Wall clock time and date at job start Tue Mar 31 2020 11:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.88800 * 2 1 4 4 O 1.45200 * 109.47092 * 56.18789 * 3 2 1 5 5 C 1.34229 * 117.00090 * 180.02562 * 4 3 2 6 6 O 1.20832 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99903 * 180.02562 * 5 4 3 8 8 C 1.50701 * 109.47083 * 179.97438 * 7 5 4 9 9 C 1.37635 * 120.12788 * 264.72702 * 8 7 5 10 10 C 1.38615 * 120.24871 * 179.69879 * 9 8 7 11 11 C 1.38660 * 120.49765 * 0.60031 * 10 9 8 12 12 C 1.37594 * 120.24928 * 359.67773 * 11 10 9 13 13 C 1.40696 * 120.12537 * 85.00038 * 8 7 5 14 14 C 1.41396 * 120.24844 * 0.02562 * 13 8 7 15 15 H 1.08000 * 119.99846 * 334.06118 * 14 13 8 16 16 C 1.39941 * 120.00166 * 154.04860 * 14 13 8 17 17 N 1.30825 * 120.00073 * 343.66808 * 16 14 13 18 18 Si 1.86799 * 120.00177 * 163.66517 * 16 14 13 19 19 H 1.48500 * 109.47074 * 89.99929 * 18 16 14 20 20 H 1.48496 * 109.47218 * 210.00257 * 18 16 14 21 21 H 1.48503 * 109.46914 * 330.00141 * 18 16 14 22 22 C 1.54483 * 110.96852 * 236.19044 * 2 1 3 23 23 N 1.46771 * 105.47212 * 216.46094 * 22 2 1 24 24 C 1.34424 * 111.29712 * 17.28586 * 23 22 2 25 25 O 1.21282 * 124.93857 * 179.29634 * 24 23 22 26 26 C 1.51278 * 110.11579 * 359.16681 * 24 23 22 27 27 H 1.09002 * 109.46876 * 183.81380 * 1 2 3 28 28 H 1.09001 * 109.47292 * 303.80972 * 1 2 3 29 29 H 1.09000 * 109.46848 * 63.81038 * 1 2 3 30 30 H 1.08993 * 109.47295 * 176.18919 * 3 2 1 31 31 H 1.09004 * 109.46527 * 296.19263 * 3 2 1 32 32 H 1.09004 * 109.47211 * 299.99334 * 7 5 4 33 33 H 1.09000 * 109.47280 * 60.00112 * 7 5 4 34 34 H 1.08002 * 119.87752 * 359.97438 * 9 8 7 35 35 H 1.08000 * 119.75391 * 180.29871 * 10 9 8 36 36 H 1.08008 * 119.87354 * 179.70312 * 11 10 9 37 37 H 1.08010 * 120.12648 * 180.02562 * 12 11 10 38 38 H 0.97002 * 119.99988 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.24789 * 97.46440 * 22 2 1 40 40 H 1.08993 * 110.24496 * 335.46035 * 22 2 1 41 41 H 0.97001 * 124.34846 * 197.01234 * 23 22 2 42 42 H 1.08999 * 110.64322 * 225.35966 * 26 24 23 43 43 H 1.09005 * 110.38806 * 102.80905 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 8 1.5363 2.1533 1.1374 5 6 1.9189 3.4316 1.2833 6 8 2.6796 3.9292 0.4871 7 6 1.4007 4.2458 2.4406 8 6 1.9782 5.6362 2.3751 9 6 3.1086 5.9495 3.0950 10 6 3.6455 7.2259 3.0317 11 6 3.0448 8.2041 2.2539 12 6 1.9108 7.9150 1.5303 13 6 1.3604 6.6207 1.5821 14 6 0.1951 6.3123 0.8431 15 1 0.0047 5.2949 0.5348 16 6 -0.7117 7.3252 0.5115 17 7 -0.6659 8.4743 1.1353 18 14 -1.9876 7.0368 -0.8220 19 1 -3.2203 6.4742 -0.2143 20 1 -2.3075 8.3249 -1.4880 21 1 -1.4493 6.0818 -1.8239 22 6 2.0828 -0.8027 -1.1986 23 7 3.2852 -1.4780 -0.6964 24 6 3.3058 -1.5030 0.6475 25 8 4.1788 -2.0104 1.3195 26 6 2.0835 -0.8035 1.1997 27 1 -0.3633 -1.0254 0.0684 28 1 -0.3634 0.5718 0.8539 29 1 -0.3633 0.4536 -0.9222 30 1 3.1630 1.4034 0.0683 31 1 1.7812 1.9306 -0.9222 32 1 0.3133 4.3008 2.3881 33 1 1.6959 3.7740 3.3778 34 1 3.5817 5.1967 3.7081 35 1 4.5355 7.4616 3.5961 36 1 3.4689 9.1967 2.2157 37 1 1.4448 8.6784 0.9248 38 1 -1.2942 9.1765 0.9051 39 1 2.3418 -0.1297 -2.0160 40 1 1.3491 -1.5367 -1.5315 41 1 3.9743 -1.8609 -1.2616 42 1 2.3593 -0.1327 2.0133 43 1 1.3496 -1.5338 1.5408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802199888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:25 Heat of formation + Delta-G solvation = -133.926497 kcal Electronic energy + Delta-G solvation = -26372.294699 eV Core-core repulsion = 22573.734396 eV Total energy + Delta-G solvation = -3798.560303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87166 -41.12419 -39.42938 -38.27843 -37.06408 -35.51581 -34.09643 -33.51762 -31.37754 -29.58746 -29.16838 -27.77817 -27.00087 -26.51740 -22.92924 -22.75200 -21.66221 -21.01384 -20.65089 -19.08159 -18.55119 -18.35553 -17.59913 -17.55542 -17.07655 -16.54576 -16.19953 -16.06623 -15.62503 -15.44666 -15.06224 -14.95262 -14.52079 -14.35984 -14.24835 -13.74384 -13.57814 -13.56640 -13.34576 -13.11566 -12.91203 -12.73894 -12.70473 -12.60700 -12.52636 -12.12740 -12.04030 -11.83678 -11.60244 -11.37373 -11.34719 -11.24004 -11.01820 -10.94625 -10.17143 -9.25508 -9.22438 -8.60665 -6.31870 0.92178 1.09330 1.38707 1.39012 1.48356 1.49743 1.55790 1.85824 2.21235 2.40139 2.77923 3.29738 3.33203 3.49456 3.72436 3.83666 4.03412 4.10727 4.32775 4.36430 4.43410 4.51785 4.57295 4.58999 4.64415 4.69454 4.78692 4.80277 4.85737 5.00706 5.06867 5.12231 5.18313 5.34401 5.43106 5.49937 5.52259 5.75297 5.79237 5.95010 6.01432 6.13352 6.19848 6.38853 6.70501 6.94882 6.97092 7.08032 7.18213 8.35932 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.003700 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.366620 B = 7564.827861 C = 9022.281983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C 0.072 3.928 4 O -0.350 6.350 5 C 0.467 3.533 6 O -0.534 6.534 7 C -0.042 4.042 8 C -0.202 4.202 9 C -0.087 4.087 10 C -0.244 4.244 11 C -0.113 4.113 12 C -0.193 4.193 13 C 0.100 3.900 14 C -0.484 4.484 15 H 0.074 0.926 16 C 0.038 3.962 17 N -0.824 5.824 18 Si 0.972 3.028 19 H -0.254 1.254 20 H -0.270 1.270 21 H -0.263 1.263 22 C 0.113 3.887 23 N -0.723 5.723 24 C 0.511 3.489 25 O -0.589 6.589 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.287 0.713 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.418 0.582 42 H 0.094 0.906 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -16.790 -4.975 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.002 4.002 4 O -0.267 6.267 5 C 0.311 3.689 6 O -0.422 6.422 7 C -0.079 4.079 8 C -0.204 4.204 9 C -0.105 4.105 10 C -0.263 4.263 11 C -0.132 4.132 12 C -0.212 4.212 13 C 0.098 3.902 14 C -0.514 4.514 15 H 0.092 0.908 16 C -0.178 4.178 17 N -0.450 5.450 18 Si 0.793 3.207 19 H -0.179 1.179 20 H -0.195 1.195 21 H -0.187 1.187 22 C -0.011 4.011 23 N -0.378 5.378 24 C 0.299 3.701 25 O -0.470 6.470 26 C -0.185 4.185 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.258 0.742 42 H 0.113 0.887 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.360 -16.645 -4.816 17.488 hybrid contribution 0.272 0.498 -0.879 1.046 sum -2.088 -16.147 -5.695 17.248 Atomic orbital electron populations 1.21778 0.89786 1.04013 1.03566 1.21548 0.98988 0.90515 0.95339 1.23117 0.97620 0.91637 0.87820 1.86471 1.67233 1.24788 1.48242 1.24352 0.77752 0.80164 0.86607 1.90639 1.35056 1.71830 1.44699 1.19996 1.02710 0.90566 0.94585 1.19473 1.01207 0.94982 1.04706 1.20761 0.94897 0.96310 0.98493 1.20718 1.03490 0.94509 1.07613 1.20979 0.96051 0.98364 0.97767 1.21319 0.97367 0.98389 1.04129 1.17726 0.91789 0.91515 0.89209 1.19653 1.04485 0.95662 1.31552 0.90781 1.26695 1.00060 0.93909 0.97089 1.69878 1.34071 1.05502 1.35539 0.85353 0.78084 0.78933 0.78346 1.17855 1.19458 1.18702 1.22393 0.86787 0.96468 0.95444 1.46284 1.25553 1.59004 1.06971 1.21369 0.87159 0.78185 0.83433 1.90729 1.42514 1.49562 1.64191 1.22525 0.96258 1.00596 0.99086 0.89279 0.91868 0.91004 0.92922 0.90665 0.87132 0.85989 0.86492 0.86695 0.87585 0.88341 0.90239 0.88339 0.86431 0.74212 0.88721 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.37 71.98 0.60 -1.01 16 2 C -0.06 -0.97 0.81 -51.12 -0.04 -1.01 16 3 C 0.07 1.74 4.29 71.98 0.31 2.04 16 4 O -0.35 -10.36 9.06 -51.40 -0.47 -10.83 16 5 C 0.47 17.71 7.59 71.23 0.54 18.25 16 6 O -0.53 -24.49 15.78 21.95 0.35 -24.14 16 7 C -0.04 -1.56 5.29 29.10 0.15 -1.41 16 8 C -0.20 -9.48 4.43 -19.41 -0.09 -9.56 16 9 C -0.09 -3.82 9.66 22.22 0.21 -3.61 16 10 C -0.24 -10.92 10.05 22.46 0.23 -10.70 16 11 C -0.11 -5.47 10.02 22.22 0.22 -5.25 16 12 C -0.19 -10.40 8.68 22.73 0.20 -10.20 16 13 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 14 C -0.48 -25.18 8.14 23.46 0.19 -24.99 16 15 H 0.07 3.70 6.68 -2.91 -0.02 3.68 16 16 C 0.04 1.85 5.16 85.26 0.44 2.29 16 17 N -0.82 -42.47 10.97 21.83 0.24 -42.23 16 18 Si 0.97 37.18 29.59 68.60 2.03 39.21 16 19 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 20 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 22 C 0.11 1.14 6.90 86.83 0.60 1.74 16 23 N -0.72 -10.89 6.24 -459.79 -2.87 -13.76 16 24 C 0.51 11.60 8.43 87.90 0.74 12.34 16 25 O -0.59 -19.22 18.03 -3.04 -0.05 -19.28 16 26 C -0.14 -2.56 5.92 30.59 0.18 -2.38 16 27 H 0.09 0.63 8.06 -2.39 -0.02 0.61 16 28 H 0.06 0.99 7.56 -2.39 -0.02 0.97 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 32 H 0.11 4.11 7.06 -2.39 -0.02 4.09 16 33 H 0.12 3.70 8.05 -2.39 -0.02 3.68 16 34 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.10 5.55 6.22 -2.91 -0.02 5.54 16 38 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 39 H 0.10 0.82 7.91 -2.39 -0.02 0.80 16 40 H 0.12 0.53 7.89 -2.39 -0.02 0.51 16 41 H 0.42 5.09 8.96 -92.71 -0.83 4.26 16 42 H 0.09 2.02 7.63 -2.39 -0.02 2.00 16 43 H 0.13 1.71 7.84 -2.38 -0.02 1.69 16 Total: -1.00 -72.35 361.03 3.81 -68.54 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.21 Total: 30.74 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.37 Total: -28.25 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -2.63 Total: -55.99 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.17 Total: -54.25 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -72.35 3.81 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802199888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.384 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds