Wall clock time and date at job start Tue Mar 31 2020 11:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.88800 * 2 1 4 4 O 1.45200 * 109.47092 * 56.18789 * 3 2 1 5 5 C 1.34229 * 117.00090 * 180.02562 * 4 3 2 6 6 O 1.20832 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99903 * 180.02562 * 5 4 3 8 8 C 1.50701 * 109.47083 * 179.97438 * 7 5 4 9 9 C 1.37635 * 120.12788 * 264.72702 * 8 7 5 10 10 C 1.38615 * 120.24871 * 179.69879 * 9 8 7 11 11 C 1.38660 * 120.49765 * 0.60031 * 10 9 8 12 12 C 1.37594 * 120.24928 * 359.67773 * 11 10 9 13 13 C 1.40696 * 120.12537 * 85.00038 * 8 7 5 14 14 C 1.41396 * 120.24844 * 0.02562 * 13 8 7 15 15 H 1.08000 * 119.99846 * 334.06118 * 14 13 8 16 16 C 1.39941 * 120.00166 * 154.04860 * 14 13 8 17 17 N 1.30825 * 120.00073 * 343.66808 * 16 14 13 18 18 Si 1.86799 * 120.00177 * 163.66517 * 16 14 13 19 19 H 1.48500 * 109.47074 * 89.99929 * 18 16 14 20 20 H 1.48496 * 109.47218 * 210.00257 * 18 16 14 21 21 H 1.48503 * 109.46914 * 330.00141 * 18 16 14 22 22 C 1.54483 * 110.96852 * 236.19044 * 2 1 3 23 23 N 1.46771 * 105.47212 * 216.46094 * 22 2 1 24 24 C 1.34424 * 111.29712 * 17.28586 * 23 22 2 25 25 O 1.21282 * 124.93857 * 179.29634 * 24 23 22 26 26 C 1.51278 * 110.11579 * 359.16681 * 24 23 22 27 27 H 1.09002 * 109.46876 * 183.81380 * 1 2 3 28 28 H 1.09001 * 109.47292 * 303.80972 * 1 2 3 29 29 H 1.09000 * 109.46848 * 63.81038 * 1 2 3 30 30 H 1.08993 * 109.47295 * 176.18919 * 3 2 1 31 31 H 1.09004 * 109.46527 * 296.19263 * 3 2 1 32 32 H 1.09004 * 109.47211 * 299.99334 * 7 5 4 33 33 H 1.09000 * 109.47280 * 60.00112 * 7 5 4 34 34 H 1.08002 * 119.87752 * 359.97438 * 9 8 7 35 35 H 1.08000 * 119.75391 * 180.29871 * 10 9 8 36 36 H 1.08008 * 119.87354 * 179.70312 * 11 10 9 37 37 H 1.08010 * 120.12648 * 180.02562 * 12 11 10 38 38 H 0.97002 * 119.99988 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.24789 * 97.46440 * 22 2 1 40 40 H 1.08993 * 110.24496 * 335.46035 * 22 2 1 41 41 H 0.97001 * 124.34846 * 197.01234 * 23 22 2 42 42 H 1.08999 * 110.64322 * 225.35966 * 26 24 23 43 43 H 1.09005 * 110.38806 * 102.80905 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 8 1.5363 2.1533 1.1374 5 6 1.9189 3.4316 1.2833 6 8 2.6796 3.9292 0.4871 7 6 1.4007 4.2458 2.4406 8 6 1.9782 5.6362 2.3751 9 6 3.1086 5.9495 3.0950 10 6 3.6455 7.2259 3.0317 11 6 3.0448 8.2041 2.2539 12 6 1.9108 7.9150 1.5303 13 6 1.3604 6.6207 1.5821 14 6 0.1951 6.3123 0.8431 15 1 0.0047 5.2949 0.5348 16 6 -0.7117 7.3252 0.5115 17 7 -0.6659 8.4743 1.1353 18 14 -1.9876 7.0368 -0.8220 19 1 -3.2203 6.4742 -0.2143 20 1 -2.3075 8.3249 -1.4880 21 1 -1.4493 6.0818 -1.8239 22 6 2.0828 -0.8027 -1.1986 23 7 3.2852 -1.4780 -0.6964 24 6 3.3058 -1.5030 0.6475 25 8 4.1788 -2.0104 1.3195 26 6 2.0835 -0.8035 1.1997 27 1 -0.3633 -1.0254 0.0684 28 1 -0.3634 0.5718 0.8539 29 1 -0.3633 0.4536 -0.9222 30 1 3.1630 1.4034 0.0683 31 1 1.7812 1.9306 -0.9222 32 1 0.3133 4.3008 2.3881 33 1 1.6959 3.7740 3.3778 34 1 3.5817 5.1967 3.7081 35 1 4.5355 7.4616 3.5961 36 1 3.4689 9.1967 2.2157 37 1 1.4448 8.6784 0.9248 38 1 -1.2942 9.1765 0.9051 39 1 2.3418 -0.1297 -2.0160 40 1 1.3491 -1.5367 -1.5315 41 1 3.9743 -1.8609 -1.2616 42 1 2.3593 -0.1327 2.0133 43 1 1.3496 -1.5338 1.5408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802199888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:26 Heat of formation + Delta-G solvation = -114.680455 kcal Electronic energy + Delta-G solvation = -26371.460128 eV Core-core repulsion = 22573.734396 eV Total energy + Delta-G solvation = -3797.725732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.91081 -39.78382 -37.76148 -37.15574 -35.72020 -33.68518 -33.23755 -31.84702 -29.52858 -28.76995 -27.77264 -26.69166 -25.88063 -24.99008 -21.38108 -20.98682 -20.73659 -19.85602 -19.34352 -17.53513 -17.23517 -17.07305 -16.57666 -16.20209 -15.45496 -15.26233 -15.16065 -14.54830 -14.28129 -14.13778 -13.79413 -13.69797 -13.52736 -13.23175 -12.87824 -12.63740 -12.42020 -12.10080 -11.94229 -11.82413 -11.62297 -11.28610 -11.22085 -11.12559 -11.06624 -10.99569 -10.77528 -10.45501 -10.34937 -10.01151 -9.79817 -9.54661 -9.45576 -9.40962 -9.21046 -7.39429 -7.36810 -6.79832 -4.41632 2.38099 2.63739 2.82872 2.91117 3.03145 3.07179 3.08712 3.22144 3.25487 3.88782 4.07088 4.10170 4.32428 4.57286 4.62198 4.86981 5.11124 5.13996 5.33588 5.37445 5.45261 5.50388 5.54558 5.68947 5.74636 5.79749 5.94180 6.03064 6.09412 6.24117 6.37191 6.46272 6.50831 6.70532 6.71856 6.90893 7.02319 7.23348 7.35609 7.58022 7.85489 7.98900 8.00740 8.07324 8.24293 8.41972 8.58452 8.84225 8.94204 10.14301 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.003700 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.366620 B = 7564.827861 C = 9022.281983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C 0.078 3.922 4 O -0.363 6.363 5 C 0.459 3.541 6 O -0.491 6.491 7 C -0.041 4.041 8 C -0.196 4.196 9 C -0.077 4.077 10 C -0.239 4.239 11 C -0.104 4.104 12 C -0.159 4.159 13 C 0.131 3.869 14 C -0.458 4.458 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.903 3.097 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.261 1.261 22 C 0.111 3.889 23 N -0.735 5.735 24 C 0.520 3.480 25 O -0.535 6.535 26 C -0.148 4.148 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.281 0.719 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.410 0.590 42 H 0.111 0.889 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 -14.819 -4.267 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.073 4.073 3 C 0.004 3.996 4 O -0.281 6.281 5 C 0.302 3.698 6 O -0.376 6.376 7 C -0.078 4.078 8 C -0.197 4.197 9 C -0.095 4.095 10 C -0.259 4.259 11 C -0.122 4.122 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.488 4.488 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.014 4.014 23 N -0.391 5.391 24 C 0.306 3.694 25 O -0.412 6.412 26 C -0.188 4.188 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.249 0.751 42 H 0.129 0.871 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.137 -14.663 -4.089 15.265 hybrid contribution -0.178 -0.082 -1.124 1.140 sum -1.315 -14.745 -5.213 15.694 Atomic orbital electron populations 1.21766 0.91319 1.02401 1.03875 1.21560 0.97973 0.93158 0.94573 1.22802 0.98148 0.89705 0.88958 1.86497 1.67893 1.26541 1.47193 1.24524 0.78701 0.79234 0.87390 1.90651 1.33012 1.70692 1.43276 1.19984 1.02787 0.92176 0.92838 1.19042 1.01292 0.93486 1.05923 1.20334 0.95117 0.95548 0.98479 1.20325 1.02822 0.94628 1.08100 1.20708 0.96544 0.96973 0.98015 1.21304 0.95855 0.98116 1.02520 1.17341 0.90897 0.90803 0.88108 1.19468 1.03854 0.95170 1.30295 0.90817 1.25881 0.98251 0.94428 0.95439 1.69814 1.32977 1.04621 1.34292 0.86391 0.80429 0.78998 0.81446 1.19364 1.20029 1.18541 1.22170 0.86995 0.95842 0.96385 1.46250 1.24897 1.60103 1.07826 1.21003 0.87235 0.78588 0.82561 1.90761 1.40557 1.47031 1.62846 1.22516 0.96532 1.00432 0.99305 0.92013 0.90296 0.91705 0.91521 0.90673 0.87400 0.89346 0.89531 0.89499 0.89446 0.86446 0.90825 0.89708 0.89889 0.75126 0.87088 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.37 37.16 0.31 -0.74 16 2 C -0.07 -0.64 0.81 -152.87 -0.12 -0.76 16 3 C 0.08 0.99 4.29 37.16 0.16 1.15 16 4 O -0.36 -5.56 9.06 -39.25 -0.36 -5.91 16 5 C 0.46 8.81 7.59 36.00 0.27 9.08 16 6 O -0.49 -11.17 15.78 -18.75 -0.30 -11.47 16 7 C -0.04 -0.78 5.29 -29.04 -0.15 -0.93 16 8 C -0.20 -4.59 4.43 -103.91 -0.46 -5.05 16 9 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 10 C -0.24 -5.46 10.05 -39.29 -0.39 -5.86 16 11 C -0.10 -2.48 10.02 -39.66 -0.40 -2.88 16 12 C -0.16 -4.14 8.68 -38.87 -0.34 -4.48 16 13 C 0.13 3.40 5.56 -106.82 -0.59 2.81 16 14 C -0.46 -11.67 8.14 -37.74 -0.31 -11.97 16 15 H 0.07 1.81 6.68 -52.49 -0.35 1.46 16 16 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 17 N -0.79 -19.88 10.97 55.55 0.61 -19.27 16 18 Si 0.90 18.13 29.59 -169.99 -5.03 13.10 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 C 0.11 0.75 6.90 -3.12 -0.02 0.73 16 23 N -0.73 -6.31 6.24 -59.20 -0.37 -6.68 16 24 C 0.52 6.17 8.43 -10.86 -0.09 6.08 16 25 O -0.54 -8.68 18.03 5.56 0.10 -8.58 16 26 C -0.15 -1.44 5.92 -26.74 -0.16 -1.60 16 27 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 28 H 0.08 0.72 7.56 -51.93 -0.39 0.33 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 32 H 0.11 2.03 7.06 -51.93 -0.37 1.66 16 33 H 0.09 1.43 8.05 -51.93 -0.42 1.02 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.12 3.14 6.22 -52.48 -0.33 2.82 16 38 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 39 H 0.08 0.50 7.91 -51.93 -0.41 0.09 16 40 H 0.08 0.40 7.89 -51.93 -0.41 -0.01 16 41 H 0.41 2.89 8.96 -40.82 -0.37 2.52 16 42 H 0.11 1.23 7.63 -51.93 -0.40 0.83 16 43 H 0.11 0.86 7.84 -51.93 -0.41 0.45 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -31.91 361.03 -8.60 -40.51 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.93 Total: 7.60 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.77 Total: -14.74 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.24 Total: -25.95 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.55 Total: -25.96 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.91 -8.60 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802199888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.173 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds