Wall clock time and date at job start Tue Mar 31 2020 11:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47078 * 240.41218 * 3 2 1 5 5 C 1.52999 * 109.46908 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47182 * 55.00724 * 5 4 3 7 7 O 1.42894 * 109.47492 * 295.00391 * 5 4 3 8 8 C 1.53006 * 109.47233 * 175.00008 * 5 4 3 9 9 N 1.46498 * 109.47321 * 185.00125 * 8 5 4 10 10 C 1.34775 * 119.99904 * 180.02562 * 9 8 5 11 11 O 1.21280 * 120.00014 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00040 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.47436 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93634 * 269.73208 * 13 12 10 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31556 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47529 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47049 * 119.99936 * 22 20 18 25 25 H 1.48497 * 109.46877 * 239.99598 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 4.44644 * 5.63449 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46681 * 120.41532 * 3 2 1 30 30 H 1.08996 * 109.47222 * 0.42173 * 3 2 1 31 31 H 1.09002 * 109.47108 * 60.00576 * 4 3 2 32 32 H 1.08992 * 109.47390 * 300.00578 * 4 3 2 33 33 H 0.96706 * 114.00165 * 299.99937 * 7 5 4 34 34 H 1.09007 * 109.46497 * 65.00409 * 8 5 4 35 35 H 1.08996 * 109.47410 * 305.00896 * 8 5 4 36 36 H 0.96999 * 119.99614 * 0.02562 * 9 8 5 37 37 H 1.08999 * 109.47119 * 60.00120 * 12 10 9 38 38 H 1.09004 * 109.47334 * 300.00265 * 12 10 9 39 39 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 40 40 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 41 41 H 0.97002 * 119.99992 * 180.02562 * 21 20 18 42 42 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 43 43 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7131 1.2544 5 6 4.6856 0.7143 1.2540 6 1 5.0484 1.1559 0.3258 7 8 5.1631 -0.6282 1.3614 8 6 5.1953 1.5335 2.4416 9 7 6.6552 1.6348 2.3744 10 6 7.3279 2.3152 3.3236 11 8 6.7246 2.8431 4.2336 12 6 8.8297 2.4189 3.2548 13 6 9.3317 3.2258 4.4244 14 6 9.4678 4.5972 4.3091 15 6 9.9221 5.3401 5.3810 16 6 10.2536 4.7071 6.5719 17 8 10.7066 5.4337 7.6252 18 6 10.9013 4.7745 8.7852 19 1 10.7766 3.7025 8.8245 20 6 11.2616 5.4729 9.9275 21 7 11.4130 6.7789 9.8797 22 14 11.5319 4.5594 11.5343 23 1 11.2999 3.1079 11.3237 24 1 12.9258 4.7762 11.9985 25 1 10.5845 5.0682 12.5584 26 6 10.1212 3.3290 6.6827 27 6 9.6610 2.5924 5.6090 28 1 -1.0501 0.0001 -0.0002 29 1 3.0090 0.5211 -0.8863 30 1 3.0098 -1.0268 -0.0076 31 1 2.7926 0.1927 2.1406 32 1 2.7918 1.7405 1.2619 33 1 4.8784 -1.0838 2.1654 34 1 4.9075 1.0428 3.3715 35 1 4.7598 2.5321 2.4079 36 1 7.1377 1.2121 1.6467 37 1 9.1178 2.9095 2.3251 38 1 9.2649 1.4201 3.2885 39 1 9.2148 5.0883 3.3810 40 1 10.0241 6.4115 5.2917 41 1 11.6654 7.2674 10.6788 42 1 10.3785 2.8339 7.6074 43 1 9.5574 1.5208 5.6947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799076868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:10 Heat of formation + Delta-G solvation = -77.427166 kcal Electronic energy + Delta-G solvation = -24428.514273 eV Core-core repulsion = 20632.403964 eV Total energy + Delta-G solvation = -3796.110308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09610 -40.43528 -39.07226 -38.13439 -35.63443 -35.17127 -34.39454 -32.95100 -32.30007 -31.76918 -29.69294 -28.00316 -26.94835 -24.85469 -23.62845 -22.62089 -22.47565 -21.12124 -19.84195 -19.01508 -18.83984 -18.10278 -17.53237 -17.29256 -16.57851 -16.55046 -16.26024 -15.90455 -15.71021 -15.54331 -15.42852 -15.08227 -14.86699 -14.50278 -14.40510 -14.16614 -13.84319 -13.70991 -13.63311 -13.38865 -12.97823 -12.70810 -12.48237 -12.40583 -12.26975 -12.23314 -12.09934 -11.87643 -11.40086 -11.17264 -11.06293 -10.97650 -10.82596 -10.65901 -10.04452 -9.75610 -8.89165 -8.47505 -6.15656 0.62166 0.68161 1.33729 1.42483 1.52629 1.76345 1.85515 1.92285 2.17352 2.28729 2.85527 3.17716 3.42101 3.53100 3.53502 3.74631 3.89211 4.01414 4.06753 4.16107 4.19477 4.26883 4.33950 4.51118 4.52019 4.60860 4.71547 4.74133 4.77800 4.81803 4.88624 5.10182 5.15282 5.18566 5.21191 5.24468 5.31523 5.51293 5.57434 5.72269 5.79105 6.03124 6.24160 6.65981 6.71421 6.80003 6.97151 7.39957 7.78728 8.76227 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.001870 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.707257 B =14968.016421 C =15316.164059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.007 4.007 4 C -0.139 4.139 5 C 0.115 3.885 6 H 0.122 0.878 7 O -0.565 6.565 8 C 0.085 3.915 9 N -0.714 5.714 10 C 0.509 3.491 11 O -0.584 6.584 12 C -0.078 4.078 13 C -0.146 4.146 14 C -0.058 4.058 15 C -0.207 4.207 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.269 1.269 26 C -0.245 4.245 27 C -0.061 4.061 28 H 0.238 0.762 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.389 0.611 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.419 0.581 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.872 -17.674 -22.574 32.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.178 4.178 5 C 0.055 3.945 6 H 0.139 0.861 7 O -0.372 6.372 8 C -0.039 4.039 9 N -0.368 5.368 10 C 0.296 3.704 11 O -0.463 6.463 12 C -0.117 4.117 13 C -0.147 4.147 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.264 4.264 27 C -0.079 4.079 28 H 0.254 0.746 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.238 0.762 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.256 0.744 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.922 -16.764 -22.359 31.680 hybrid contribution -0.238 0.016 1.477 1.496 sum -15.160 -16.748 -20.882 30.763 Atomic orbital electron populations 1.25708 0.97096 1.00731 1.00232 1.23821 0.95734 1.00902 1.01122 1.18713 0.83477 1.03066 0.99095 1.22114 0.95071 1.02225 0.98350 1.22033 0.92325 0.82418 0.97690 0.86062 1.86564 1.77131 1.25570 1.47958 1.22094 0.80934 1.01159 0.99733 1.45768 1.07392 1.54993 1.28598 1.21181 0.90960 0.77176 0.81036 1.90757 1.71307 1.48056 1.36197 1.20528 0.89934 1.03070 0.98179 1.19294 1.05670 0.93681 0.96028 1.20892 0.95858 0.93521 0.97348 1.20452 1.09440 0.99968 0.92744 1.19944 0.93079 0.91733 0.89163 1.83933 1.74441 1.37668 1.18097 1.21867 1.48800 0.93379 0.84981 0.88270 1.26616 0.96116 0.96767 1.02651 1.70196 1.46478 1.08341 1.30969 0.84511 0.78596 0.78204 0.74739 1.17565 1.18998 1.19413 1.21232 1.10523 0.93362 1.01262 1.20941 0.95507 0.99768 0.91669 0.74592 0.88468 0.88430 0.90876 0.90406 0.76171 0.92293 0.91673 0.74374 0.85081 0.85430 0.83473 0.86995 0.91845 0.86546 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.76 19.25 74.32 1.43 -1.32 16 2 C -0.22 -2.92 13.34 31.12 0.42 -2.51 16 3 C -0.01 -0.06 5.60 28.79 0.16 0.10 16 4 C -0.14 -1.10 4.85 30.59 0.15 -0.95 16 5 C 0.11 0.84 3.00 30.60 0.09 0.93 16 6 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 7 O -0.56 -4.44 12.82 -148.98 -1.91 -6.35 16 8 C 0.09 1.16 5.31 86.38 0.46 1.62 16 9 N -0.71 -10.37 5.50 -463.06 -2.55 -12.92 16 10 C 0.51 11.97 7.82 87.66 0.69 12.66 16 11 O -0.58 -20.92 16.03 -3.03 -0.05 -20.97 16 12 C -0.08 -1.53 5.83 29.10 0.17 -1.36 16 13 C -0.15 -4.69 4.38 -19.83 -0.09 -4.77 16 14 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 15 C -0.21 -9.43 9.99 22.39 0.22 -9.20 16 16 C 0.11 5.89 6.65 22.58 0.15 6.04 16 17 O -0.23 -14.84 9.76 -22.66 -0.22 -15.06 16 18 C -0.41 -25.22 9.49 67.92 0.64 -24.57 16 19 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 21 N -0.92 -58.27 13.67 21.61 0.30 -57.97 16 22 Si 1.02 44.38 29.55 68.60 2.03 46.41 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 27 C -0.06 -2.23 9.69 22.25 0.22 -2.02 16 28 H 0.24 1.41 7.80 -4.41 -0.03 1.38 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.77 7.82 -2.39 -0.02 0.75 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.39 1.45 9.05 -74.05 -0.67 0.78 16 34 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.42 3.46 8.47 -92.71 -0.79 2.68 16 37 H 0.13 1.69 8.08 -2.39 -0.02 1.67 16 38 H 0.13 1.75 8.08 -2.38 -0.02 1.73 16 39 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 40 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 41 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.12 5.51 5.64 -2.91 -0.02 5.50 16 43 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -86.74 379.70 2.78 -83.97 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.42 Total: 22.29 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 5.60 Total: -39.39 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.25 Total: -70.89 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -2.18 Total: -42.38 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -86.74 2.78 -83.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799076868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.541 kcal (2) G-P(sol) polarization free energy of solvation -86.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds