Wall clock time and date at job start Tue Mar 31 2020 11:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47420 * 3.57579 * 3 2 1 5 5 C 1.53001 * 109.47255 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47056 * 305.00078 * 5 4 3 7 7 O 1.42901 * 109.46902 * 64.99711 * 5 4 3 8 8 C 1.52995 * 109.47391 * 184.99812 * 5 4 3 9 9 N 1.46498 * 109.47240 * 179.97438 * 8 5 4 10 10 C 1.34780 * 119.99938 * 180.02562 * 9 8 5 11 11 O 1.21284 * 119.99717 * 359.97438 * 10 9 8 12 12 C 1.50695 * 119.99941 * 180.02562 * 10 9 8 13 13 C 1.50704 * 109.47309 * 179.97438 * 12 10 9 14 14 C 1.38304 * 119.92918 * 269.73061 * 13 12 10 15 15 C 1.38103 * 120.06357 * 179.72277 * 14 13 12 16 16 C 1.38877 * 119.93139 * 0.56804 * 15 14 13 17 17 O 1.35750 * 120.07145 * 179.68224 * 16 15 14 18 18 C 1.34822 * 117.00274 * 174.48671 * 17 16 15 19 19 H 1.08010 * 120.00276 * 5.05664 * 18 17 16 20 20 C 1.38657 * 120.00131 * 185.05855 * 18 17 16 21 21 N 1.31549 * 119.99980 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00229 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47187 * 89.99713 * 22 20 18 24 24 H 1.48490 * 109.47220 * 209.99909 * 22 20 18 25 25 H 1.48504 * 109.46630 * 330.00111 * 22 20 18 26 26 C 1.38885 * 119.86315 * 359.70588 * 16 15 14 27 27 C 1.38099 * 119.92736 * 359.97438 * 26 16 15 28 28 H 4.44652 * 5.63341 * 180.02562 * 4 1 2 29 29 H 1.09007 * 109.46785 * 243.57179 * 3 2 1 30 30 H 1.09002 * 109.47116 * 123.58024 * 3 2 1 31 31 H 1.08997 * 109.47474 * 60.00018 * 4 3 2 32 32 H 1.09005 * 109.47096 * 299.99851 * 4 3 2 33 33 H 0.96703 * 114.00224 * 60.00678 * 7 5 4 34 34 H 1.08996 * 109.47238 * 300.00155 * 8 5 4 35 35 H 1.09004 * 109.46882 * 60.00082 * 8 5 4 36 36 H 0.96996 * 120.00023 * 0.02562 * 9 8 5 37 37 H 1.08996 * 109.47227 * 299.99976 * 12 10 9 38 38 H 1.09004 * 109.47018 * 59.99980 * 12 10 9 39 39 H 1.07990 * 119.96642 * 359.97117 * 14 13 12 40 40 H 1.07999 * 120.03179 * 180.26577 * 15 14 13 41 41 H 0.97005 * 120.00580 * 180.02562 * 21 20 18 42 42 H 1.07994 * 120.03350 * 179.97438 * 26 16 15 43 43 H 1.08001 * 119.96146 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4387 -0.0900 5 6 4.6867 -1.4381 -0.0893 6 1 5.0501 -0.7970 -0.8924 7 8 5.1622 -0.9458 1.1651 8 6 5.1975 -2.8641 -0.3044 9 7 6.6625 -2.8633 -0.3043 10 6 7.3370 -4.0171 -0.4789 11 8 6.7311 -5.0560 -0.6355 12 6 8.8439 -4.0163 -0.4783 13 6 9.3471 -5.4210 -0.6902 14 6 9.5824 -6.2413 0.3982 15 6 10.0380 -7.5309 0.2069 16 6 10.2712 -7.9998 -1.0794 17 8 10.7252 -9.2648 -1.2703 18 6 10.8215 -9.6948 -2.5445 19 1 10.6216 -9.0157 -3.3603 20 6 11.1772 -11.0088 -2.8078 21 7 11.4211 -11.8359 -1.8143 22 14 11.3114 -11.6044 -4.5732 23 1 12.6971 -11.3923 -5.0632 24 1 10.9808 -13.0508 -4.6342 25 1 10.3630 -10.8434 -5.4257 26 6 10.0393 -7.1717 -2.1700 27 6 9.5774 -5.8853 -1.9724 28 1 -1.0498 -0.0004 -0.0002 29 1 3.0091 0.4582 0.9203 30 1 3.0091 0.5692 -0.8562 31 1 2.7936 -1.8963 -1.0102 32 1 2.7937 -2.0073 0.7663 33 1 4.8769 -1.4690 1.9267 34 1 4.8341 -3.5052 0.4988 35 1 4.8347 -3.2395 -1.2613 36 1 7.1470 -2.0325 -0.1787 37 1 9.2073 -3.3749 -1.2811 38 1 9.2067 -3.6414 0.4788 39 1 9.4058 -5.8743 1.3983 40 1 10.2175 -8.1724 1.0570 41 1 11.6703 -12.7551 -1.9984 42 1 10.2200 -7.5334 -3.1713 43 1 9.3973 -5.2408 -2.8201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799076869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:14 Heat of formation + Delta-G solvation = -77.259596 kcal Electronic energy + Delta-G solvation = -24431.982042 eV Core-core repulsion = 20635.879000 eV Total energy + Delta-G solvation = -3796.103042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.09535 -40.43517 -39.07166 -38.13225 -35.63896 -35.14545 -34.39373 -32.95051 -32.30650 -31.76877 -29.69595 -28.00409 -26.94679 -24.85046 -23.62784 -22.60609 -22.47099 -21.12201 -19.84045 -19.01734 -18.83623 -18.10057 -17.54318 -17.27075 -16.61936 -16.52910 -16.25300 -15.90130 -15.70976 -15.55530 -15.39997 -15.08477 -14.89850 -14.50074 -14.39346 -14.13529 -13.86163 -13.70533 -13.61645 -13.39914 -12.96244 -12.71545 -12.46951 -12.40135 -12.28264 -12.22771 -12.12466 -11.86952 -11.39899 -11.17321 -11.05868 -10.97565 -10.81957 -10.66151 -10.04171 -9.75537 -8.89134 -8.47170 -6.15411 0.62239 0.68339 1.33713 1.43463 1.51844 1.76464 1.85437 1.92200 2.17638 2.28546 2.85672 3.17838 3.43069 3.53232 3.53498 3.74980 3.89327 4.00737 4.06806 4.16670 4.19542 4.27085 4.34055 4.50807 4.52706 4.60992 4.71500 4.74116 4.78159 4.82097 4.88514 5.10292 5.15142 5.18677 5.21239 5.24665 5.31670 5.51281 5.57481 5.72316 5.79177 6.03077 6.24269 6.66407 6.71367 6.80345 6.97299 7.40263 7.78840 8.76292 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.001882 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.812570 B =14871.148766 C =15449.587064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.007 4.007 4 C -0.139 4.139 5 C 0.115 3.885 6 H 0.121 0.879 7 O -0.564 6.564 8 C 0.085 3.915 9 N -0.713 5.713 10 C 0.509 3.491 11 O -0.584 6.584 12 C -0.078 4.078 13 C -0.146 4.146 14 C -0.058 4.058 15 C -0.207 4.207 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.245 4.245 27 C -0.061 4.061 28 H 0.237 0.763 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.389 0.611 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.419 0.581 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 28.390 3.160 32.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.043 4.043 4 C -0.178 4.178 5 C 0.056 3.944 6 H 0.138 0.862 7 O -0.371 6.371 8 C -0.040 4.040 9 N -0.367 5.367 10 C 0.296 3.704 11 O -0.463 6.463 12 C -0.117 4.117 13 C -0.147 4.147 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.264 4.264 27 C -0.079 4.079 28 H 0.254 0.746 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.257 0.743 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.034 27.734 2.871 31.677 hybrid contribution -0.274 -1.203 -0.267 1.263 sum -15.308 26.531 2.604 30.741 Atomic orbital electron populations 1.25701 0.97093 1.00072 1.00903 1.23823 0.95736 1.01178 1.00836 1.18713 0.83469 0.97538 1.04628 1.22114 0.95086 0.96565 1.03994 1.22024 0.92333 0.92229 0.87850 0.86171 1.86562 1.77147 1.57226 1.16192 1.22079 0.80804 0.98771 1.02298 1.45751 1.06898 1.10254 1.73806 1.21183 0.91075 0.83062 0.75036 1.90759 1.71421 1.33842 1.50311 1.20526 0.89826 0.94007 1.07338 1.19294 1.05771 0.97107 0.92510 1.20887 0.95733 0.91382 0.99617 1.20449 1.09912 0.98357 0.93900 1.19944 0.93082 0.85558 0.95340 1.83932 1.74394 1.25449 1.30346 1.21826 1.49162 0.96707 0.81423 0.88280 1.26614 0.95885 0.94461 1.05162 1.70187 1.45604 1.06107 1.34057 0.84574 0.79602 0.77864 0.74057 1.18470 1.19508 1.17906 1.21236 1.10401 0.96408 0.98349 1.20941 0.95573 0.93829 0.97537 0.74604 0.88390 0.88508 0.90450 0.90852 0.76155 0.92232 0.91768 0.74342 0.85358 0.85173 0.83522 0.87010 0.91844 0.86512 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.76 19.25 74.32 1.43 -1.33 16 2 C -0.22 -2.93 13.34 31.12 0.42 -2.51 16 3 C -0.01 -0.06 5.60 28.79 0.16 0.10 16 4 C -0.14 -1.10 4.85 30.59 0.15 -0.95 16 5 C 0.12 0.84 3.05 30.59 0.09 0.94 16 6 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 7 O -0.56 -4.24 12.62 -148.98 -1.88 -6.12 16 8 C 0.08 1.15 5.34 86.38 0.46 1.61 16 9 N -0.71 -10.37 5.45 -463.07 -2.52 -12.89 16 10 C 0.51 11.97 7.82 87.65 0.69 12.66 16 11 O -0.58 -20.94 16.03 -3.04 -0.05 -20.98 16 12 C -0.08 -1.53 5.83 29.10 0.17 -1.36 16 13 C -0.15 -4.69 4.38 -19.83 -0.09 -4.78 16 14 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 15 C -0.21 -9.45 9.99 22.39 0.22 -9.22 16 16 C 0.11 5.89 6.65 22.58 0.15 6.04 16 17 O -0.23 -14.83 9.76 -22.66 -0.22 -15.06 16 18 C -0.42 -25.27 9.49 67.92 0.64 -24.63 16 19 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 20 C -0.02 -1.41 5.49 84.84 0.47 -0.95 16 21 N -0.92 -58.25 13.67 21.61 0.30 -57.96 16 22 Si 1.02 44.34 29.55 68.60 2.03 46.36 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 26 C -0.24 -11.40 9.17 22.39 0.21 -11.20 16 27 C -0.06 -2.23 9.69 22.25 0.22 -2.01 16 28 H 0.24 1.42 7.80 -4.43 -0.03 1.38 16 29 H 0.10 0.77 7.82 -2.38 -0.02 0.75 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.39 1.31 9.05 -74.06 -0.67 0.64 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.42 3.53 8.35 -92.71 -0.77 2.75 16 37 H 0.13 1.73 8.08 -2.39 -0.02 1.71 16 38 H 0.13 1.72 8.08 -2.39 -0.02 1.70 16 39 H 0.15 4.06 8.06 -2.92 -0.02 4.03 16 40 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 41 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 42 H 0.12 5.51 5.64 -2.91 -0.02 5.50 16 43 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -86.58 379.40 2.85 -83.74 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -0.40 Total: 22.36 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 5.60 Total: -39.45 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -2.23 Total: -70.85 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -2.15 Total: -42.16 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -86.58 2.85 -83.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799076869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.476 kcal (2) G-P(sol) polarization free energy of solvation -86.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds