Wall clock time and date at job start Tue Mar 31 2020 11:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47420 * 3.57579 * 3 2 1 5 5 C 1.53001 * 109.47255 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47056 * 305.00078 * 5 4 3 7 7 O 1.42901 * 109.46902 * 64.99711 * 5 4 3 8 8 C 1.52995 * 109.47391 * 184.99812 * 5 4 3 9 9 N 1.46498 * 109.47240 * 179.97438 * 8 5 4 10 10 C 1.34780 * 119.99938 * 180.02562 * 9 8 5 11 11 O 1.21284 * 119.99717 * 359.97438 * 10 9 8 12 12 C 1.50695 * 119.99941 * 180.02562 * 10 9 8 13 13 C 1.50704 * 109.47309 * 179.97438 * 12 10 9 14 14 C 1.38304 * 119.92918 * 269.73061 * 13 12 10 15 15 C 1.38103 * 120.06357 * 179.72277 * 14 13 12 16 16 C 1.38877 * 119.93139 * 0.56804 * 15 14 13 17 17 O 1.35750 * 120.07145 * 179.68224 * 16 15 14 18 18 C 1.34822 * 117.00274 * 174.48671 * 17 16 15 19 19 H 1.08010 * 120.00276 * 5.05664 * 18 17 16 20 20 C 1.38657 * 120.00131 * 185.05855 * 18 17 16 21 21 N 1.31549 * 119.99980 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00229 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47187 * 89.99713 * 22 20 18 24 24 H 1.48490 * 109.47220 * 209.99909 * 22 20 18 25 25 H 1.48504 * 109.46630 * 330.00111 * 22 20 18 26 26 C 1.38885 * 119.86315 * 359.70588 * 16 15 14 27 27 C 1.38099 * 119.92736 * 359.97438 * 26 16 15 28 28 H 4.44652 * 5.63341 * 180.02562 * 4 1 2 29 29 H 1.09007 * 109.46785 * 243.57179 * 3 2 1 30 30 H 1.09002 * 109.47116 * 123.58024 * 3 2 1 31 31 H 1.08997 * 109.47474 * 60.00018 * 4 3 2 32 32 H 1.09005 * 109.47096 * 299.99851 * 4 3 2 33 33 H 0.96703 * 114.00224 * 60.00678 * 7 5 4 34 34 H 1.08996 * 109.47238 * 300.00155 * 8 5 4 35 35 H 1.09004 * 109.46882 * 60.00082 * 8 5 4 36 36 H 0.96996 * 120.00023 * 0.02562 * 9 8 5 37 37 H 1.08996 * 109.47227 * 299.99976 * 12 10 9 38 38 H 1.09004 * 109.47018 * 59.99980 * 12 10 9 39 39 H 1.07990 * 119.96642 * 359.97117 * 14 13 12 40 40 H 1.07999 * 120.03179 * 180.26577 * 15 14 13 41 41 H 0.97005 * 120.00580 * 180.02562 * 21 20 18 42 42 H 1.07994 * 120.03350 * 179.97438 * 26 16 15 43 43 H 1.08001 * 119.96146 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4387 -0.0900 5 6 4.6867 -1.4381 -0.0893 6 1 5.0501 -0.7970 -0.8924 7 8 5.1622 -0.9458 1.1651 8 6 5.1975 -2.8641 -0.3044 9 7 6.6625 -2.8633 -0.3043 10 6 7.3370 -4.0171 -0.4789 11 8 6.7311 -5.0560 -0.6355 12 6 8.8439 -4.0163 -0.4783 13 6 9.3471 -5.4210 -0.6902 14 6 9.5824 -6.2413 0.3982 15 6 10.0380 -7.5309 0.2069 16 6 10.2712 -7.9998 -1.0794 17 8 10.7252 -9.2648 -1.2703 18 6 10.8215 -9.6948 -2.5445 19 1 10.6216 -9.0157 -3.3603 20 6 11.1772 -11.0088 -2.8078 21 7 11.4211 -11.8359 -1.8143 22 14 11.3114 -11.6044 -4.5732 23 1 12.6971 -11.3923 -5.0632 24 1 10.9808 -13.0508 -4.6342 25 1 10.3630 -10.8434 -5.4257 26 6 10.0393 -7.1717 -2.1700 27 6 9.5774 -5.8853 -1.9724 28 1 -1.0498 -0.0004 -0.0002 29 1 3.0091 0.4582 0.9203 30 1 3.0091 0.5692 -0.8562 31 1 2.7936 -1.8963 -1.0102 32 1 2.7937 -2.0073 0.7663 33 1 4.8769 -1.4690 1.9267 34 1 4.8341 -3.5052 0.4988 35 1 4.8347 -3.2395 -1.2613 36 1 7.1470 -2.0325 -0.1787 37 1 9.2073 -3.3749 -1.2811 38 1 9.2067 -3.6414 0.4788 39 1 9.4058 -5.8743 1.3983 40 1 10.2175 -8.1724 1.0570 41 1 11.6703 -12.7551 -1.9984 42 1 10.2200 -7.5334 -3.1713 43 1 9.3973 -5.2408 -2.8201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799076869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:15 Heat of formation + Delta-G solvation = -50.138087 kcal Electronic energy + Delta-G solvation = -24430.805965 eV Core-core repulsion = 20635.879000 eV Total energy + Delta-G solvation = -3794.926965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.92583 -38.93454 -38.31354 -36.45094 -35.12691 -34.33665 -32.44801 -31.97043 -31.30659 -30.09942 -28.89165 -26.57392 -25.17014 -24.11225 -22.12824 -21.91919 -21.02728 -19.97575 -18.53247 -17.93083 -17.43053 -16.90222 -16.75800 -16.66571 -15.67674 -15.36713 -14.90583 -14.63932 -14.54416 -14.30459 -14.12966 -13.67249 -13.55928 -13.38650 -13.29222 -13.16796 -12.87277 -12.64602 -12.34169 -11.98102 -11.78029 -11.45670 -11.41992 -11.22681 -10.93837 -10.80641 -10.72090 -10.57257 -10.52933 -10.40269 -10.39218 -9.68301 -9.27572 -9.15862 -8.77690 -8.09617 -7.11065 -6.40218 -3.98712 2.29424 2.30855 2.38492 2.43304 2.79836 3.11251 3.16329 3.18726 3.22012 3.86131 3.93592 4.00930 4.24711 4.43327 4.57079 4.61689 4.84136 4.91303 5.04357 5.11824 5.13550 5.28463 5.31894 5.34186 5.38469 5.53141 5.58426 5.61020 5.67037 5.72123 5.78265 5.90333 6.26941 6.32589 6.47281 6.75806 6.96966 7.10067 7.10666 7.20664 7.29172 7.42417 7.47717 7.51219 7.89554 8.05118 8.34909 9.05550 9.76548 10.77974 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.001882 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.812570 B =14871.148766 C =15449.587064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C -0.009 4.009 4 C -0.145 4.145 5 C 0.097 3.903 6 H 0.108 0.892 7 O -0.558 6.558 8 C 0.087 3.913 9 N -0.736 5.736 10 C 0.508 3.492 11 O -0.522 6.522 12 C -0.079 4.079 13 C -0.170 4.170 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.233 4.233 27 C -0.057 4.057 28 H 0.216 0.784 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.379 0.621 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.120 24.430 3.657 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.189 4.189 3 C -0.045 4.045 4 C -0.183 4.183 5 C 0.038 3.962 6 H 0.126 0.874 7 O -0.364 6.364 8 C -0.037 4.037 9 N -0.391 5.391 10 C 0.295 3.705 11 O -0.396 6.396 12 C -0.119 4.119 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.252 4.252 27 C -0.075 4.075 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.227 0.773 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.140 23.653 3.336 27.759 hybrid contribution -0.379 -0.353 -0.600 0.793 sum -14.519 23.300 2.735 27.589 Atomic orbital electron populations 1.24953 0.96051 1.00507 1.01275 1.23181 0.94643 1.00688 1.00375 1.18655 0.84468 0.97371 1.04011 1.22190 0.95255 0.96699 1.04199 1.22192 0.92525 0.94084 0.87431 0.87381 1.86575 1.77062 1.56931 1.15817 1.21976 0.81678 0.96950 1.03128 1.45960 1.06311 1.10759 1.76037 1.21096 0.90728 0.82986 0.75734 1.90752 1.70279 1.31561 1.46997 1.20396 0.90564 0.97188 1.03744 1.18646 1.09972 0.94792 0.93730 1.20401 0.97437 0.92898 0.97086 1.20155 1.09376 0.96569 0.94977 1.19382 0.91015 0.86037 0.93302 1.83973 1.71269 1.23090 1.29904 1.21328 1.48604 0.95816 0.80963 0.89098 1.25280 0.96627 0.94756 0.99877 1.70038 1.43094 1.05542 1.31198 0.85717 0.78881 0.78365 0.80495 1.19910 1.20282 1.19219 1.21106 1.09785 0.94918 0.99371 1.20505 0.96760 0.94964 0.95279 0.76692 0.88805 0.89475 0.90082 0.90691 0.77331 0.91313 0.90710 0.76323 0.89023 0.88938 0.87393 0.86554 0.92085 0.85601 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.19 -1.41 13.34 -37.12 -0.50 -1.90 16 3 C -0.01 -0.05 5.60 -29.52 -0.17 -0.21 16 4 C -0.15 -0.72 4.85 -26.73 -0.13 -0.85 16 5 C 0.10 0.50 3.05 -26.73 -0.08 0.42 16 6 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 7 O -0.56 -3.07 12.62 -35.23 -0.44 -3.51 16 8 C 0.09 0.70 5.34 -4.05 -0.02 0.68 16 9 N -0.74 -6.81 5.45 -60.30 -0.33 -7.14 16 10 C 0.51 6.93 7.82 -10.99 -0.09 6.84 16 11 O -0.52 -9.84 16.03 5.55 0.09 -9.75 16 12 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 13 C -0.17 -3.01 4.38 -104.57 -0.46 -3.47 16 14 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 15 C -0.19 -4.26 9.99 -39.39 -0.39 -4.65 16 16 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 17 O -0.18 -5.28 9.76 0.07 0.00 -5.28 16 18 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 19 H 0.09 2.43 5.20 -52.48 -0.27 2.15 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.83 13.67 55.48 0.76 -25.08 16 22 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 H 0.22 0.81 7.80 -54.10 -0.42 0.39 16 29 H 0.09 0.48 7.82 -51.92 -0.41 0.07 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 1.23 9.05 45.56 0.41 1.64 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 2.74 8.35 -40.82 -0.34 2.40 16 37 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -36.42 379.40 -6.96 -43.37 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.11 Total: 5.81 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.62 Total: -20.11 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.43 Total: -32.22 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.35 Total: -18.54 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.42 -6.96 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799076869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.764 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds