Wall clock time and date at job start Tue Mar 31 2020 11:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.41380 * 2 1 4 4 C 1.34781 * 120.00019 * 60.84375 * 3 2 1 5 5 O 1.21276 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99976 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47145 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47144 * 54.99847 * 7 6 4 9 9 C 1.50691 * 109.47168 * 294.99874 * 7 6 4 10 10 H 1.08006 * 119.99990 * 334.72098 * 9 7 6 11 11 C 1.37878 * 120.00277 * 154.72588 * 9 7 6 12 12 N 1.31519 * 119.99979 * 184.85378 * 11 9 7 13 13 Si 1.86796 * 119.99809 * 4.84724 * 11 9 7 14 14 H 1.48510 * 109.46967 * 84.64129 * 13 11 9 15 15 H 1.48494 * 109.47232 * 204.63923 * 13 11 9 16 16 H 1.48499 * 109.47275 * 324.64158 * 13 11 9 17 17 C 1.50701 * 109.47027 * 174.99756 * 7 6 4 18 18 C 1.38234 * 120.00027 * 55.27671 * 17 7 6 19 19 C 1.38234 * 119.99925 * 179.78792 * 18 17 7 20 20 C 1.38240 * 120.00038 * 0.44264 * 19 18 17 21 21 C 1.38232 * 119.99667 * 359.81168 * 20 19 18 22 22 C 1.38231 * 120.00534 * 359.97438 * 21 20 19 23 23 C 1.54486 * 110.37273 * 237.69904 * 2 1 3 24 24 C 1.54571 * 102.14678 * 225.82031 * 23 2 1 25 25 O 1.45838 * 104.44255 * 26.84942 * 24 23 2 26 26 C 1.34057 * 109.90597 * 329.39530 * 25 24 23 27 27 O 1.20826 * 125.09648 * 200.87512 * 26 25 24 28 28 H 1.08994 * 109.47400 * 299.15840 * 1 2 3 29 29 H 1.09001 * 109.46848 * 59.15887 * 1 2 3 30 30 H 1.08999 * 109.46632 * 179.15135 * 1 2 3 31 31 H 0.97002 * 119.99821 * 240.84135 * 3 2 1 32 32 H 1.09009 * 109.46936 * 299.99771 * 6 4 3 33 33 H 1.08992 * 109.47424 * 59.99158 * 6 4 3 34 34 H 0.96994 * 119.99313 * 179.97438 * 12 11 9 35 35 H 1.08001 * 120.00022 * 359.97438 * 18 17 7 36 36 H 1.07996 * 120.00125 * 180.27278 * 19 18 17 37 37 H 1.07992 * 119.99930 * 179.83615 * 20 19 18 38 38 H 1.07998 * 119.99718 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.00506 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.86730 * 343.98383 * 23 2 1 41 41 H 1.09000 * 110.87113 * 107.44778 * 23 2 1 42 42 H 1.08995 * 110.43903 * 268.10823 * 24 23 2 43 43 H 1.08997 * 110.44169 * 145.58856 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0410 1.3730 0.0000 4 6 1.7431 2.2029 1.0193 5 8 1.0517 1.8132 1.9363 6 6 2.2683 3.6155 1.0190 7 6 1.7871 4.3387 2.2785 8 1 2.0784 3.7669 3.1596 9 6 0.2866 4.4713 2.2393 10 1 -0.2309 4.4718 1.2913 11 6 -0.4258 4.5921 3.4136 12 7 -1.7406 4.6118 3.3861 13 14 0.4765 4.7277 5.0436 14 1 0.8536 6.1438 5.2843 15 1 -0.4083 4.2580 6.1397 16 1 1.7015 3.8893 5.0025 17 6 2.4111 5.7091 2.3401 18 6 2.2635 6.5840 1.2802 19 6 2.8322 7.8426 1.3386 20 6 3.5562 8.2230 2.4531 21 6 3.7081 7.3461 3.5108 22 6 3.1358 6.0891 3.4544 23 6 2.0678 -0.7739 -1.2241 24 6 3.1683 -1.6569 -0.5929 25 8 2.7428 -1.8348 0.7907 26 6 2.0567 -0.7580 1.1992 27 8 1.8851 -0.4399 2.3522 28 1 -0.3634 0.5007 0.8974 29 1 -0.3633 0.5269 -0.8824 30 1 -0.3632 -1.0276 -0.0152 31 1 2.5938 1.6847 -0.7336 32 1 3.3581 3.5979 1.0037 33 1 1.9010 4.1395 0.1368 34 1 -2.2416 4.6964 4.2122 35 1 1.7014 6.2854 0.4077 36 1 2.7132 8.5278 0.5123 37 1 4.0027 9.2053 2.4976 38 1 4.2734 7.6434 4.3817 39 1 3.2548 5.4038 4.2806 40 1 1.2852 -1.3880 -1.6697 41 1 2.4893 -0.0903 -1.9612 42 1 4.1324 -1.1500 -0.6324 43 1 3.2222 -2.6195 -1.1013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813297577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:03 Heat of formation + Delta-G solvation = -108.421180 kcal Electronic energy + Delta-G solvation = -27242.440869 eV Core-core repulsion = 23444.986559 eV Total energy + Delta-G solvation = -3797.454310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42457 -40.54716 -39.72739 -38.54828 -36.62078 -35.70574 -33.79525 -32.81077 -31.64940 -30.60872 -30.04747 -27.83734 -26.39301 -24.41233 -23.56882 -23.37549 -22.34192 -21.06001 -20.62540 -19.05982 -18.47203 -18.20062 -17.80403 -17.27236 -17.13791 -16.54706 -16.02720 -15.89422 -15.62408 -15.37512 -15.25136 -14.84541 -14.71048 -14.53315 -14.17171 -13.99527 -13.73709 -13.58085 -13.45508 -13.31363 -13.24468 -12.88733 -12.72063 -12.64251 -12.57628 -12.14459 -11.90658 -11.81550 -11.49514 -11.47438 -11.35997 -11.07948 -10.72657 -10.36916 -9.96218 -9.64553 -9.31736 -8.25720 -6.19667 0.64390 0.70696 0.92841 1.24486 1.28850 1.33918 1.93430 2.21228 2.35067 2.37080 2.94541 3.05289 3.18840 3.23776 3.68848 3.98367 4.06925 4.08555 4.27544 4.28404 4.32055 4.41405 4.48704 4.57702 4.60740 4.63541 4.67737 4.81363 4.84140 4.86183 4.96861 5.06775 5.21859 5.24518 5.36625 5.37881 5.48383 5.68544 5.74226 5.76934 5.80036 5.99567 6.30800 6.32490 6.48804 6.73221 6.78546 7.41998 7.61476 8.91237 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.004441 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.263074 B = 6303.942751 C = 7083.466179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.121 3.879 3 N -0.712 5.712 4 C 0.495 3.505 5 O -0.523 6.523 6 C -0.107 4.107 7 C 0.049 3.951 8 H 0.022 0.978 9 C -0.453 4.453 10 H 0.042 0.958 11 C 0.023 3.977 12 N -0.949 5.949 13 Si 0.915 3.085 14 H -0.258 1.258 15 H -0.304 1.304 16 H -0.262 1.262 17 C -0.062 4.062 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.141 4.141 21 C -0.125 4.125 22 C -0.165 4.165 23 C -0.139 4.139 24 C 0.045 3.955 25 O -0.369 6.369 26 C 0.460 3.540 27 O -0.476 6.476 28 H 0.033 0.967 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.422 0.578 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.257 0.743 35 H 0.122 0.878 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.142 0.858 42 H 0.103 0.897 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.229 -5.637 -16.912 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 N -0.373 5.373 4 C 0.282 3.718 5 O -0.396 6.396 6 C -0.146 4.146 7 C 0.030 3.970 8 H 0.040 0.960 9 C -0.491 4.491 10 H 0.060 0.940 11 C -0.174 4.174 12 N -0.591 5.591 13 Si 0.743 3.257 14 H -0.183 1.183 15 H -0.231 1.231 16 H -0.187 1.187 17 C -0.062 4.062 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.158 4.158 21 C -0.143 4.143 22 C -0.184 4.184 23 C -0.176 4.176 24 C -0.028 4.028 25 O -0.286 6.286 26 C 0.298 3.702 27 O -0.358 6.358 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.262 0.738 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.113 0.887 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.121 0.879 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 14.555 -5.944 -15.439 22.035 hybrid contribution -0.373 0.039 1.375 1.425 sum 14.183 -5.904 -14.064 20.828 Atomic orbital electron populations 1.22043 0.92249 1.03352 1.03439 1.21587 0.96474 0.84016 0.94746 1.45861 1.55814 1.09857 1.25794 1.21255 0.80341 0.88428 0.81819 1.90851 1.36048 1.76327 1.36358 1.21534 1.01384 0.91066 1.00656 1.18098 0.94069 0.89626 0.95256 0.96014 1.20808 0.89885 1.45793 0.92633 0.93996 1.25521 0.94998 0.95139 1.01714 1.70011 1.06980 1.54249 1.27901 0.86296 0.79058 0.79190 0.81176 1.18292 1.23109 1.18698 1.20490 0.93524 0.98056 0.94160 1.21055 0.99579 0.94214 0.98735 1.21454 0.97257 0.95810 0.99122 1.21350 1.00544 1.00266 0.93682 1.21305 0.99999 0.93268 0.99718 1.21169 1.00870 0.98099 0.98213 1.23381 1.00083 0.99421 0.94747 1.24647 0.98332 1.04535 0.75239 1.87027 1.67315 1.39927 1.34360 1.24136 0.75762 0.79376 0.90889 1.90815 1.55708 1.65872 1.23447 0.94753 0.88996 0.89888 0.73794 0.87921 0.87527 0.93386 0.85962 0.83545 0.83386 0.84677 0.88709 0.85473 0.84044 0.87854 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.37 71.98 0.60 -3.84 16 2 C 0.12 3.00 0.97 3.56 0.00 3.00 16 3 N -0.71 -18.52 5.14 -423.10 -2.18 -20.69 16 4 C 0.49 19.58 7.00 87.66 0.61 20.19 16 5 O -0.52 -27.86 10.83 18.75 0.20 -27.66 16 6 C -0.11 -3.87 4.84 29.85 0.14 -3.72 16 7 C 0.05 2.33 1.24 -12.29 -0.02 2.31 16 8 H 0.02 1.18 5.26 -2.39 -0.01 1.16 16 9 C -0.45 -26.31 7.19 25.60 0.18 -26.13 16 10 H 0.04 2.62 8.05 -2.91 -0.02 2.59 16 11 C 0.02 1.42 5.47 84.65 0.46 1.88 16 12 N -0.95 -63.79 13.96 21.45 0.30 -63.49 16 13 Si 0.91 50.80 24.76 68.60 1.70 52.50 16 14 H -0.26 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.30 -17.13 7.11 99.48 0.71 -16.42 16 16 H -0.26 -14.34 5.95 99.48 0.59 -13.75 16 17 C -0.06 -2.59 4.30 -19.86 -0.09 -2.68 16 18 C -0.12 -4.25 8.94 22.27 0.20 -4.05 16 19 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 20 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 21 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 22 C -0.17 -6.64 8.15 22.27 0.18 -6.46 16 23 C -0.14 -1.30 6.51 31.63 0.21 -1.09 16 24 C 0.05 0.47 7.90 72.52 0.57 1.04 16 25 O -0.37 -9.52 11.05 -50.09 -0.55 -10.08 16 26 C 0.46 15.78 7.27 71.44 0.52 16.29 16 27 O -0.48 -22.91 15.50 29.06 0.45 -22.46 16 28 H 0.03 1.45 6.33 -2.39 -0.02 1.43 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.42 6.43 8.19 -92.71 -0.76 5.67 16 32 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 33 H 0.11 3.37 7.33 -2.39 -0.02 3.36 16 34 H 0.26 16.58 8.31 -92.71 -0.77 15.81 16 35 H 0.12 4.20 7.37 -2.91 -0.02 4.18 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 39 H 0.09 3.99 6.76 -2.91 -0.02 3.97 16 40 H 0.13 0.69 7.81 -2.39 -0.02 0.67 16 41 H 0.14 0.31 7.63 -2.39 -0.02 0.29 16 42 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -95.99 347.65 4.34 -91.65 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.16 Total: 14.36 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.26 Total: -14.12 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -1.88 Total: -84.18 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: 0.10 Total: -60.20 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.70 Total: 52.50 kcal Total: -95.99 4.34 -91.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813297577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.775 kcal (2) G-P(sol) polarization free energy of solvation -95.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds