Wall clock time and date at job start Tue Mar 31 2020 12:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 H 1.09008 * 109.47003 * 54.42378 * 3 2 1 5 5 N 1.46900 * 109.47106 * 294.43272 * 3 2 1 6 6 C 1.46895 * 111.00148 * 153.48531 * 5 3 2 7 7 C 1.53001 * 109.47273 * 174.78180 * 6 5 3 8 8 C 1.50696 * 109.47337 * 179.97438 * 7 6 5 9 9 H 1.07995 * 119.99959 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00007 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99754 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00014 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47465 * 90.00065 * 12 10 8 14 14 H 1.48501 * 109.47160 * 210.00066 * 12 10 8 15 15 H 1.48503 * 109.46918 * 329.99949 * 12 10 8 16 16 C 1.50693 * 109.47492 * 174.42651 * 3 2 1 17 17 C 1.38170 * 120.02570 * 99.72055 * 16 3 2 18 18 C 1.38246 * 120.05386 * 179.74997 * 17 16 3 19 19 C 1.38289 * 120.11364 * 0.55346 * 18 17 16 20 20 C 1.50691 * 119.97474 * 179.72600 * 19 18 17 21 21 F 1.39901 * 109.47286 * 269.97732 * 20 19 18 22 22 F 1.39900 * 109.47353 * 29.97711 * 20 19 18 23 23 F 1.39898 * 109.47379 * 149.98017 * 20 19 18 24 24 C 1.38126 * 120.05065 * 359.70463 * 19 18 17 25 25 C 1.38708 * 120.03318 * 280.00292 * 16 3 2 26 26 O 1.35906 * 120.05137 * 359.95447 * 25 16 3 27 27 H 1.09003 * 109.46554 * 186.15966 * 1 2 3 28 28 H 1.08997 * 109.47322 * 306.15262 * 1 2 3 29 29 H 1.08997 * 109.47231 * 66.16441 * 1 2 3 30 30 H 1.08996 * 109.47184 * 240.00338 * 2 1 3 31 31 H 1.08998 * 109.47345 * 120.00095 * 2 1 3 32 32 H 1.00898 * 111.00294 * 29.52494 * 5 3 2 33 33 H 1.09002 * 109.47088 * 294.77764 * 6 5 3 34 34 H 1.08992 * 109.47592 * 54.78157 * 6 5 3 35 35 H 1.08998 * 109.47316 * 300.00244 * 7 6 5 36 36 H 1.09005 * 109.47120 * 59.99628 * 7 6 5 37 37 H 0.97006 * 119.99872 * 180.02562 * 11 10 8 38 38 H 1.08004 * 119.97129 * 0.02869 * 17 16 3 39 39 H 1.08007 * 119.94338 * 180.26090 * 18 17 16 40 40 H 1.07999 * 120.02095 * 180.02562 * 24 19 18 41 41 H 0.96694 * 114.00383 * 90.00017 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 7 1.6631 2.0951 -1.2610 6 6 1.5477 3.5492 -1.0872 7 6 1.2829 4.2055 -2.4437 8 6 1.1639 5.6972 -2.2654 9 1 1.2664 6.1334 -1.2828 10 6 0.9242 6.5050 -3.3568 11 7 0.8198 7.8067 -3.2010 12 14 0.7462 5.7504 -5.0563 13 1 -0.6795 5.4165 -5.3029 14 1 1.2117 6.7204 -6.0798 15 1 1.5652 4.5142 -5.1372 16 6 3.5406 1.4449 0.1380 17 6 4.3373 1.6097 -0.9788 18 6 5.7140 1.6171 -0.8522 19 6 6.2974 1.4483 0.3902 20 6 7.7983 1.4507 0.5238 21 9 8.2815 0.1458 0.3794 22 9 8.3535 2.2659 -0.4684 23 9 8.1536 1.9427 1.7843 24 6 5.5053 1.2779 1.5089 25 6 4.1233 1.2758 1.3853 26 8 3.3419 1.1087 2.4846 27 1 -0.3632 -1.0218 0.1103 28 1 -0.3634 0.6062 0.8298 29 1 -0.3633 0.4153 -0.9400 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.8078 1.7058 -1.6281 33 1 0.7228 3.7698 -0.4098 34 1 2.4754 3.9401 -0.6695 35 1 2.1078 3.9849 -3.1213 36 1 0.3551 3.8147 -2.8616 37 1 0.6508 8.3750 -3.9688 38 1 3.8842 1.7373 -1.9508 39 1 6.3350 1.7503 -1.7257 40 1 5.9614 1.1465 2.4790 41 1 3.1279 0.1859 2.6785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810236111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:45 Heat of formation + Delta-G solvation = -180.336402 kcal Electronic energy + Delta-G solvation = -26757.176183 eV Core-core repulsion = 22414.746655 eV Total energy + Delta-G solvation = -4342.429528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.28436 -47.79108 -47.75476 -40.36889 -37.26629 -36.94232 -33.84125 -32.14685 -31.88300 -30.12971 -29.36128 -27.13661 -24.87944 -23.66904 -22.87516 -22.12747 -20.55106 -20.23699 -19.12681 -18.62348 -18.52897 -17.27215 -16.84892 -16.33786 -15.94683 -15.21658 -15.18903 -14.76209 -14.61369 -14.51010 -14.22131 -14.17345 -14.00069 -13.90498 -13.72457 -13.54768 -13.33609 -13.07446 -12.81352 -12.50834 -12.36353 -12.17460 -12.04057 -11.70158 -11.36456 -11.30612 -11.13516 -10.93701 -10.60579 -10.12252 -9.91296 -9.76381 -9.24857 -9.07110 -8.84331 -8.55117 -8.12400 -6.05379 -4.04058 0.76148 1.08299 2.51997 3.24829 3.30191 3.38200 3.42564 3.54578 3.83310 4.11545 4.28424 4.30396 4.44507 4.63338 4.76957 4.83982 4.95606 5.01670 5.21650 5.28943 5.32851 5.48078 5.55010 5.65033 5.76343 5.78922 5.91822 5.96699 6.09949 6.10708 6.13703 6.24966 6.40225 6.60591 6.73317 7.06334 7.32327 7.41195 7.50761 7.68682 7.84151 8.51786 8.99000 9.56606 11.08039 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.003785 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.096760 B = 7395.788321 C = 8926.487206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.121 3.879 4 H 0.065 0.935 5 N -0.690 5.690 6 C 0.073 3.927 7 C -0.007 4.007 8 C -0.522 4.522 9 H 0.070 0.930 10 C 0.068 3.932 11 N -0.903 5.903 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C -0.060 4.060 17 C -0.072 4.072 18 C -0.083 4.083 19 C -0.177 4.177 20 C 0.510 3.490 21 F -0.179 7.179 22 F -0.175 7.175 23 F -0.179 7.179 24 C -0.103 4.103 25 C 0.102 3.898 26 O -0.488 6.488 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.342 0.658 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.009 0.991 37 H 0.263 0.737 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.380 -20.362 8.826 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C 0.011 3.989 4 H 0.083 0.917 5 N -0.322 5.322 6 C -0.055 4.055 7 C -0.045 4.045 8 C -0.561 4.561 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.709 3.291 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.188 1.188 16 C -0.062 4.062 17 C -0.090 4.090 18 C -0.101 4.101 19 C -0.178 4.178 20 C 0.456 3.544 21 F -0.161 7.161 22 F -0.157 7.157 23 F -0.160 7.160 24 C -0.122 4.122 25 C 0.057 3.943 26 O -0.298 6.298 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.051 -19.543 8.534 23.166 hybrid contribution -0.633 -0.508 -0.313 0.870 sum 8.418 -20.050 8.221 23.248 Atomic orbital electron populations 1.21834 0.95278 1.01883 1.02399 1.21632 0.96155 0.95346 1.02421 1.20368 0.90104 0.94981 0.93471 0.91682 1.60557 1.39885 1.06143 1.25648 1.22021 0.99762 0.84096 0.99627 1.19515 0.96298 0.95998 0.92645 1.21062 1.49293 0.89605 0.96105 0.91176 1.25005 0.94584 0.94665 0.99100 1.69917 1.49739 1.03629 1.30916 0.86754 0.78691 0.79493 0.84209 1.20423 1.21451 1.18775 1.20543 0.96883 0.96883 0.91860 1.21212 0.91424 0.95864 1.00477 1.21075 0.96013 0.97135 0.95859 1.19743 0.90357 1.11307 0.96425 1.18295 0.88771 0.73670 0.73663 1.93212 1.89920 1.37490 1.95439 1.93204 1.87385 1.73148 1.61919 1.93186 1.93363 1.87839 1.41603 1.21011 0.93083 0.99921 0.98158 1.18073 0.88335 1.02051 0.85840 1.84866 1.69592 1.31532 1.43828 0.92379 0.92489 0.92137 0.90847 0.91939 0.83821 0.95752 0.91768 0.95732 0.97303 0.92715 0.82528 0.84561 0.84499 0.75731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.64 37.16 0.36 -1.02 16 2 C -0.12 -1.09 5.49 -26.73 -0.15 -1.24 16 3 C 0.12 1.51 1.91 -68.87 -0.13 1.37 16 4 H 0.07 0.91 7.55 -51.92 -0.39 0.51 16 5 N -0.69 -10.21 4.90 -107.96 -0.53 -10.74 16 6 C 0.07 1.40 5.39 -3.83 -0.02 1.38 16 7 C -0.01 -0.16 4.34 -27.88 -0.12 -0.28 16 8 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 9 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 12 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 16 C -0.06 -0.77 4.87 -104.48 -0.51 -1.28 16 17 C -0.07 -0.94 9.33 -39.60 -0.37 -1.31 16 18 C -0.08 -1.00 9.40 -39.56 -0.37 -1.37 16 19 C -0.18 -2.11 5.45 -104.65 -0.57 -2.68 16 20 C 0.51 5.92 3.36 36.00 0.12 6.04 16 21 F -0.18 -2.03 17.30 2.25 0.04 -1.99 16 22 F -0.18 -2.15 16.46 2.25 0.04 -2.11 16 23 F -0.18 -2.12 16.46 2.25 0.04 -2.08 16 24 C -0.10 -1.18 9.34 -39.43 -0.37 -1.55 16 25 C 0.10 1.20 6.67 -39.22 -0.26 0.94 16 26 O -0.49 -4.98 12.66 -19.45 -0.25 -5.23 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.57 6.67 -51.93 -0.35 0.22 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.47 7.63 -51.93 -0.40 0.07 16 32 H 0.34 4.70 6.64 -39.29 -0.26 4.44 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 1.32 7.97 -51.93 -0.41 0.90 16 35 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.16 2.15 7.14 -52.48 -0.37 1.77 16 39 H 0.14 1.46 7.60 -52.48 -0.40 1.06 16 40 H 0.14 1.36 7.60 -52.49 -0.40 0.96 16 41 H 0.39 2.05 8.63 45.56 0.39 2.44 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -31.49 351.35 -6.72 -38.21 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.63 Total: 3.10 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.82 Total: -14.24 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.24 Total: -37.85 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.25 Total: -5.23 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.49 -6.72 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810236111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.128 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds