Wall clock time and date at job start Tue Mar 31 2020 11:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46926 * 225.18826 * 3 2 1 5 5 C 1.52993 * 109.47196 * 180.02562 * 4 3 2 6 6 H 1.09009 * 109.47003 * 304.99980 * 5 4 3 7 7 O 1.42896 * 109.47256 * 64.99393 * 5 4 3 8 8 C 1.52996 * 109.47422 * 184.99736 * 5 4 3 9 9 N 1.46495 * 109.47276 * 179.97438 * 8 5 4 10 10 C 1.34783 * 119.99931 * 180.02562 * 9 8 5 11 11 O 1.21281 * 119.99796 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99878 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.46970 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02075 * 13 12 10 15 15 C 1.38280 * 120.13484 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.07150 * 359.67534 * 15 14 13 17 17 C 1.38861 * 119.92830 * 0.59673 * 16 15 14 18 18 O 1.35751 * 120.06597 * 179.69892 * 17 16 15 19 19 C 1.34829 * 117.00376 * 354.17384 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38657 * 120.00083 * 185.03464 * 19 18 17 22 22 N 1.31555 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99748 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47410 * 90.00109 * 23 21 19 25 25 H 1.48504 * 109.46801 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47495 * 329.99577 * 23 21 19 27 27 C 1.38073 * 119.96952 * 89.99515 * 13 12 10 28 28 H 4.44663 * 5.63287 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.46883 * 105.18908 * 3 2 1 30 30 H 1.09001 * 109.47162 * 345.18830 * 3 2 1 31 31 H 1.08997 * 109.47151 * 59.99573 * 4 3 2 32 32 H 1.09001 * 109.46464 * 299.99898 * 4 3 2 33 33 H 0.96703 * 113.99603 * 60.00444 * 7 5 4 34 34 H 1.09006 * 109.46601 * 60.00013 * 8 5 4 35 35 H 1.08997 * 109.47252 * 300.00533 * 8 5 4 36 36 H 0.97001 * 120.00257 * 0.02562 * 9 8 5 37 37 H 1.08996 * 109.47386 * 59.99804 * 12 10 9 38 38 H 1.08997 * 109.47038 * 299.99640 * 12 10 9 39 39 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 40 40 H 1.08007 * 119.96121 * 179.97438 * 15 14 13 41 41 H 1.08001 * 120.03709 * 180.32387 * 16 15 14 42 42 H 0.96998 * 119.99749 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.03594 * 0.04940 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 1.0176 1.0234 5 6 4.6855 1.0188 1.0230 6 1 5.0497 0.0063 1.1979 7 8 5.1612 1.4841 -0.2416 8 6 5.1952 1.9426 2.1310 9 7 6.6601 1.9432 2.1309 10 6 7.3337 2.6905 3.0279 11 8 6.7270 3.3620 3.8352 12 6 8.8407 2.6916 3.0275 13 6 9.3426 3.6005 4.1197 14 6 9.5714 4.9387 3.8542 15 6 10.0325 5.7758 4.8536 16 6 10.2596 5.2792 6.1223 17 6 10.0362 3.9352 6.3905 18 8 10.2644 3.4429 7.6349 19 6 10.8207 4.2812 8.5324 20 1 10.9890 5.3160 8.2728 21 6 11.1769 3.8149 9.7887 22 7 11.7202 4.6329 10.6642 23 14 10.8864 2.0251 10.2375 24 1 12.0823 1.2232 9.8741 25 1 10.6415 1.9145 11.6980 26 1 9.7046 1.5146 9.4973 27 6 9.5731 3.0969 5.3845 28 1 -1.0502 -0.0001 -0.0004 29 1 3.0093 0.2701 -0.9918 30 1 3.0099 -0.9927 0.2627 31 1 2.7923 0.7482 2.0151 32 1 2.7918 2.0109 0.7606 33 1 4.8751 2.3808 -0.4636 34 1 4.8323 1.5875 3.0956 35 1 4.8310 2.9549 1.9561 36 1 7.1454 1.4059 1.4854 37 1 9.2035 3.0471 2.0631 38 1 9.2048 1.6792 3.2019 39 1 9.3904 5.3303 2.8641 40 1 10.2106 6.8200 4.6431 41 1 10.6147 5.9346 6.9038 42 1 11.9690 4.3067 11.5432 43 1 9.3946 2.0520 5.5911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799080750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:23 Heat of formation + Delta-G solvation = -47.977271 kcal Electronic energy + Delta-G solvation = -24612.384448 eV Core-core repulsion = 20817.551183 eV Total energy + Delta-G solvation = -3794.833265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.01063 -39.06535 -38.37521 -36.59906 -35.13652 -34.39048 -32.43016 -32.20458 -31.80584 -29.50655 -28.96844 -26.96453 -25.15544 -24.27890 -22.14947 -21.77964 -21.07648 -20.07324 -18.54211 -17.73145 -17.49213 -16.98587 -16.81046 -16.67776 -15.56828 -15.50210 -15.12512 -14.95245 -14.73859 -14.35939 -13.92026 -13.80801 -13.61713 -13.47318 -13.29911 -13.20607 -12.87035 -12.52573 -12.32991 -12.13613 -11.98412 -11.62113 -11.43782 -11.27145 -10.94348 -10.80901 -10.77118 -10.68176 -10.53384 -10.41960 -10.12405 -9.77786 -9.34626 -9.20728 -8.82876 -8.10092 -7.31053 -6.36757 -4.03280 2.05030 2.33215 2.37523 2.43215 2.72431 3.07721 3.25242 3.28102 3.44049 3.84422 3.92490 4.23077 4.27908 4.41883 4.51358 4.58075 4.76928 4.83108 4.88786 5.00685 5.10838 5.12355 5.20626 5.31487 5.37247 5.47863 5.57977 5.60231 5.60877 5.66091 5.73018 5.88557 6.16504 6.27362 6.29962 6.57519 6.83611 7.08363 7.14614 7.20504 7.25849 7.36093 7.41729 7.65762 7.85708 8.09218 8.27027 8.98878 9.62245 10.71131 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.002140 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.506220 B =13081.976437 C =14044.602699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C -0.009 4.009 4 C -0.145 4.145 5 C 0.097 3.903 6 H 0.109 0.891 7 O -0.558 6.558 8 C 0.087 3.913 9 N -0.734 5.734 10 C 0.512 3.488 11 O -0.521 6.521 12 C -0.093 4.093 13 C -0.036 4.036 14 C -0.188 4.188 15 C -0.076 4.076 16 C -0.217 4.217 17 C 0.160 3.840 18 O -0.220 6.220 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.174 4.174 28 H 0.216 0.784 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.378 0.622 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.278 0.722 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -8.630 -23.541 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.189 4.189 3 C -0.045 4.045 4 C -0.183 4.183 5 C 0.037 3.963 6 H 0.127 0.873 7 O -0.364 6.364 8 C -0.037 4.037 9 N -0.389 5.389 10 C 0.299 3.701 11 O -0.395 6.395 12 C -0.133 4.133 13 C -0.036 4.036 14 C -0.207 4.207 15 C -0.095 4.095 16 C -0.236 4.236 17 C 0.108 3.892 18 O -0.125 6.125 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.226 0.774 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.928 -8.911 -22.602 28.515 hybrid contribution -0.398 -0.238 0.175 0.496 sum -15.326 -9.149 -22.427 28.663 Atomic orbital electron populations 1.24961 0.96053 1.00828 1.00933 1.23180 0.94641 1.00571 1.00509 1.18658 0.84476 1.00359 1.01016 1.22187 0.95211 1.00379 1.00555 1.22197 0.92574 0.98565 0.82920 0.87309 1.86580 1.77001 1.36429 1.36354 1.21992 0.81448 1.00531 0.99737 1.45901 1.06430 1.49572 1.36963 1.20792 0.90266 0.78890 0.80166 1.90767 1.70161 1.40848 1.37690 1.20577 0.91297 1.01565 0.99860 1.18667 0.98616 0.93603 0.92736 1.20419 1.08123 0.93185 0.98943 1.20738 0.97500 0.98493 0.92738 1.21295 1.08598 0.95811 0.97945 1.19014 0.93318 0.91818 0.85038 1.83566 1.71269 1.40841 1.16834 1.20763 1.39028 0.93728 0.92834 0.87670 1.24452 0.95384 0.99742 0.94458 1.69648 1.40152 1.35696 1.06486 0.86189 0.79838 0.83478 0.77446 1.19926 1.20830 1.18390 1.19938 1.08792 0.99152 0.91491 0.76681 0.88810 0.89451 0.90043 0.90700 0.77368 0.90573 0.91252 0.76214 0.88240 0.88245 0.87738 0.87179 0.84997 0.91139 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.45 19.25 29.55 0.57 -0.89 16 2 C -0.19 -1.41 13.34 -37.12 -0.50 -1.91 16 3 C -0.01 -0.05 5.60 -29.51 -0.17 -0.21 16 4 C -0.15 -0.71 4.85 -26.73 -0.13 -0.84 16 5 C 0.10 0.50 3.05 -26.74 -0.08 0.41 16 6 H 0.11 0.52 8.14 -51.92 -0.42 0.09 16 7 O -0.56 -2.97 12.62 -35.23 -0.44 -3.41 16 8 C 0.09 0.69 5.34 -4.05 -0.02 0.67 16 9 N -0.73 -6.69 5.45 -60.30 -0.33 -7.02 16 10 C 0.51 6.91 7.82 -10.98 -0.09 6.82 16 11 O -0.52 -9.70 16.03 5.56 0.09 -9.61 16 12 C -0.09 -1.15 5.83 -29.04 -0.17 -1.32 16 13 C -0.04 -0.63 4.37 -104.65 -0.46 -1.08 16 14 C -0.19 -3.30 9.70 -39.53 -0.38 -3.69 16 15 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 16 C -0.22 -4.91 9.17 -39.39 -0.36 -5.27 16 17 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 18 O -0.22 -6.01 8.59 0.05 0.00 -6.01 16 19 C -0.39 -11.23 9.95 30.89 0.31 -10.92 16 20 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 21 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 22 N -0.88 -25.91 13.96 55.48 0.77 -25.14 16 23 Si 0.90 22.15 28.62 -169.99 -4.86 17.29 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.26 -6.43 7.11 56.52 0.40 -6.02 16 27 C -0.17 -3.63 9.64 -39.40 -0.38 -4.01 16 28 H 0.22 0.81 7.80 -54.08 -0.42 0.39 16 29 H 0.09 0.47 7.82 -51.93 -0.41 0.06 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.38 1.12 9.05 45.56 0.41 1.54 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.40 2.67 8.35 -40.82 -0.34 2.33 16 37 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.13 3.10 5.64 -52.49 -0.30 2.81 16 42 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -35.57 378.28 -6.80 -42.37 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.12 Total: 4.62 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.61 Total: -18.79 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.45 Total: -32.15 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.36 Total: -19.03 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.57 -6.80 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799080750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.611 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds