Wall clock time and date at job start Tue Mar 31 2020 12:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 H 1.09008 * 109.47003 * 54.42378 * 3 2 1 5 5 N 1.46900 * 109.47106 * 294.43272 * 3 2 1 6 6 C 1.46895 * 111.00148 * 153.48531 * 5 3 2 7 7 C 1.53001 * 109.47273 * 174.78180 * 6 5 3 8 8 C 1.50696 * 109.47337 * 179.97438 * 7 6 5 9 9 H 1.07995 * 119.99959 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00007 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99754 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00014 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47465 * 90.00065 * 12 10 8 14 14 H 1.48501 * 109.47160 * 210.00066 * 12 10 8 15 15 H 1.48503 * 109.46918 * 329.99949 * 12 10 8 16 16 C 1.50693 * 109.47492 * 174.42651 * 3 2 1 17 17 C 1.38170 * 120.02570 * 99.72055 * 16 3 2 18 18 C 1.38246 * 120.05386 * 179.74997 * 17 16 3 19 19 C 1.38289 * 120.11364 * 0.55346 * 18 17 16 20 20 C 1.50691 * 119.97474 * 179.72600 * 19 18 17 21 21 F 1.39901 * 109.47286 * 269.97732 * 20 19 18 22 22 F 1.39900 * 109.47353 * 29.97711 * 20 19 18 23 23 F 1.39898 * 109.47379 * 149.98017 * 20 19 18 24 24 C 1.38126 * 120.05065 * 359.70463 * 19 18 17 25 25 C 1.38708 * 120.03318 * 280.00292 * 16 3 2 26 26 O 1.35906 * 120.05137 * 359.95447 * 25 16 3 27 27 H 1.09003 * 109.46554 * 186.15966 * 1 2 3 28 28 H 1.08997 * 109.47322 * 306.15262 * 1 2 3 29 29 H 1.08997 * 109.47231 * 66.16441 * 1 2 3 30 30 H 1.08996 * 109.47184 * 240.00338 * 2 1 3 31 31 H 1.08998 * 109.47345 * 120.00095 * 2 1 3 32 32 H 1.00898 * 111.00294 * 29.52494 * 5 3 2 33 33 H 1.09002 * 109.47088 * 294.77764 * 6 5 3 34 34 H 1.08992 * 109.47592 * 54.78157 * 6 5 3 35 35 H 1.08998 * 109.47316 * 300.00244 * 7 6 5 36 36 H 1.09005 * 109.47120 * 59.99628 * 7 6 5 37 37 H 0.97006 * 119.99872 * 180.02562 * 11 10 8 38 38 H 1.08004 * 119.97129 * 0.02869 * 17 16 3 39 39 H 1.08007 * 119.94338 * 180.26090 * 18 17 16 40 40 H 1.07999 * 120.02095 * 180.02562 * 24 19 18 41 41 H 0.96694 * 114.00383 * 90.00017 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 7 1.6631 2.0951 -1.2610 6 6 1.5477 3.5492 -1.0872 7 6 1.2829 4.2055 -2.4437 8 6 1.1639 5.6972 -2.2654 9 1 1.2664 6.1334 -1.2828 10 6 0.9242 6.5050 -3.3568 11 7 0.8198 7.8067 -3.2010 12 14 0.7462 5.7504 -5.0563 13 1 -0.6795 5.4165 -5.3029 14 1 1.2117 6.7204 -6.0798 15 1 1.5652 4.5142 -5.1372 16 6 3.5406 1.4449 0.1380 17 6 4.3373 1.6097 -0.9788 18 6 5.7140 1.6171 -0.8522 19 6 6.2974 1.4483 0.3902 20 6 7.7983 1.4507 0.5238 21 9 8.2815 0.1458 0.3794 22 9 8.3535 2.2659 -0.4684 23 9 8.1536 1.9427 1.7843 24 6 5.5053 1.2779 1.5089 25 6 4.1233 1.2758 1.3853 26 8 3.3419 1.1087 2.4846 27 1 -0.3632 -1.0218 0.1103 28 1 -0.3634 0.6062 0.8298 29 1 -0.3633 0.4153 -0.9400 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.8078 1.7058 -1.6281 33 1 0.7228 3.7698 -0.4098 34 1 2.4754 3.9401 -0.6695 35 1 2.1078 3.9849 -3.1213 36 1 0.3551 3.8147 -2.8616 37 1 0.6508 8.3750 -3.9688 38 1 3.8842 1.7373 -1.9508 39 1 6.3350 1.7503 -1.7257 40 1 5.9614 1.1465 2.4790 41 1 3.1279 0.1859 2.6785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810236111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:44 Heat of formation + Delta-G solvation = -200.648414 kcal Electronic energy + Delta-G solvation = -26758.056978 eV Core-core repulsion = 22414.746655 eV Total energy + Delta-G solvation = -4343.310323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.21319 -48.73219 -48.67295 -41.28704 -38.36573 -37.80359 -35.56829 -33.87072 -32.78733 -31.03810 -30.94404 -28.20894 -26.17896 -25.05133 -23.82131 -23.01061 -22.19361 -21.33623 -20.01709 -19.54486 -19.46348 -18.96195 -18.12695 -17.35369 -16.96846 -16.46768 -16.21746 -16.06306 -15.67213 -15.52347 -15.45009 -15.13762 -15.08082 -14.93074 -14.83627 -14.63295 -14.58871 -14.24511 -14.15236 -13.81938 -13.42390 -13.28075 -13.07215 -12.94950 -12.82679 -12.42774 -12.25894 -11.97295 -11.81514 -11.71797 -11.58096 -11.41383 -11.35962 -10.75916 -10.02794 -9.74583 -9.40248 -8.28841 -6.33752 -0.16955 0.17596 1.37834 1.40736 1.53333 1.59534 2.33492 2.37902 2.63236 2.93070 3.07233 3.15076 3.29353 3.38182 3.69934 3.87707 3.98454 4.05958 4.20090 4.36973 4.41399 4.47774 4.54036 4.61643 4.72207 4.88555 4.91486 4.96780 5.02629 5.08653 5.16715 5.20099 5.29067 5.41630 5.45688 5.51286 5.65513 5.68227 6.11217 6.26488 6.54341 6.75381 6.77900 7.31231 8.88198 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.003785 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.096760 B = 7395.788321 C = 8926.487206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C 0.124 3.876 4 H 0.051 0.949 5 N -0.681 5.681 6 C 0.091 3.909 7 C 0.000 4.000 8 C -0.535 4.535 9 H 0.026 0.974 10 C 0.005 3.995 11 N -0.953 5.953 12 Si 0.955 3.045 13 H -0.265 1.265 14 H -0.287 1.287 15 H -0.243 1.243 16 C -0.074 4.074 17 C -0.084 4.084 18 C -0.088 4.088 19 C -0.181 4.181 20 C 0.515 3.485 21 F -0.176 7.176 22 F -0.180 7.180 23 F -0.180 7.180 24 C -0.105 4.105 25 C 0.107 3.893 26 O -0.496 6.496 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.351 0.649 33 H 0.014 0.986 34 H 0.045 0.955 35 H 0.026 0.974 36 H 0.021 0.979 37 H 0.266 0.734 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.366 -23.033 8.416 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C 0.014 3.986 4 H 0.069 0.931 5 N -0.315 5.315 6 C -0.038 4.038 7 C -0.038 4.038 8 C -0.573 4.573 9 H 0.044 0.956 10 C -0.192 4.192 11 N -0.594 5.594 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.213 1.213 15 H -0.166 1.166 16 C -0.075 4.075 17 C -0.102 4.102 18 C -0.106 4.106 19 C -0.183 4.183 20 C 0.461 3.539 21 F -0.158 7.158 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.123 4.123 25 C 0.061 3.939 26 O -0.309 6.309 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.172 0.828 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.032 -22.261 8.147 25.367 hybrid contribution -0.615 0.344 -0.042 0.706 sum 8.417 -21.917 8.106 24.837 Atomic orbital electron populations 1.21836 0.94854 1.02904 1.01737 1.21611 0.96384 0.93012 1.03733 1.20405 0.90134 0.96572 0.91443 0.93112 1.60413 1.40326 1.03435 1.27306 1.21593 0.98347 0.86810 0.97048 1.19395 0.96737 0.92850 0.94836 1.21424 1.48883 0.92615 0.94387 0.95570 1.26030 0.94104 0.94981 1.04085 1.70081 1.51322 1.05511 1.32487 0.85584 0.79554 0.79148 0.77892 1.19023 1.21301 1.16594 1.20633 0.96904 0.97605 0.92367 1.21177 0.91918 0.96794 1.00284 1.21187 0.95871 0.97105 0.96484 1.19817 0.90529 1.11338 0.96573 1.18218 0.88600 0.73649 0.73467 1.93217 1.89884 1.37259 1.95414 1.93194 1.87456 1.73344 1.62149 1.93183 1.93367 1.87883 1.41662 1.21204 0.93033 0.99387 0.98693 1.18053 0.88570 1.01434 0.85804 1.84817 1.69271 1.33765 1.43038 0.90502 0.93116 0.92873 0.90504 0.89640 0.82801 0.96759 0.93591 0.95570 0.96059 0.92506 0.83416 0.83598 0.82981 0.73072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.64 71.98 0.69 -1.68 16 2 C -0.11 -1.75 5.49 30.60 0.17 -1.59 16 3 C 0.12 2.93 1.91 44.17 0.08 3.01 16 4 H 0.05 1.37 7.55 -2.38 -0.02 1.35 16 5 N -0.68 -19.44 4.90 -495.46 -2.43 -21.86 16 6 C 0.09 3.52 5.39 86.30 0.47 3.99 16 7 C 0.00 -0.02 4.34 29.85 0.13 0.11 16 8 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 9 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 10 C 0.00 0.27 5.47 84.66 0.46 0.74 16 11 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 12 Si 0.96 44.06 27.47 68.60 1.88 45.94 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 16 C -0.07 -1.79 4.87 -19.77 -0.10 -1.88 16 17 C -0.08 -2.12 9.33 22.26 0.21 -1.91 16 18 C -0.09 -2.07 9.40 22.28 0.21 -1.86 16 19 C -0.18 -4.09 5.45 -19.88 -0.11 -4.20 16 20 C 0.51 11.30 3.36 71.23 0.24 11.54 16 21 F -0.18 -3.74 17.30 44.97 0.78 -2.96 16 22 F -0.18 -4.25 16.46 44.97 0.74 -3.51 16 23 F -0.18 -4.02 16.46 44.97 0.74 -3.28 16 24 C -0.10 -2.22 9.34 22.36 0.21 -2.01 16 25 C 0.11 2.33 6.67 22.50 0.15 2.48 16 26 O -0.50 -9.03 12.66 -92.50 -1.17 -10.20 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.88 6.67 -2.39 -0.02 0.87 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.00 7.63 -2.39 -0.02 0.98 16 32 H 0.35 9.02 6.64 -89.70 -0.60 8.43 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 1.93 7.97 -2.39 -0.02 1.91 16 35 H 0.03 1.19 7.20 -2.39 -0.02 1.18 16 36 H 0.02 0.92 7.57 -2.38 -0.02 0.91 16 37 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 38 H 0.15 3.96 7.14 -2.91 -0.02 3.94 16 39 H 0.15 3.01 7.60 -2.91 -0.02 2.99 16 40 H 0.15 2.69 7.60 -2.91 -0.02 2.67 16 41 H 0.41 3.12 8.63 -74.06 -0.64 2.49 16 Total: -1.00 -68.97 351.35 3.69 -65.28 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.21 Total: 14.75 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.06 Total: -24.05 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.13 Total: -81.97 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.17 Total: -10.20 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 2.26 Total: -9.75 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -68.97 3.69 -65.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810236111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.366 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds