065 1.19962 0.85579 1.02457 1.02481 1.20908 0.84922 0.94038 1.02510 1.84524 1.14911 1.36745 1.74248 0.86126 0.86294 0.86570 0.84131 0.91410 0.91349 0.91079 0.93545 0.93641 0.93676 0.93537 0.91076 0.96378 0.96528 0.92809 0.80384 0.80306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 71.23 0.75 0.53 16 2 C 0.26 3.98 8.23 88.40 0.73 4.70 16 3 N -0.51 -11.47 11.34 -296.34 -3.36 -14.83 16 4 C -0.01 -0.26 7.23 39.27 0.28 0.03 16 5 C 0.00 -0.12 9.64 22.76 0.22 0.10 16 6 C -0.13 -2.92 5.87 -20.12 -0.12 -3.03 16 7 C 0.51 14.67 7.89 70.29 0.55 15.22 16 8 O -0.54 -18.56 16.12 19.89 0.32 -18.24 16 9 O -0.33 -9.48 8.11 -56.41 -0.46 -9.94 16 10 C 0.09 2.77 4.33 71.98 0.31 3.08 16 11 C -0.05 -1.73 0.61 -52.18 -0.03 -1.77 16 12 C -0.12 -4.30 8.08 71.98 0.58 -3.72 16 13 C -0.12 -4.30 8.08 71.98 0.58 -3.72 16 14 C 0.00 -0.20 3.11 29.85 0.09 -0.10 16 15 C -0.50 -27.29 8.20 25.60 0.21 -27.08 16 16 H 0.05 3.11 5.92 -2.91 -0.02 3.09 16 17 C 0.01 0.30 5.47 84.65 0.46 0.77 16 18 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 19 Si 0.93 44.13 27.47 68.60 1.88 46.02 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 23 C -0.04 -0.62 9.54 22.32 0.21 -0.41 16 24 C -0.09 -1.28 9.99 22.03 0.22 -1.06 16 25 C 0.03 0.54 7.43 22.98 0.17 0.71 16 26 O -0.21 -3.65 10.77 -9.24 -0.10 -3.75 16 27 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.12 -0.12 8.14 -2.38 -0.02 -0.14 16 29 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.14 3.62 7.64 -2.91 -0.02 3.60 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.07 2.04 7.68 -2.39 -0.02 2.03 16 34 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 38 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 39 H 0.02 0.81 7.20 -2.39 -0.02 0.80 16 40 H 0.02 0.73 7.57 -2.38 -0.02 0.72 16 41 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.18 2.38 7.58 -2.91 -0.02 2.35 16 43 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -72.70 360.59 4.78 -67.92 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.97 Total: 6.69 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 5.23 Total: -15.76 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -3.06 Total: -72.94 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.24 Total: -31.93 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -72.70 4.78 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798878388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.091 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds