Wall clock time and date at job start Tue Mar 31 2020 12:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47338 * 2 1 4 4 H 1.08999 * 109.46964 * 174.13757 * 3 2 1 5 5 N 1.46896 * 109.47011 * 294.13467 * 3 2 1 6 6 C 1.46897 * 111.00264 * 274.83478 * 5 3 2 7 7 C 1.52999 * 109.47489 * 176.18768 * 6 5 3 8 8 C 1.50695 * 109.47426 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99982 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00142 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99876 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00187 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47120 * 59.99951 * 12 10 8 14 14 H 1.48501 * 109.47221 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47337 * 300.00219 * 12 10 8 16 16 C 1.50694 * 109.47081 * 54.13819 * 3 2 1 17 17 C 1.38172 * 120.02824 * 265.00030 * 16 3 2 18 18 C 1.38234 * 120.05693 * 180.02562 * 17 16 3 19 19 C 1.38285 * 120.11446 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.97459 * 180.02562 * 19 18 17 21 21 F 1.39895 * 109.47161 * 0.02562 * 20 19 18 22 22 F 1.39906 * 109.47190 * 119.99986 * 20 19 18 23 23 F 1.39902 * 109.47159 * 240.00010 * 20 19 18 24 24 C 1.38124 * 120.05735 * 0.02562 * 19 18 17 25 25 C 1.38707 * 120.03057 * 84.72398 * 16 3 2 26 26 O 1.35904 * 120.05450 * 0.02562 * 25 16 3 27 27 H 1.09004 * 109.47457 * 297.47921 * 1 2 3 28 28 H 1.09001 * 109.47229 * 57.47481 * 1 2 3 29 29 H 1.08999 * 109.47693 * 177.47679 * 1 2 3 30 30 H 1.09004 * 109.47029 * 120.00251 * 2 1 3 31 31 H 1.08999 * 109.47282 * 239.99742 * 2 1 3 32 32 H 1.00907 * 111.00230 * 38.78867 * 5 3 2 33 33 H 1.09007 * 109.47171 * 296.18701 * 6 5 3 34 34 H 1.08995 * 109.47417 * 56.18616 * 6 5 3 35 35 H 1.09007 * 109.46860 * 300.00124 * 7 6 5 36 36 H 1.09005 * 109.46782 * 59.99464 * 7 6 5 37 37 H 0.96995 * 120.00251 * 180.02562 * 11 10 8 38 38 H 1.08002 * 119.96972 * 359.97172 * 17 16 3 39 39 H 1.08002 * 119.94748 * 179.97438 * 18 17 16 40 40 H 1.07994 * 120.03537 * 179.97438 * 24 19 18 41 41 H 0.96694 * 113.99982 * 90.00249 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4442 0.1050 5 7 1.6693 2.0929 -1.2639 6 6 2.6610 1.8128 -2.3108 7 6 2.1941 2.4253 -3.6328 8 6 3.2117 2.1385 -4.7066 9 1 4.1023 1.5753 -4.4699 10 6 3.0058 2.5952 -5.9912 11 7 1.9216 3.2815 -6.2792 12 14 4.2676 2.2403 -7.3221 13 1 4.4174 0.7716 -7.4831 14 1 3.8143 2.8347 -8.6052 15 1 5.5739 2.8317 -6.9361 16 6 1.4227 2.1935 1.1514 17 6 0.2809 2.9460 0.9535 18 6 -0.2855 3.6356 2.0091 19 6 0.2884 3.5740 3.2658 20 6 -0.3321 4.3265 4.4146 21 9 -1.4695 5.0067 3.9664 22 9 -0.6948 3.4250 5.4211 23 9 0.5917 5.2461 4.9229 24 6 1.4298 2.8232 3.4690 25 6 1.9970 2.1255 2.4122 26 8 3.1172 1.3819 2.6106 27 1 -0.3634 0.4742 0.9117 28 1 -0.3634 0.5525 -0.8665 29 1 -0.3634 -1.0266 -0.0452 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 0.7452 1.8132 -1.5571 33 1 3.6202 2.2466 -2.0281 34 1 2.7705 0.7347 -2.4285 35 1 1.2348 1.9915 -3.9154 36 1 2.0846 3.5034 -3.5150 37 1 1.7765 3.6025 -7.1830 38 1 -0.1689 2.9961 -0.0272 39 1 -1.1778 4.2235 1.8523 40 1 1.8779 2.7757 4.4505 41 1 3.9416 1.8697 2.4782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810236110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:41 Heat of formation + Delta-G solvation = -182.411627 kcal Electronic energy + Delta-G solvation = -26538.507903 eV Core-core repulsion = 22195.988386 eV Total energy + Delta-G solvation = -4342.519517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.35522 -47.87393 -47.81573 -40.47076 -37.37454 -36.93600 -33.81941 -32.13518 -31.42141 -30.18952 -28.98707 -26.92700 -25.01821 -24.11178 -22.75071 -22.31542 -20.69744 -20.01243 -19.17551 -18.68179 -18.56942 -17.35782 -16.48607 -16.10047 -15.93325 -15.28725 -15.18665 -14.71729 -14.65132 -14.50300 -14.41733 -14.25899 -14.10205 -13.97794 -13.81553 -13.66637 -13.28828 -13.14025 -12.63214 -12.43424 -12.23295 -12.08982 -11.99514 -11.44934 -11.21974 -11.03439 -10.98145 -10.86658 -10.70277 -10.49941 -10.09943 -9.47150 -9.24189 -9.11619 -8.91196 -8.40280 -7.96781 -6.04517 -4.07410 0.71449 1.00472 2.44997 3.17821 3.30188 3.35037 3.36969 3.48775 3.77664 4.09332 4.23330 4.30170 4.46078 4.67595 4.74802 4.91222 5.02349 5.10626 5.23145 5.30631 5.31818 5.42444 5.63304 5.72115 5.75741 5.85239 5.98855 6.00057 6.13307 6.21420 6.27609 6.31984 6.39066 6.48069 6.88576 7.35109 7.40411 7.63941 7.73097 7.83969 8.00459 8.37144 8.99370 9.56714 11.06817 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.002679 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.486721 B =10448.700343 C =10912.887762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.146 4.146 3 C 0.123 3.877 4 H 0.089 0.911 5 N -0.686 5.686 6 C 0.066 3.934 7 C 0.025 3.975 8 C -0.523 4.523 9 H 0.054 0.946 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.047 4.047 17 C -0.080 4.080 18 C -0.083 4.083 19 C -0.180 4.180 20 C 0.510 3.490 21 F -0.177 7.177 22 F -0.179 7.179 23 F -0.178 7.178 24 C -0.099 4.099 25 C 0.103 3.897 26 O -0.490 6.490 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.339 0.661 33 H 0.059 0.941 34 H 0.019 0.981 35 H 0.013 0.987 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -1.387 21.687 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.012 3.988 4 H 0.107 0.893 5 N -0.317 5.317 6 C -0.062 4.062 7 C -0.012 4.012 8 C -0.562 4.562 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.048 4.048 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.181 4.181 20 C 0.456 3.544 21 F -0.158 7.158 22 F -0.160 7.160 23 F -0.159 7.159 24 C -0.117 4.117 25 C 0.058 3.942 26 O -0.301 6.301 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.092 -1.115 21.841 22.249 hybrid contribution 0.747 -0.553 -0.842 1.254 sum -3.345 -1.668 21.000 21.330 Atomic orbital electron populations 1.21841 0.95689 1.01761 1.01957 1.22107 0.96682 0.96921 1.02842 1.20388 0.99350 0.90440 0.88621 0.89321 1.60794 1.06786 1.60967 1.03201 1.22196 0.94179 0.97578 0.92197 1.19072 0.96355 0.96837 0.88960 1.21113 1.06160 1.34918 0.94030 0.92798 1.24996 0.95518 0.95095 0.98674 1.69952 1.26159 1.36795 1.20287 0.86648 0.81736 0.78521 0.81024 1.20286 1.21253 1.20205 1.20514 0.95266 0.95475 0.93569 1.21016 0.94616 0.94904 0.99255 1.21062 0.99793 0.98380 0.90899 1.19703 1.00019 1.04556 0.93838 1.18290 0.76161 0.77447 0.82468 1.93167 1.52531 1.81082 1.89022 1.93214 1.92062 1.67515 1.63219 1.93215 1.66136 1.68082 1.88508 1.20983 0.95376 0.95374 0.99995 1.18033 0.90465 0.94417 0.91325 1.84842 1.14760 1.38421 1.92052 0.92558 0.92287 0.92695 0.91248 0.91103 0.84137 0.92276 0.96256 0.96843 0.95638 0.92882 0.83616 0.84320 0.84697 0.75206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.00 37.16 0.33 -1.42 16 2 C -0.15 -1.79 5.79 -26.73 -0.15 -1.94 16 3 C 0.12 1.60 2.28 -68.87 -0.16 1.44 16 4 H 0.09 1.17 7.40 -51.93 -0.38 0.78 16 5 N -0.69 -10.85 5.27 -107.96 -0.57 -11.42 16 6 C 0.07 1.29 5.42 -3.83 -0.02 1.27 16 7 C 0.03 0.63 5.19 -27.89 -0.14 0.48 16 8 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 9 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 12 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C -0.05 -0.56 4.13 -104.48 -0.43 -0.99 16 17 C -0.08 -0.93 7.97 -39.61 -0.32 -1.24 16 18 C -0.08 -0.89 9.43 -39.57 -0.37 -1.26 16 19 C -0.18 -1.93 5.37 -104.65 -0.56 -2.49 16 20 C 0.51 5.36 3.32 36.01 0.12 5.48 16 21 F -0.18 -1.87 15.97 2.25 0.04 -1.84 16 22 F -0.18 -1.93 17.24 2.25 0.04 -1.89 16 23 F -0.18 -1.93 17.24 2.25 0.04 -1.90 16 24 C -0.10 -1.03 9.54 -39.43 -0.38 -1.41 16 25 C 0.10 1.13 6.68 -39.21 -0.26 0.87 16 26 O -0.49 -4.77 12.65 -19.44 -0.25 -5.02 16 27 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 28 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.93 7.31 -51.93 -0.38 0.55 16 32 H 0.34 5.21 5.96 -39.29 -0.23 4.98 16 33 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 34 H 0.02 0.37 7.30 -51.93 -0.38 -0.01 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.15 1.69 6.89 -52.49 -0.36 1.33 16 39 H 0.14 1.27 7.15 -52.49 -0.38 0.89 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.39 2.25 9.06 45.56 0.41 2.66 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -30.06 350.00 -6.92 -36.98 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.45 Total: 3.56 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.75 Total: -14.39 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.17 Total: -37.04 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.25 Total: -5.02 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.11 Total: -5.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.06 -6.92 -36.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810236110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.435 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds