Wall clock time and date at job start Tue Mar 31 2020 11:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.41380 * 2 1 4 4 C 1.34781 * 120.00019 * 60.84375 * 3 2 1 5 5 O 1.21276 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99976 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47145 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47144 * 54.99847 * 7 6 4 9 9 C 1.50691 * 109.47168 * 294.99874 * 7 6 4 10 10 H 1.08006 * 119.99990 * 334.72098 * 9 7 6 11 11 C 1.37878 * 120.00277 * 154.72588 * 9 7 6 12 12 N 1.31519 * 119.99979 * 184.85378 * 11 9 7 13 13 Si 1.86796 * 119.99809 * 4.84724 * 11 9 7 14 14 H 1.48510 * 109.46967 * 84.64129 * 13 11 9 15 15 H 1.48494 * 109.47232 * 204.63923 * 13 11 9 16 16 H 1.48499 * 109.47275 * 324.64158 * 13 11 9 17 17 C 1.50701 * 109.47027 * 174.99756 * 7 6 4 18 18 C 1.38234 * 120.00027 * 55.27671 * 17 7 6 19 19 C 1.38234 * 119.99925 * 179.78792 * 18 17 7 20 20 C 1.38240 * 120.00038 * 0.44264 * 19 18 17 21 21 C 1.38232 * 119.99667 * 359.81168 * 20 19 18 22 22 C 1.38231 * 120.00534 * 359.97438 * 21 20 19 23 23 C 1.54486 * 110.37273 * 237.69904 * 2 1 3 24 24 C 1.54571 * 102.14678 * 225.82031 * 23 2 1 25 25 O 1.45838 * 104.44255 * 26.84942 * 24 23 2 26 26 C 1.34057 * 109.90597 * 329.39530 * 25 24 23 27 27 O 1.20826 * 125.09648 * 200.87512 * 26 25 24 28 28 H 1.08994 * 109.47400 * 299.15840 * 1 2 3 29 29 H 1.09001 * 109.46848 * 59.15887 * 1 2 3 30 30 H 1.08999 * 109.46632 * 179.15135 * 1 2 3 31 31 H 0.97002 * 119.99821 * 240.84135 * 3 2 1 32 32 H 1.09009 * 109.46936 * 299.99771 * 6 4 3 33 33 H 1.08992 * 109.47424 * 59.99158 * 6 4 3 34 34 H 0.96994 * 119.99313 * 179.97438 * 12 11 9 35 35 H 1.08001 * 120.00022 * 359.97438 * 18 17 7 36 36 H 1.07996 * 120.00125 * 180.27278 * 19 18 17 37 37 H 1.07992 * 119.99930 * 179.83615 * 20 19 18 38 38 H 1.07998 * 119.99718 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.00506 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.86730 * 343.98383 * 23 2 1 41 41 H 1.09000 * 110.87113 * 107.44778 * 23 2 1 42 42 H 1.08995 * 110.43903 * 268.10823 * 24 23 2 43 43 H 1.08997 * 110.44169 * 145.58856 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0410 1.3730 0.0000 4 6 1.7431 2.2029 1.0193 5 8 1.0517 1.8132 1.9363 6 6 2.2683 3.6155 1.0190 7 6 1.7871 4.3387 2.2785 8 1 2.0784 3.7669 3.1596 9 6 0.2866 4.4713 2.2393 10 1 -0.2309 4.4718 1.2913 11 6 -0.4258 4.5921 3.4136 12 7 -1.7406 4.6118 3.3861 13 14 0.4765 4.7277 5.0436 14 1 0.8536 6.1438 5.2843 15 1 -0.4083 4.2580 6.1397 16 1 1.7015 3.8893 5.0025 17 6 2.4111 5.7091 2.3401 18 6 2.2635 6.5840 1.2802 19 6 2.8322 7.8426 1.3386 20 6 3.5562 8.2230 2.4531 21 6 3.7081 7.3461 3.5108 22 6 3.1358 6.0891 3.4544 23 6 2.0678 -0.7739 -1.2241 24 6 3.1683 -1.6569 -0.5929 25 8 2.7428 -1.8348 0.7907 26 6 2.0567 -0.7580 1.1992 27 8 1.8851 -0.4399 2.3522 28 1 -0.3634 0.5007 0.8974 29 1 -0.3633 0.5269 -0.8824 30 1 -0.3632 -1.0276 -0.0152 31 1 2.5938 1.6847 -0.7336 32 1 3.3581 3.5979 1.0037 33 1 1.9010 4.1395 0.1368 34 1 -2.2416 4.6964 4.2122 35 1 1.7014 6.2854 0.4077 36 1 2.7132 8.5278 0.5123 37 1 4.0027 9.2053 2.4976 38 1 4.2734 7.6434 4.3817 39 1 3.2548 5.4038 4.2806 40 1 1.2852 -1.3880 -1.6697 41 1 2.4893 -0.0903 -1.9612 42 1 4.1324 -1.1500 -0.6324 43 1 3.2222 -2.6195 -1.1013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813297577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:03 Heat of formation + Delta-G solvation = -80.836478 kcal Electronic energy + Delta-G solvation = -27241.244706 eV Core-core repulsion = 23444.986559 eV Total energy + Delta-G solvation = -3796.258147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31729 -39.07147 -38.31445 -37.23405 -35.33707 -33.97770 -31.89117 -31.45652 -30.24156 -29.61410 -28.69027 -26.00834 -25.24712 -22.80478 -22.62967 -21.94951 -21.03607 -19.70814 -19.14278 -17.37459 -17.01320 -16.89462 -16.44029 -16.11588 -15.84775 -14.76089 -14.63738 -14.53848 -14.33351 -14.08879 -13.85590 -13.52484 -13.18038 -12.82291 -12.73119 -12.56702 -12.38436 -12.30319 -12.20204 -12.02800 -11.82941 -11.69926 -11.48375 -11.10521 -10.68518 -10.66914 -10.56730 -10.34201 -10.13198 -9.85459 -9.55235 -9.14632 -8.87132 -8.66631 -8.41845 -8.21305 -7.79546 -5.96056 -3.92070 2.07534 2.12041 2.17126 3.20753 3.40810 3.45248 3.50049 3.50806 3.51580 3.94815 4.02097 4.35802 4.51609 4.58752 4.61062 5.07303 5.15247 5.24368 5.32518 5.45471 5.51196 5.53218 5.59177 5.67639 5.73998 5.85324 5.92304 5.98783 6.05468 6.21078 6.32076 6.48013 6.55561 6.61040 6.69466 6.81226 6.81884 7.06437 7.13257 7.25060 7.60408 7.70439 7.71780 7.82481 7.90292 8.54519 8.99263 9.03102 9.67868 11.16910 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.004441 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.263074 B = 6303.942751 C = 7083.466179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 N -0.736 5.736 4 C 0.502 3.498 5 O -0.459 6.459 6 C -0.110 4.110 7 C 0.048 3.952 8 H 0.055 0.945 9 C -0.481 4.481 10 H 0.072 0.928 11 C 0.084 3.916 12 N -0.897 5.897 13 Si 0.867 3.133 14 H -0.273 1.273 15 H -0.293 1.293 16 H -0.262 1.262 17 C -0.038 4.038 18 C -0.108 4.108 19 C -0.124 4.124 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.159 4.159 24 C 0.055 3.945 25 O -0.354 6.354 26 C 0.465 3.535 27 O -0.402 6.402 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.915 -6.689 -13.271 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 N -0.397 5.397 4 C 0.288 3.712 5 O -0.326 6.326 6 C -0.151 4.151 7 C 0.028 3.972 8 H 0.073 0.927 9 C -0.519 4.519 10 H 0.090 0.910 11 C -0.118 4.118 12 N -0.535 5.535 13 Si 0.696 3.304 14 H -0.199 1.199 15 H -0.219 1.219 16 H -0.187 1.187 17 C -0.038 4.038 18 C -0.126 4.126 19 C -0.143 4.143 20 C -0.169 4.169 21 C -0.140 4.140 22 C -0.160 4.160 23 C -0.197 4.197 24 C -0.020 4.020 25 O -0.271 6.271 26 C 0.299 3.701 27 O -0.278 6.278 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.154 -6.983 -11.693 17.605 hybrid contribution 0.518 0.415 0.422 0.787 sum 11.673 -6.569 -11.271 17.506 Atomic orbital electron populations 1.22100 0.90903 1.02599 1.05714 1.21387 0.97381 0.84449 0.93172 1.46223 1.56711 1.10011 1.26706 1.20981 0.81145 0.87540 0.81532 1.90842 1.33076 1.75054 1.33636 1.21585 0.99364 0.91780 1.02329 1.18275 0.96980 0.87739 0.94168 0.92670 1.20570 0.87188 1.49548 0.94545 0.91042 1.24849 0.94500 0.93804 0.98653 1.69878 1.05628 1.50298 1.27691 0.87057 0.80353 0.78643 0.84373 1.19897 1.21949 1.18685 1.20780 0.91326 0.99232 0.92483 1.20918 0.99118 0.93323 0.99208 1.21040 0.98804 0.96514 0.97902 1.20852 1.02057 0.99110 0.94906 1.20964 1.00511 0.94363 0.98142 1.21099 0.99422 0.96697 0.98747 1.23272 0.99684 0.99588 0.97176 1.24052 0.97661 1.01920 0.78362 1.87065 1.68147 1.41239 1.30668 1.23461 0.76653 0.79046 0.90916 1.90854 1.53033 1.63587 1.20344 0.88532 0.91023 0.91908 0.76796 0.91370 0.89700 0.92847 0.86375 0.87156 0.87365 0.87325 0.87251 0.87945 0.87978 0.89801 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.37 37.16 0.31 -1.91 16 2 C 0.13 1.63 0.97 -131.88 -0.13 1.50 16 3 N -0.74 -10.06 5.14 -47.66 -0.25 -10.31 16 4 C 0.50 9.68 7.00 -10.98 -0.08 9.61 16 5 O -0.46 -11.35 10.83 -17.20 -0.19 -11.54 16 6 C -0.11 -2.02 4.84 -27.88 -0.13 -2.15 16 7 C 0.05 1.10 1.24 -92.93 -0.12 0.99 16 8 H 0.06 1.42 5.26 -51.93 -0.27 1.14 16 9 C -0.48 -13.31 7.19 -34.44 -0.25 -13.56 16 10 H 0.07 2.12 8.05 -52.48 -0.42 1.69 16 11 C 0.08 2.52 5.47 -17.82 -0.10 2.42 16 12 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 13 Si 0.87 23.26 24.76 -169.99 -4.21 19.05 16 14 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 16 H -0.26 -6.85 5.95 56.52 0.34 -6.51 16 17 C -0.04 -0.80 4.30 -104.62 -0.45 -1.25 16 18 C -0.11 -2.05 8.94 -39.58 -0.35 -2.40 16 19 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 20 C -0.15 -2.49 10.05 -39.58 -0.40 -2.89 16 21 C -0.12 -2.17 10.05 -39.59 -0.40 -2.56 16 22 C -0.14 -2.90 8.15 -39.58 -0.32 -3.22 16 23 C -0.16 -1.13 6.51 -25.13 -0.16 -1.29 16 24 C 0.05 0.40 7.90 37.98 0.30 0.70 16 25 O -0.35 -4.76 11.05 -38.46 -0.43 -5.19 16 26 C 0.46 7.77 7.27 36.32 0.26 8.03 16 27 O -0.40 -8.93 15.50 -26.18 -0.41 -9.33 16 28 H 0.10 1.90 6.33 -51.93 -0.33 1.57 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.40 3.74 8.19 -40.82 -0.33 3.40 16 32 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 33 H 0.08 1.40 7.33 -51.93 -0.38 1.02 16 34 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 35 H 0.12 2.13 7.37 -52.49 -0.39 1.75 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.11 2.26 6.76 -52.49 -0.36 1.91 16 40 H 0.10 0.57 7.81 -51.93 -0.41 0.17 16 41 H 0.10 0.46 7.63 -51.93 -0.40 0.06 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -37.99 347.65 -7.73 -45.72 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.87 Total: 4.42 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.41 Total: -10.48 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.53 Total: -37.90 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.02 Total: -26.06 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.21 Total: 19.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.99 -7.73 -45.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813297577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.115 kcal (2) G-P(sol) polarization free energy of solvation -37.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds