Wall clock time and date at job start Tue Mar 31 2020 12:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47338 * 2 1 4 4 H 1.08999 * 109.46964 * 174.13757 * 3 2 1 5 5 N 1.46896 * 109.47011 * 294.13467 * 3 2 1 6 6 C 1.46897 * 111.00264 * 274.83478 * 5 3 2 7 7 C 1.52999 * 109.47489 * 176.18768 * 6 5 3 8 8 C 1.50695 * 109.47426 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99982 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00142 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99876 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00187 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47120 * 59.99951 * 12 10 8 14 14 H 1.48501 * 109.47221 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47337 * 300.00219 * 12 10 8 16 16 C 1.50694 * 109.47081 * 54.13819 * 3 2 1 17 17 C 1.38172 * 120.02824 * 265.00030 * 16 3 2 18 18 C 1.38234 * 120.05693 * 180.02562 * 17 16 3 19 19 C 1.38285 * 120.11446 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.97459 * 180.02562 * 19 18 17 21 21 F 1.39895 * 109.47161 * 0.02562 * 20 19 18 22 22 F 1.39906 * 109.47190 * 119.99986 * 20 19 18 23 23 F 1.39902 * 109.47159 * 240.00010 * 20 19 18 24 24 C 1.38124 * 120.05735 * 0.02562 * 19 18 17 25 25 C 1.38707 * 120.03057 * 84.72398 * 16 3 2 26 26 O 1.35904 * 120.05450 * 0.02562 * 25 16 3 27 27 H 1.09004 * 109.47457 * 297.47921 * 1 2 3 28 28 H 1.09001 * 109.47229 * 57.47481 * 1 2 3 29 29 H 1.08999 * 109.47693 * 177.47679 * 1 2 3 30 30 H 1.09004 * 109.47029 * 120.00251 * 2 1 3 31 31 H 1.08999 * 109.47282 * 239.99742 * 2 1 3 32 32 H 1.00907 * 111.00230 * 38.78867 * 5 3 2 33 33 H 1.09007 * 109.47171 * 296.18701 * 6 5 3 34 34 H 1.08995 * 109.47417 * 56.18616 * 6 5 3 35 35 H 1.09007 * 109.46860 * 300.00124 * 7 6 5 36 36 H 1.09005 * 109.46782 * 59.99464 * 7 6 5 37 37 H 0.96995 * 120.00251 * 180.02562 * 11 10 8 38 38 H 1.08002 * 119.96972 * 359.97172 * 17 16 3 39 39 H 1.08002 * 119.94748 * 179.97438 * 18 17 16 40 40 H 1.07994 * 120.03537 * 179.97438 * 24 19 18 41 41 H 0.96694 * 113.99982 * 90.00249 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4442 0.1050 5 7 1.6693 2.0929 -1.2639 6 6 2.6610 1.8128 -2.3108 7 6 2.1941 2.4253 -3.6328 8 6 3.2117 2.1385 -4.7066 9 1 4.1023 1.5753 -4.4699 10 6 3.0058 2.5952 -5.9912 11 7 1.9216 3.2815 -6.2792 12 14 4.2676 2.2403 -7.3221 13 1 4.4174 0.7716 -7.4831 14 1 3.8143 2.8347 -8.6052 15 1 5.5739 2.8317 -6.9361 16 6 1.4227 2.1935 1.1514 17 6 0.2809 2.9460 0.9535 18 6 -0.2855 3.6356 2.0091 19 6 0.2884 3.5740 3.2658 20 6 -0.3321 4.3265 4.4146 21 9 -1.4695 5.0067 3.9664 22 9 -0.6948 3.4250 5.4211 23 9 0.5917 5.2461 4.9229 24 6 1.4298 2.8232 3.4690 25 6 1.9970 2.1255 2.4122 26 8 3.1172 1.3819 2.6106 27 1 -0.3634 0.4742 0.9117 28 1 -0.3634 0.5525 -0.8665 29 1 -0.3634 -1.0266 -0.0452 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 0.7452 1.8132 -1.5571 33 1 3.6202 2.2466 -2.0281 34 1 2.7705 0.7347 -2.4285 35 1 1.2348 1.9915 -3.9154 36 1 2.0846 3.5034 -3.5150 37 1 1.7765 3.6025 -7.1830 38 1 -0.1689 2.9961 -0.0272 39 1 -1.1778 4.2235 1.8523 40 1 1.8779 2.7757 4.4505 41 1 3.9416 1.8697 2.4782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810236110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:41 Heat of formation + Delta-G solvation = -200.675180 kcal Electronic energy + Delta-G solvation = -26539.299870 eV Core-core repulsion = 22195.988386 eV Total energy + Delta-G solvation = -4343.311484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.19345 -48.71111 -48.65715 -41.35335 -38.49513 -37.75488 -35.60882 -33.77990 -32.33962 -31.02224 -30.60688 -28.06012 -26.17326 -25.66019 -23.71878 -23.24976 -22.38776 -21.03182 -20.00298 -19.51816 -19.41436 -18.48903 -18.14845 -17.22542 -16.96328 -16.44651 -16.40179 -16.02059 -15.56064 -15.54884 -15.39774 -15.09983 -15.09590 -14.89220 -14.81760 -14.66411 -14.61204 -14.31876 -14.15697 -13.60825 -13.28946 -13.15929 -13.03666 -12.91356 -12.79910 -12.48450 -12.42429 -12.03329 -11.96056 -11.79019 -11.59516 -11.35292 -11.16883 -10.54659 -10.02377 -9.76708 -9.28749 -8.19164 -6.30008 -0.15146 0.17618 1.41571 1.43950 1.51849 1.61240 2.32973 2.41376 2.65517 2.95544 3.14736 3.21540 3.31427 3.40234 3.74836 3.84796 4.00469 4.03920 4.13599 4.31597 4.39443 4.56312 4.57449 4.59606 4.75923 4.84695 4.86791 4.99398 5.05986 5.09819 5.12271 5.25992 5.31577 5.36240 5.49307 5.63735 5.70807 5.81146 6.14853 6.27852 6.51391 6.76843 6.87435 7.39235 8.92555 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.002679 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.486721 B =10448.700343 C =10912.887762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.127 3.873 4 H 0.090 0.910 5 N -0.686 5.686 6 C 0.086 3.914 7 C 0.032 3.968 8 C -0.544 4.544 9 H 0.060 0.940 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.963 3.037 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.267 1.267 16 C -0.058 4.058 17 C -0.088 4.088 18 C -0.085 4.085 19 C -0.181 4.181 20 C 0.515 3.485 21 F -0.177 7.177 22 F -0.179 7.179 23 F -0.180 7.180 24 C -0.099 4.099 25 C 0.107 3.893 26 O -0.496 6.496 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.341 0.659 33 H 0.059 0.941 34 H 0.023 0.977 35 H -0.008 1.008 36 H -0.005 1.005 37 H 0.263 0.737 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -2.022 22.649 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.017 3.983 4 H 0.108 0.892 5 N -0.318 5.318 6 C -0.042 4.042 7 C -0.006 4.006 8 C -0.582 4.582 9 H 0.079 0.921 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.210 1.210 15 H -0.192 1.192 16 C -0.060 4.060 17 C -0.106 4.106 18 C -0.103 4.103 19 C -0.183 4.183 20 C 0.461 3.539 21 F -0.159 7.159 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.117 4.117 25 C 0.062 3.938 26 O -0.309 6.309 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.010 0.990 36 H 0.014 0.986 37 H 0.072 0.928 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.186 -1.754 22.827 23.115 hybrid contribution 0.448 -0.340 -1.068 1.207 sum -2.738 -2.094 21.759 22.030 Atomic orbital electron populations 1.21811 0.95050 1.02271 1.01802 1.22043 0.97218 0.96159 1.02607 1.20366 0.99577 0.90964 0.87392 0.89245 1.60681 1.06062 1.61770 1.03322 1.21780 0.94697 0.97078 0.90686 1.18916 0.95083 0.95041 0.91520 1.21589 1.06836 1.34791 0.95033 0.92129 1.25933 0.97562 0.94805 1.01313 1.70089 1.28156 1.37924 1.20917 0.85531 0.79157 0.78791 0.77744 1.19197 1.20995 1.19200 1.20422 0.95763 0.96193 0.93596 1.21012 0.94826 0.95359 0.99375 1.21179 1.00167 0.98244 0.90665 1.19788 1.00131 1.04529 0.93841 1.18215 0.76058 0.77321 0.82328 1.93166 1.52576 1.81099 1.89022 1.93214 1.92068 1.67542 1.63258 1.93213 1.66204 1.68151 1.88527 1.21155 0.95148 0.94880 1.00566 1.18003 0.90799 0.94100 0.90913 1.84797 1.15309 1.38827 1.91948 0.92211 0.92965 0.91796 0.90477 0.92194 0.83900 0.92295 0.95923 0.98985 0.98642 0.92795 0.84162 0.83093 0.83127 0.73107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.00 71.98 0.65 -2.63 16 2 C -0.14 -3.28 5.79 30.59 0.18 -3.11 16 3 C 0.13 3.19 2.28 44.17 0.10 3.29 16 4 H 0.09 2.23 7.40 -2.39 -0.02 2.22 16 5 N -0.69 -21.70 5.27 -495.48 -2.61 -24.31 16 6 C 0.09 3.36 5.42 86.30 0.47 3.83 16 7 C 0.03 1.63 5.19 29.85 0.16 1.78 16 8 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 9 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 10 C 0.00 0.11 5.46 84.66 0.46 0.58 16 11 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 12 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 C -0.06 -1.33 4.13 -19.77 -0.08 -1.41 16 17 C -0.09 -1.96 7.97 22.25 0.18 -1.79 16 18 C -0.08 -1.70 9.43 22.28 0.21 -1.49 16 19 C -0.18 -3.60 5.37 -19.88 -0.11 -3.70 16 20 C 0.51 10.00 3.32 71.24 0.24 10.23 16 21 F -0.18 -3.51 15.97 44.97 0.72 -2.79 16 22 F -0.18 -3.57 17.24 44.97 0.78 -2.79 16 23 F -0.18 -3.62 17.24 44.97 0.78 -2.84 16 24 C -0.10 -1.87 9.54 22.37 0.21 -1.66 16 25 C 0.11 2.16 6.68 22.51 0.15 2.31 16 26 O -0.50 -8.54 12.65 -92.46 -1.17 -9.71 16 27 H 0.06 1.25 6.54 -2.38 -0.02 1.23 16 28 H 0.05 1.19 6.38 -2.39 -0.02 1.17 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.52 7.31 -2.39 -0.02 1.51 16 32 H 0.34 10.61 5.96 -89.69 -0.53 10.08 16 33 H 0.06 2.30 8.13 -2.38 -0.02 2.28 16 34 H 0.02 0.86 7.30 -2.39 -0.02 0.85 16 35 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 36 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 37 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.14 3.26 6.89 -2.91 -0.02 3.24 16 39 H 0.15 2.58 7.15 -2.91 -0.02 2.56 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.41 3.76 9.06 -74.06 -0.67 3.09 16 Total: -1.00 -63.65 350.00 3.72 -59.94 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.12 Total: 16.36 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 3.04 Total: -23.74 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.33 Total: -79.91 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -1.17 Total: -9.71 kcal Atomic # 9 Polarization: -10.69 SS G_CDS: 2.27 Total: -8.42 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -63.65 3.72 -59.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810236110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.739 kcal (2) G-P(sol) polarization free energy of solvation -63.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds