Wall clock time and date at job start Tue Mar 31 2020 11:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46926 * 225.18826 * 3 2 1 5 5 C 1.52993 * 109.47196 * 180.02562 * 4 3 2 6 6 H 1.09009 * 109.47003 * 304.99980 * 5 4 3 7 7 O 1.42896 * 109.47256 * 64.99393 * 5 4 3 8 8 C 1.52996 * 109.47422 * 184.99736 * 5 4 3 9 9 N 1.46495 * 109.47276 * 179.97438 * 8 5 4 10 10 C 1.34783 * 119.99931 * 180.02562 * 9 8 5 11 11 O 1.21281 * 119.99796 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99878 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.46970 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02075 * 13 12 10 15 15 C 1.38280 * 120.13484 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.07150 * 359.67534 * 15 14 13 17 17 C 1.38861 * 119.92830 * 0.59673 * 16 15 14 18 18 O 1.35751 * 120.06597 * 179.69892 * 17 16 15 19 19 C 1.34829 * 117.00376 * 354.17384 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38657 * 120.00083 * 185.03464 * 19 18 17 22 22 N 1.31555 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99748 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47410 * 90.00109 * 23 21 19 25 25 H 1.48504 * 109.46801 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47495 * 329.99577 * 23 21 19 27 27 C 1.38073 * 119.96952 * 89.99515 * 13 12 10 28 28 H 4.44663 * 5.63287 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.46883 * 105.18908 * 3 2 1 30 30 H 1.09001 * 109.47162 * 345.18830 * 3 2 1 31 31 H 1.08997 * 109.47151 * 59.99573 * 4 3 2 32 32 H 1.09001 * 109.46464 * 299.99898 * 4 3 2 33 33 H 0.96703 * 113.99603 * 60.00444 * 7 5 4 34 34 H 1.09006 * 109.46601 * 60.00013 * 8 5 4 35 35 H 1.08997 * 109.47252 * 300.00533 * 8 5 4 36 36 H 0.97001 * 120.00257 * 0.02562 * 9 8 5 37 37 H 1.08996 * 109.47386 * 59.99804 * 12 10 9 38 38 H 1.08997 * 109.47038 * 299.99640 * 12 10 9 39 39 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 40 40 H 1.08007 * 119.96121 * 179.97438 * 15 14 13 41 41 H 1.08001 * 120.03709 * 180.32387 * 16 15 14 42 42 H 0.96998 * 119.99749 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.03594 * 0.04940 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 1.0176 1.0234 5 6 4.6855 1.0188 1.0230 6 1 5.0497 0.0063 1.1979 7 8 5.1612 1.4841 -0.2416 8 6 5.1952 1.9426 2.1310 9 7 6.6601 1.9432 2.1309 10 6 7.3337 2.6905 3.0279 11 8 6.7270 3.3620 3.8352 12 6 8.8407 2.6916 3.0275 13 6 9.3426 3.6005 4.1197 14 6 9.5714 4.9387 3.8542 15 6 10.0325 5.7758 4.8536 16 6 10.2596 5.2792 6.1223 17 6 10.0362 3.9352 6.3905 18 8 10.2644 3.4429 7.6349 19 6 10.8207 4.2812 8.5324 20 1 10.9890 5.3160 8.2728 21 6 11.1769 3.8149 9.7887 22 7 11.7202 4.6329 10.6642 23 14 10.8864 2.0251 10.2375 24 1 12.0823 1.2232 9.8741 25 1 10.6415 1.9145 11.6980 26 1 9.7046 1.5146 9.4973 27 6 9.5731 3.0969 5.3845 28 1 -1.0502 -0.0001 -0.0004 29 1 3.0093 0.2701 -0.9918 30 1 3.0099 -0.9927 0.2627 31 1 2.7923 0.7482 2.0151 32 1 2.7918 2.0109 0.7606 33 1 4.8751 2.3808 -0.4636 34 1 4.8323 1.5875 3.0956 35 1 4.8310 2.9549 1.9561 36 1 7.1454 1.4059 1.4854 37 1 9.2035 3.0471 2.0631 38 1 9.2048 1.6792 3.2019 39 1 9.3904 5.3303 2.8641 40 1 10.2106 6.8200 4.6431 41 1 10.6147 5.9346 6.9038 42 1 11.9690 4.3067 11.5432 43 1 9.3946 2.0520 5.5911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799080750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:22 Heat of formation + Delta-G solvation = -74.032473 kcal Electronic energy + Delta-G solvation = -24613.514287 eV Core-core repulsion = 20817.551183 eV Total energy + Delta-G solvation = -3795.963104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18945 -40.52050 -39.09534 -38.22892 -35.65082 -35.17033 -34.48265 -33.53986 -32.38667 -31.10267 -29.85173 -28.09890 -27.15601 -24.96303 -23.35051 -22.61788 -22.55776 -21.23536 -19.66889 -19.08011 -18.84590 -18.09193 -17.51287 -17.28524 -16.87260 -16.71638 -16.33570 -16.05371 -15.70419 -15.66712 -15.42212 -15.03898 -14.93423 -14.54061 -14.38325 -14.15849 -13.98258 -13.78072 -13.70913 -13.45184 -13.04026 -12.75363 -12.51878 -12.44206 -12.39940 -12.33634 -11.93179 -11.87697 -11.40407 -11.31375 -11.09063 -10.98305 -10.91274 -10.73652 -10.07071 -9.66158 -9.06200 -8.50423 -6.23174 0.49150 0.70410 1.29289 1.34038 1.50759 1.71345 1.85056 1.92063 2.24185 2.27626 2.78748 3.05361 3.14542 3.42339 3.52934 3.73810 3.78958 3.99732 4.08142 4.14286 4.20476 4.30225 4.33922 4.45233 4.50960 4.56736 4.66939 4.71112 4.71920 4.76990 4.87626 4.98480 5.18427 5.20910 5.23890 5.25660 5.39340 5.47990 5.65441 5.73012 5.76706 5.91686 6.25434 6.61799 6.71190 6.80686 6.83815 7.35077 7.58827 8.61390 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.002140 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.506220 B =13081.976437 C =14044.602699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.007 4.007 4 C -0.139 4.139 5 C 0.115 3.885 6 H 0.119 0.881 7 O -0.563 6.563 8 C 0.085 3.915 9 N -0.712 5.712 10 C 0.512 3.488 11 O -0.582 6.582 12 C -0.090 4.090 13 C -0.029 4.029 14 C -0.171 4.171 15 C -0.079 4.079 16 C -0.241 4.241 17 C 0.117 3.883 18 O -0.247 6.247 19 C -0.400 4.400 20 H 0.079 0.921 21 C 0.009 3.991 22 N -0.923 5.923 23 Si 0.972 3.028 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.267 1.267 27 C -0.181 4.181 28 H 0.238 0.762 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.389 0.611 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.420 0.580 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.285 0.715 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 -10.414 -27.200 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.177 4.177 5 C 0.056 3.944 6 H 0.137 0.863 7 O -0.370 6.370 8 C -0.039 4.039 9 N -0.366 5.366 10 C 0.300 3.700 11 O -0.461 6.461 12 C -0.129 4.129 13 C -0.029 4.029 14 C -0.189 4.189 15 C -0.097 4.097 16 C -0.260 4.260 17 C 0.069 3.931 18 O -0.155 6.155 19 C -0.476 4.476 20 H 0.097 0.903 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.191 1.191 26 H -0.192 1.192 27 C -0.201 4.201 28 H 0.254 0.746 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.239 0.761 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.257 0.743 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.781 -10.713 -26.353 32.531 hybrid contribution -0.259 0.414 0.947 1.065 sum -16.040 -10.299 -25.406 31.762 Atomic orbital electron populations 1.25710 0.97093 1.00422 1.00517 1.23821 0.95731 1.01053 1.00993 1.18715 0.83488 1.00858 1.01302 1.22111 0.95036 1.00367 1.00222 1.22011 0.92377 0.98138 0.81923 0.86344 1.86566 1.77074 1.37444 1.35960 1.22094 0.80608 1.00966 1.00268 1.45715 1.06999 1.48047 1.35792 1.20941 0.90664 0.78529 0.79897 1.90765 1.71291 1.43778 1.40296 1.20698 0.90501 1.02063 0.99687 1.19256 0.96204 0.94697 0.92783 1.21023 1.04762 0.92920 1.00210 1.21119 0.96651 1.00436 0.91466 1.21321 1.10131 0.95330 0.99254 1.19613 0.95313 0.93247 0.84967 1.83504 1.73272 1.40695 1.18056 1.20709 1.39767 0.93223 0.93935 0.90336 1.25290 0.95232 1.04213 0.94186 1.69731 1.41887 1.37643 1.07166 0.85207 0.79625 0.78069 0.77722 1.18632 1.19063 1.19163 1.20283 1.08304 0.99406 0.92068 0.74579 0.88303 0.88639 0.90556 0.90660 0.76102 0.91934 0.91827 0.74268 0.83953 0.85537 0.83364 0.84194 0.87556 0.90569 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.77 19.25 74.32 1.43 -1.34 16 2 C -0.22 -2.96 13.34 31.13 0.42 -2.54 16 3 C -0.01 -0.06 5.60 28.79 0.16 0.10 16 4 C -0.14 -1.10 4.85 30.59 0.15 -0.96 16 5 C 0.12 0.85 3.05 30.59 0.09 0.95 16 6 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 7 O -0.56 -4.05 12.62 -148.98 -1.88 -5.93 16 8 C 0.09 1.16 5.34 86.38 0.46 1.62 16 9 N -0.71 -10.44 5.45 -463.07 -2.52 -12.96 16 10 C 0.51 12.14 7.82 87.66 0.69 12.82 16 11 O -0.58 -20.80 16.03 -3.03 -0.05 -20.85 16 12 C -0.09 -1.81 5.83 29.10 0.17 -1.64 16 13 C -0.03 -0.93 4.37 -19.88 -0.09 -1.01 16 14 C -0.17 -5.41 9.70 22.30 0.22 -5.19 16 15 C -0.08 -2.91 10.04 22.25 0.22 -2.69 16 16 C -0.24 -11.37 9.17 22.39 0.21 -11.16 16 17 C 0.12 5.88 6.65 22.58 0.15 6.03 16 18 O -0.25 -14.21 8.59 -22.74 -0.20 -14.41 16 19 C -0.40 -24.64 9.95 67.92 0.68 -23.96 16 20 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 21 C 0.01 0.53 5.49 84.83 0.47 1.00 16 22 N -0.92 -56.62 13.96 21.61 0.30 -56.32 16 23 Si 0.97 46.95 28.62 68.60 1.96 48.91 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 27 C -0.18 -7.45 9.64 22.39 0.22 -7.23 16 28 H 0.24 1.43 7.80 -4.41 -0.03 1.40 16 29 H 0.10 0.77 7.82 -2.39 -0.02 0.75 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.39 1.04 9.05 -74.06 -0.67 0.38 16 34 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.42 3.58 8.35 -92.71 -0.77 2.81 16 37 H 0.14 1.71 8.09 -2.39 -0.02 1.69 16 38 H 0.13 1.94 8.08 -2.39 -0.02 1.92 16 39 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.11 5.46 5.64 -2.91 -0.02 5.45 16 42 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 43 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -82.90 378.28 2.84 -80.05 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -0.40 Total: 16.71 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 5.63 Total: -35.21 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -2.22 Total: -69.28 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -2.12 Total: -41.18 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.96 Total: 48.91 kcal Total: -82.90 2.84 -80.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799080750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.019 kcal (2) G-P(sol) polarization free energy of solvation -82.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds