Wall clock time and date at job start Tue Mar 31 2020 11:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 110.32741 * 2 1 4 4 C 1.34767 * 120.00250 * 60.78592 * 3 2 1 5 5 O 1.21284 * 120.00489 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47202 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47162 * 305.00135 * 7 6 4 9 9 C 1.50697 * 109.46806 * 65.00193 * 7 6 4 10 10 H 1.08003 * 120.00621 * 31.90500 * 9 7 6 11 11 C 1.37883 * 120.00255 * 211.91090 * 9 7 6 12 12 N 1.31516 * 119.99425 * 5.82443 * 11 9 7 13 13 Si 1.86798 * 120.00451 * 185.82473 * 11 9 7 14 14 H 1.48504 * 109.46956 * 89.99951 * 13 11 9 15 15 H 1.48505 * 109.46890 * 209.99798 * 13 11 9 16 16 H 1.48501 * 109.47130 * 329.99767 * 13 11 9 17 17 C 1.50702 * 109.46943 * 184.99700 * 7 6 4 18 18 C 1.38232 * 119.99502 * 118.44164 * 17 7 6 19 19 C 1.38242 * 120.00031 * 179.97438 * 18 17 7 20 20 C 1.38235 * 119.99430 * 0.02562 * 19 18 17 21 21 C 1.38234 * 120.00214 * 359.97169 * 20 19 18 22 22 C 1.38228 * 120.00219 * 359.97438 * 21 20 19 23 23 C 1.54492 * 110.46057 * 237.69450 * 2 1 3 24 24 C 1.54580 * 102.14234 * 225.77254 * 23 2 1 25 25 O 1.45829 * 104.44295 * 26.84984 * 24 23 2 26 26 C 1.34071 * 109.90950 * 329.39321 * 25 24 23 27 27 O 1.20827 * 125.09538 * 200.83416 * 26 25 24 28 28 H 1.08999 * 109.46895 * 60.70578 * 1 2 3 29 29 H 1.08998 * 109.47324 * 180.70421 * 1 2 3 30 30 H 1.08998 * 109.47057 * 300.70557 * 1 2 3 31 31 H 0.97004 * 119.99503 * 240.78827 * 3 2 1 32 32 H 1.09000 * 109.47533 * 59.99773 * 6 4 3 33 33 H 1.08998 * 109.47146 * 299.99785 * 6 4 3 34 34 H 0.97001 * 119.99697 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.00244 * 0.25695 * 18 17 7 36 36 H 1.07994 * 120.00088 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99580 * 179.97438 * 20 19 18 38 38 H 1.08007 * 119.99884 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00452 * 179.97438 * 22 21 20 40 40 H 1.08995 * 110.86682 * 343.93145 * 23 2 1 41 41 H 1.08996 * 110.86530 * 107.61304 * 23 2 1 42 42 H 1.09003 * 110.43536 * 268.10891 * 24 23 2 43 43 H 1.08995 * 110.54007 * 145.64195 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0390 1.3738 0.0000 4 6 1.7389 2.2036 1.0186 5 8 1.0471 1.8133 1.9352 6 6 2.2620 3.6169 1.0183 7 6 1.7785 4.3400 2.2771 8 1 0.6919 4.2787 2.3366 9 6 2.3857 3.6905 3.4938 10 1 3.3684 3.2463 3.4353 11 6 1.6866 3.6631 4.6820 12 7 0.4469 4.1000 4.7256 13 14 2.5002 3.0055 6.2295 14 1 3.1797 4.1172 6.9421 15 1 1.4690 2.4071 7.1148 16 1 3.4987 1.9696 5.8619 17 6 2.1977 5.7863 2.2178 18 6 1.2405 6.7835 2.2107 19 6 1.6250 8.1103 2.1569 20 6 2.9667 8.4397 2.1096 21 6 3.9239 7.4424 2.1168 22 6 3.5395 6.1158 2.1717 23 6 2.0701 -0.7736 -1.2234 24 6 3.1713 -1.6547 -0.5907 25 8 2.7448 -1.8327 0.7924 26 6 2.0566 -0.7567 1.2000 27 8 1.8830 -0.4388 2.3527 28 1 -0.3633 0.5028 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 2.5919 1.6861 -0.7333 32 1 1.8946 4.1402 0.1355 33 1 3.3517 3.6010 1.0039 34 1 -0.0448 4.0812 5.5615 35 1 0.1924 6.5263 2.2519 36 1 0.8771 8.8894 2.1510 37 1 3.2670 9.4762 2.0672 38 1 4.9722 7.6997 2.0794 39 1 4.2873 5.3365 2.1768 40 1 1.2889 -1.3891 -1.6693 41 1 2.4945 -0.0899 -1.9586 42 1 4.1347 -1.1463 -0.6296 43 1 3.2292 -2.6176 -1.0981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813297578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:07 Heat of formation + Delta-G solvation = -84.293671 kcal Electronic energy + Delta-G solvation = -27233.350080 eV Core-core repulsion = 23436.942017 eV Total energy + Delta-G solvation = -3796.408062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22294 -38.86837 -38.12165 -37.10981 -35.23257 -33.82511 -31.77991 -31.19970 -30.00524 -29.55871 -28.51613 -25.69953 -25.10673 -22.88069 -22.62334 -21.65159 -20.89921 -19.65371 -19.14993 -17.29274 -16.88067 -16.49443 -16.17254 -16.03251 -15.65762 -14.71956 -14.44821 -14.39774 -14.20276 -14.02452 -13.82975 -13.44769 -13.06319 -12.75849 -12.54419 -12.37371 -12.32368 -12.18857 -11.98121 -11.86643 -11.57597 -11.56945 -11.46989 -10.79475 -10.65305 -10.57876 -10.49472 -10.23948 -10.05655 -9.98519 -9.35972 -9.03492 -8.71820 -8.55444 -8.23779 -8.04433 -7.60969 -5.84946 -3.83180 2.26399 2.28906 2.35800 3.31421 3.45491 3.51740 3.53559 3.57102 3.59711 3.99940 4.08722 4.40287 4.61310 4.66507 4.75668 5.12238 5.18967 5.29807 5.44700 5.50330 5.59842 5.66522 5.73307 5.77572 5.82778 5.85861 6.10232 6.20566 6.29445 6.39743 6.41695 6.54520 6.68040 6.80768 6.90911 6.92358 7.05296 7.31391 7.46598 7.55013 7.84079 7.93796 7.97164 8.00461 8.11640 8.44809 9.12680 9.15926 9.78355 11.25103 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004664 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.973592 B = 6002.049724 C = 7153.187960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 N -0.738 5.738 4 C 0.500 3.500 5 O -0.452 6.452 6 C -0.118 4.118 7 C 0.078 3.922 8 H 0.075 0.925 9 C -0.490 4.490 10 H 0.049 0.951 11 C 0.081 3.919 12 N -0.880 5.880 13 Si 0.884 3.116 14 H -0.284 1.284 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.023 4.023 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.156 4.156 21 C -0.132 4.132 22 C -0.116 4.116 23 C -0.159 4.159 24 C 0.054 3.946 25 O -0.355 6.355 26 C 0.459 3.541 27 O -0.390 6.390 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.396 0.604 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.258 0.742 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -4.918 -17.120 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 N -0.399 5.399 4 C 0.286 3.714 5 O -0.319 6.319 6 C -0.158 4.158 7 C 0.059 3.941 8 H 0.093 0.907 9 C -0.527 4.527 10 H 0.067 0.933 11 C -0.122 4.122 12 N -0.517 5.517 13 Si 0.713 3.287 14 H -0.210 1.210 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.023 4.023 18 C -0.138 4.138 19 C -0.146 4.146 20 C -0.174 4.174 21 C -0.150 4.150 22 C -0.134 4.134 23 C -0.197 4.197 24 C -0.020 4.020 25 O -0.273 6.273 26 C 0.293 3.707 27 O -0.266 6.266 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.278 -5.206 -15.512 16.688 hybrid contribution 0.836 -0.108 0.511 0.986 sum 4.113 -5.314 -15.001 16.437 Atomic orbital electron populations 1.22078 0.91352 1.02713 1.05024 1.21366 0.97071 0.84691 0.93272 1.46316 1.56975 1.09909 1.26740 1.21067 0.81477 0.87830 0.81058 1.90859 1.33635 1.75288 1.32077 1.21764 1.01082 0.91564 1.01397 1.17851 0.99959 0.85595 0.90658 0.90662 1.20627 1.02108 1.35972 0.93981 0.93322 1.24762 0.94329 0.94380 0.98763 1.69892 1.08815 1.46852 1.26107 0.86715 0.79403 0.78884 0.83737 1.21042 1.21353 1.19968 1.20788 0.92309 0.98123 0.91113 1.21110 0.99656 0.92181 1.00890 1.20991 0.95525 0.96285 1.01806 1.20795 0.93438 0.98060 1.05136 1.20974 0.98207 0.93549 1.02246 1.20948 0.96416 0.95130 1.00920 1.23259 0.99635 0.99574 0.97189 1.24029 0.97663 1.01799 0.78545 1.87074 1.68241 1.41386 1.30555 1.23462 0.77086 0.79126 0.91004 1.90918 1.52606 1.62911 1.20152 0.91268 0.91893 0.88869 0.76969 0.91701 0.90750 0.93240 0.86743 0.87636 0.87813 0.87684 0.86944 0.88080 0.88086 0.89874 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.39 37.16 0.31 -1.76 16 2 C 0.13 1.66 0.97 -131.88 -0.13 1.53 16 3 N -0.74 -10.40 5.14 -47.66 -0.25 -10.64 16 4 C 0.50 9.87 7.00 -10.99 -0.08 9.79 16 5 O -0.45 -11.34 10.81 -17.21 -0.19 -11.53 16 6 C -0.12 -2.25 4.92 -27.88 -0.14 -2.39 16 7 C 0.08 1.88 1.73 -92.92 -0.16 1.72 16 8 H 0.08 2.08 6.87 -51.93 -0.36 1.72 16 9 C -0.49 -13.56 6.45 -34.44 -0.22 -13.78 16 10 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 11 C 0.08 2.38 5.45 -17.82 -0.10 2.28 16 12 N -0.88 -26.59 12.81 55.43 0.71 -25.88 16 13 Si 0.88 23.50 29.54 -169.99 -5.02 18.47 16 14 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 16 H -0.27 -7.38 7.11 56.52 0.40 -6.98 16 17 C -0.02 -0.50 4.77 -104.62 -0.50 -1.00 16 18 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 19 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 20 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 21 C -0.13 -2.36 10.05 -39.59 -0.40 -2.75 16 22 C -0.12 -2.34 8.86 -39.59 -0.35 -2.69 16 23 C -0.16 -1.17 6.52 -25.12 -0.16 -1.34 16 24 C 0.05 0.44 7.90 37.99 0.30 0.74 16 25 O -0.35 -5.15 11.05 -38.49 -0.43 -5.58 16 26 C 0.46 8.15 7.27 36.31 0.26 8.41 16 27 O -0.39 -9.31 15.50 -26.18 -0.41 -9.71 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.69 6.28 -51.93 -0.33 1.37 16 31 H 0.40 3.95 8.19 -40.82 -0.33 3.62 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.32 7.66 -51.93 -0.40 0.92 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.11 2.45 7.95 -52.49 -0.42 2.04 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.11 2.19 7.70 -52.49 -0.40 1.78 16 40 H 0.10 0.57 7.82 -51.93 -0.41 0.16 16 41 H 0.10 0.49 7.63 -51.93 -0.40 0.09 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -37.08 357.33 -8.69 -45.78 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.97 Total: 3.73 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.54 Total: -10.02 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.46 Total: -36.52 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.02 Total: -26.82 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.08 -8.69 -45.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813297578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.518 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds