Wall clock time and date at job start Tue Mar 31 2020 11:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47078 * 240.41218 * 3 2 1 5 5 C 1.52999 * 109.46908 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47182 * 55.00724 * 5 4 3 7 7 O 1.42894 * 109.47492 * 295.00391 * 5 4 3 8 8 C 1.53006 * 109.47233 * 175.00008 * 5 4 3 9 9 N 1.46498 * 109.47321 * 185.00125 * 8 5 4 10 10 C 1.34775 * 119.99904 * 180.02562 * 9 8 5 11 11 O 1.21280 * 120.00014 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00040 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.47436 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93634 * 269.73208 * 13 12 10 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31556 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47529 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47049 * 119.99936 * 22 20 18 25 25 H 1.48497 * 109.46877 * 239.99598 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 4.44644 * 5.63449 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46681 * 120.41532 * 3 2 1 30 30 H 1.08996 * 109.47222 * 0.42173 * 3 2 1 31 31 H 1.09002 * 109.47108 * 60.00576 * 4 3 2 32 32 H 1.08992 * 109.47390 * 300.00578 * 4 3 2 33 33 H 0.96706 * 114.00165 * 299.99937 * 7 5 4 34 34 H 1.09007 * 109.46497 * 65.00409 * 8 5 4 35 35 H 1.08996 * 109.47410 * 305.00896 * 8 5 4 36 36 H 0.96999 * 119.99614 * 0.02562 * 9 8 5 37 37 H 1.08999 * 109.47119 * 60.00120 * 12 10 9 38 38 H 1.09004 * 109.47334 * 300.00265 * 12 10 9 39 39 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 40 40 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 41 41 H 0.97002 * 119.99992 * 180.02562 * 21 20 18 42 42 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 43 43 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7131 1.2544 5 6 4.6856 0.7143 1.2540 6 1 5.0484 1.1559 0.3258 7 8 5.1631 -0.6282 1.3614 8 6 5.1953 1.5335 2.4416 9 7 6.6552 1.6348 2.3744 10 6 7.3279 2.3152 3.3236 11 8 6.7246 2.8431 4.2336 12 6 8.8297 2.4189 3.2548 13 6 9.3317 3.2258 4.4244 14 6 9.4678 4.5972 4.3091 15 6 9.9221 5.3401 5.3810 16 6 10.2536 4.7071 6.5719 17 8 10.7066 5.4337 7.6252 18 6 10.9013 4.7745 8.7852 19 1 10.7766 3.7025 8.8245 20 6 11.2616 5.4729 9.9275 21 7 11.4130 6.7789 9.8797 22 14 11.5319 4.5594 11.5343 23 1 11.2999 3.1079 11.3237 24 1 12.9258 4.7762 11.9985 25 1 10.5845 5.0682 12.5584 26 6 10.1212 3.3290 6.6827 27 6 9.6610 2.5924 5.6090 28 1 -1.0501 0.0001 -0.0002 29 1 3.0090 0.5211 -0.8863 30 1 3.0098 -1.0268 -0.0076 31 1 2.7926 0.1927 2.1406 32 1 2.7918 1.7405 1.2619 33 1 4.8784 -1.0838 2.1654 34 1 4.9075 1.0428 3.3715 35 1 4.7598 2.5321 2.4079 36 1 7.1377 1.2121 1.6467 37 1 9.1178 2.9095 2.3251 38 1 9.2649 1.4201 3.2885 39 1 9.2148 5.0883 3.3810 40 1 10.0241 6.4115 5.2917 41 1 11.6654 7.2674 10.6788 42 1 10.3785 2.8339 7.6074 43 1 9.5574 1.5208 5.6947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799076868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:11 Heat of formation + Delta-G solvation = -50.170645 kcal Electronic energy + Delta-G solvation = -24427.332341 eV Core-core repulsion = 20632.403964 eV Total energy + Delta-G solvation = -3794.928377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.92532 -38.93351 -38.31665 -36.45285 -35.12290 -34.36012 -32.44847 -31.96331 -31.30716 -30.09983 -28.88680 -26.57289 -25.17291 -24.11693 -22.14165 -21.92020 -21.03117 -19.97660 -18.53093 -17.93283 -17.43365 -16.87593 -16.76087 -16.69126 -15.67365 -15.35551 -14.92289 -14.65159 -14.53722 -14.25238 -14.17248 -13.67262 -13.52987 -13.39225 -13.34442 -13.17369 -12.83148 -12.65093 -12.35887 -11.97998 -11.78212 -11.45281 -11.42987 -11.23653 -10.93852 -10.81680 -10.71637 -10.55821 -10.52988 -10.40404 -10.38485 -9.68225 -9.27412 -9.16258 -8.78138 -8.09718 -7.11123 -6.40510 -3.98933 2.29253 2.30758 2.38462 2.43314 2.79619 3.11065 3.16377 3.18901 3.22466 3.84852 3.93816 4.00718 4.24388 4.43671 4.56804 4.61505 4.84158 4.90765 5.04139 5.11828 5.13356 5.27908 5.31818 5.34006 5.38424 5.52392 5.58326 5.60891 5.67186 5.71885 5.78327 5.90112 6.26886 6.32291 6.47219 6.75666 6.96847 7.10390 7.10856 7.20655 7.29174 7.42391 7.47149 7.50942 7.89425 8.05067 8.34542 9.05427 9.76457 10.77792 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.001870 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.707257 B =14968.016421 C =15316.164059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C -0.009 4.009 4 C -0.145 4.145 5 C 0.097 3.903 6 H 0.109 0.891 7 O -0.558 6.558 8 C 0.088 3.912 9 N -0.736 5.736 10 C 0.508 3.492 11 O -0.522 6.522 12 C -0.079 4.079 13 C -0.170 4.170 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.057 4.057 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.379 0.621 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -14.666 -19.941 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.189 4.189 3 C -0.045 4.045 4 C -0.183 4.183 5 C 0.038 3.962 6 H 0.126 0.874 7 O -0.364 6.364 8 C -0.037 4.037 9 N -0.391 5.391 10 C 0.295 3.705 11 O -0.396 6.396 12 C -0.119 4.119 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.252 4.252 27 C -0.075 4.075 28 H 0.233 0.767 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.227 0.773 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.112 -13.686 -19.623 27.776 hybrid contribution -0.306 -0.768 1.037 1.326 sum -14.418 -14.454 -18.586 27.608 Atomic orbital electron populations 1.24959 0.96054 1.01131 1.00643 1.23180 0.94642 1.00429 1.00642 1.18655 0.84474 1.02701 0.98677 1.22190 0.95250 1.02450 0.98454 1.22192 0.92506 0.82884 0.98658 0.87369 1.86579 1.77022 1.25642 1.47158 1.21991 0.81799 1.01168 0.98734 1.45974 1.06826 1.56798 1.29488 1.21093 0.90618 0.77558 0.81267 1.90751 1.70149 1.45097 1.33574 1.20397 0.90657 1.01647 0.99203 1.18645 1.09859 0.93605 0.95024 1.20401 0.97542 0.92789 0.97106 1.20156 1.08958 0.99543 0.92417 1.19382 0.91018 0.90373 0.88957 1.83974 1.71345 1.36030 1.16917 1.21380 1.48248 0.92711 0.84318 0.89037 1.25285 0.96747 0.95777 0.98767 1.70052 1.43970 1.06263 1.29586 0.85648 0.78260 0.79118 0.80395 1.19122 1.20175 1.20178 1.21109 1.09880 0.94018 1.00163 1.20509 0.96650 0.98109 0.92232 0.76683 0.89472 0.88809 0.90682 0.90082 0.77330 0.91298 0.90698 0.76391 0.88984 0.88971 0.87395 0.86552 0.92137 0.85594 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.19 -1.41 13.34 -37.12 -0.50 -1.90 16 3 C -0.01 -0.05 5.60 -29.52 -0.17 -0.21 16 4 C -0.15 -0.72 4.85 -26.73 -0.13 -0.85 16 5 C 0.10 0.50 3.00 -26.73 -0.08 0.42 16 6 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 7 O -0.56 -3.15 12.82 -35.23 -0.45 -3.60 16 8 C 0.09 0.71 5.31 -4.04 -0.02 0.68 16 9 N -0.74 -6.82 5.50 -60.29 -0.33 -7.15 16 10 C 0.51 6.93 7.82 -10.99 -0.09 6.84 16 11 O -0.52 -9.83 16.03 5.56 0.09 -9.75 16 12 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 13 C -0.17 -3.01 4.38 -104.58 -0.46 -3.47 16 14 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 15 C -0.19 -4.26 9.99 -39.39 -0.39 -4.65 16 16 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 17 O -0.18 -5.28 9.76 0.07 0.00 -5.28 16 18 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 22 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.23 -5.30 9.17 -39.39 -0.36 -5.67 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 H 0.22 0.81 7.80 -54.08 -0.42 0.39 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.48 7.82 -51.93 -0.41 0.07 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 1.27 9.05 45.56 0.41 1.68 16 34 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.40 2.71 8.47 -40.82 -0.35 2.36 16 37 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 43 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -36.49 379.70 -6.97 -43.46 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.11 Total: 5.79 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.62 Total: -20.09 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.43 Total: -32.23 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.36 Total: -18.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.49 -6.97 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799076868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.710 kcal (2) G-P(sol) polarization free energy of solvation -36.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds