Wall clock time and date at job start Tue Mar 31 2020 11:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 110.32741 * 2 1 4 4 C 1.34767 * 120.00250 * 60.78592 * 3 2 1 5 5 O 1.21284 * 120.00489 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47202 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47162 * 305.00135 * 7 6 4 9 9 C 1.50697 * 109.46806 * 65.00193 * 7 6 4 10 10 H 1.08003 * 120.00621 * 31.90500 * 9 7 6 11 11 C 1.37883 * 120.00255 * 211.91090 * 9 7 6 12 12 N 1.31516 * 119.99425 * 5.82443 * 11 9 7 13 13 Si 1.86798 * 120.00451 * 185.82473 * 11 9 7 14 14 H 1.48504 * 109.46956 * 89.99951 * 13 11 9 15 15 H 1.48505 * 109.46890 * 209.99798 * 13 11 9 16 16 H 1.48501 * 109.47130 * 329.99767 * 13 11 9 17 17 C 1.50702 * 109.46943 * 184.99700 * 7 6 4 18 18 C 1.38232 * 119.99502 * 118.44164 * 17 7 6 19 19 C 1.38242 * 120.00031 * 179.97438 * 18 17 7 20 20 C 1.38235 * 119.99430 * 0.02562 * 19 18 17 21 21 C 1.38234 * 120.00214 * 359.97169 * 20 19 18 22 22 C 1.38228 * 120.00219 * 359.97438 * 21 20 19 23 23 C 1.54492 * 110.46057 * 237.69450 * 2 1 3 24 24 C 1.54580 * 102.14234 * 225.77254 * 23 2 1 25 25 O 1.45829 * 104.44295 * 26.84984 * 24 23 2 26 26 C 1.34071 * 109.90950 * 329.39321 * 25 24 23 27 27 O 1.20827 * 125.09538 * 200.83416 * 26 25 24 28 28 H 1.08999 * 109.46895 * 60.70578 * 1 2 3 29 29 H 1.08998 * 109.47324 * 180.70421 * 1 2 3 30 30 H 1.08998 * 109.47057 * 300.70557 * 1 2 3 31 31 H 0.97004 * 119.99503 * 240.78827 * 3 2 1 32 32 H 1.09000 * 109.47533 * 59.99773 * 6 4 3 33 33 H 1.08998 * 109.47146 * 299.99785 * 6 4 3 34 34 H 0.97001 * 119.99697 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.00244 * 0.25695 * 18 17 7 36 36 H 1.07994 * 120.00088 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99580 * 179.97438 * 20 19 18 38 38 H 1.08007 * 119.99884 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00452 * 179.97438 * 22 21 20 40 40 H 1.08995 * 110.86682 * 343.93145 * 23 2 1 41 41 H 1.08996 * 110.86530 * 107.61304 * 23 2 1 42 42 H 1.09003 * 110.43536 * 268.10891 * 24 23 2 43 43 H 1.08995 * 110.54007 * 145.64195 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0390 1.3738 0.0000 4 6 1.7389 2.2036 1.0186 5 8 1.0471 1.8133 1.9352 6 6 2.2620 3.6169 1.0183 7 6 1.7785 4.3400 2.2771 8 1 0.6919 4.2787 2.3366 9 6 2.3857 3.6905 3.4938 10 1 3.3684 3.2463 3.4353 11 6 1.6866 3.6631 4.6820 12 7 0.4469 4.1000 4.7256 13 14 2.5002 3.0055 6.2295 14 1 3.1797 4.1172 6.9421 15 1 1.4690 2.4071 7.1148 16 1 3.4987 1.9696 5.8619 17 6 2.1977 5.7863 2.2178 18 6 1.2405 6.7835 2.2107 19 6 1.6250 8.1103 2.1569 20 6 2.9667 8.4397 2.1096 21 6 3.9239 7.4424 2.1168 22 6 3.5395 6.1158 2.1717 23 6 2.0701 -0.7736 -1.2234 24 6 3.1713 -1.6547 -0.5907 25 8 2.7448 -1.8327 0.7924 26 6 2.0566 -0.7567 1.2000 27 8 1.8830 -0.4388 2.3527 28 1 -0.3633 0.5028 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 2.5919 1.6861 -0.7333 32 1 1.8946 4.1402 0.1355 33 1 3.3517 3.6010 1.0039 34 1 -0.0448 4.0812 5.5615 35 1 0.1924 6.5263 2.2519 36 1 0.8771 8.8894 2.1510 37 1 3.2670 9.4762 2.0672 38 1 4.9722 7.6997 2.0794 39 1 4.2873 5.3365 2.1768 40 1 1.2889 -1.3891 -1.6693 41 1 2.4945 -0.0899 -1.9586 42 1 4.1347 -1.1463 -0.6296 43 1 3.2292 -2.6176 -1.0981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813297578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:06 Heat of formation + Delta-G solvation = -109.503640 kcal Electronic energy + Delta-G solvation = -27234.443266 eV Core-core repulsion = 23436.942017 eV Total energy + Delta-G solvation = -3797.501249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38069 -40.38573 -39.60124 -38.51244 -36.54617 -35.61185 -33.51457 -32.67109 -31.49993 -30.55971 -29.93846 -27.50915 -26.35924 -24.57467 -23.54562 -23.15857 -22.25258 -21.09899 -20.61304 -18.58644 -18.38583 -18.08163 -17.70807 -17.22805 -17.03452 -16.52209 -16.01494 -15.74008 -15.53096 -15.41254 -15.20971 -14.71106 -14.62291 -14.16360 -13.97481 -13.80972 -13.69369 -13.41284 -13.39778 -13.22853 -13.08681 -12.87342 -12.70149 -12.59266 -12.54000 -12.43989 -11.83583 -11.69824 -11.46414 -11.33572 -11.25555 -10.97332 -10.52720 -10.23485 -9.90135 -9.54265 -9.19814 -8.05875 -6.05885 0.77775 0.83481 0.98562 1.27794 1.32954 1.39211 2.02053 2.28230 2.40798 2.43563 2.97817 3.17632 3.25512 3.35378 3.70820 4.00880 4.16945 4.25731 4.33766 4.37382 4.41665 4.55614 4.59956 4.63519 4.66382 4.67786 4.76102 4.86347 4.93431 4.96784 5.00301 5.23700 5.24637 5.38660 5.51958 5.53505 5.67447 5.77542 5.81123 5.83969 5.96504 6.17856 6.41677 6.46443 6.55173 6.79617 7.01460 7.55720 7.70862 9.03458 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004664 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.973592 B = 6002.049724 C = 7153.187960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 N -0.715 5.715 4 C 0.494 3.506 5 O -0.514 6.514 6 C -0.113 4.113 7 C 0.082 3.918 8 H 0.027 0.973 9 C -0.478 4.478 10 H 0.037 0.963 11 C 0.026 3.974 12 N -0.913 5.913 13 Si 0.925 3.075 14 H -0.268 1.268 15 H -0.294 1.294 16 H -0.282 1.282 17 C -0.047 4.047 18 C -0.144 4.144 19 C -0.128 4.128 20 C -0.147 4.147 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.137 4.137 24 C 0.043 3.957 25 O -0.374 6.374 26 C 0.453 3.547 27 O -0.473 6.473 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.420 0.580 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 -4.014 -20.967 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 N -0.377 5.377 4 C 0.281 3.719 5 O -0.385 6.385 6 C -0.153 4.153 7 C 0.063 3.937 8 H 0.046 0.954 9 C -0.516 4.516 10 H 0.056 0.944 11 C -0.172 4.172 12 N -0.553 5.553 13 Si 0.753 3.247 14 H -0.193 1.193 15 H -0.220 1.220 16 H -0.208 1.208 17 C -0.047 4.047 18 C -0.162 4.162 19 C -0.145 4.145 20 C -0.165 4.165 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.174 4.174 24 C -0.030 4.030 25 O -0.291 6.291 26 C 0.291 3.709 27 O -0.354 6.354 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.116 0.884 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.892 -4.317 -19.463 20.788 hybrid contribution 0.115 -0.425 1.540 1.602 sum 6.008 -4.743 -17.923 19.489 Atomic orbital electron populations 1.22042 0.91746 1.03425 1.03671 1.21595 0.96886 0.83954 0.94299 1.45929 1.56127 1.09811 1.25788 1.21234 0.80714 0.88584 0.81378 1.90870 1.36425 1.76402 1.34822 1.21643 1.01953 0.91370 1.00291 1.17610 0.96868 0.87713 0.91557 0.95446 1.20898 1.01106 1.34436 0.95152 0.94443 1.25379 0.94955 0.95656 1.01230 1.70025 1.09861 1.49428 1.25965 0.86064 0.78365 0.78524 0.81712 1.19330 1.22005 1.20778 1.20556 0.93721 0.96744 0.93694 1.21107 0.98647 0.93786 1.02672 1.21290 0.97206 0.95409 1.00645 1.21271 0.92511 1.00025 1.02659 1.21370 1.00315 0.92361 1.00269 1.21030 0.95249 0.96732 1.01535 1.23377 0.99937 0.99364 0.94768 1.24632 0.98367 1.04568 0.75402 1.87024 1.67461 1.40244 1.34390 1.24306 0.76014 0.79409 0.91133 1.90872 1.55551 1.65424 1.23595 0.88290 0.90109 0.94485 0.74065 0.88468 0.88986 0.93942 0.88858 0.85014 0.83801 0.84092 0.86759 0.85179 0.84124 0.88382 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.39 71.98 0.60 -3.44 16 2 C 0.12 3.06 0.97 3.56 0.00 3.07 16 3 N -0.72 -19.23 5.14 -423.10 -2.18 -21.41 16 4 C 0.49 20.15 7.00 87.66 0.61 20.76 16 5 O -0.51 -27.80 10.81 18.72 0.20 -27.60 16 6 C -0.11 -4.34 4.92 29.85 0.15 -4.20 16 7 C 0.08 4.11 1.73 -12.29 -0.02 4.09 16 8 H 0.03 1.63 6.87 -2.39 -0.02 1.61 16 9 C -0.48 -27.79 6.45 25.60 0.17 -27.63 16 10 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 11 C 0.03 1.64 5.45 84.66 0.46 2.10 16 12 N -0.91 -58.96 12.81 21.45 0.27 -58.69 16 13 Si 0.93 50.50 29.54 68.60 2.03 52.53 16 14 H -0.27 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.29 -16.15 7.11 99.48 0.71 -15.44 16 16 H -0.28 -15.55 7.11 99.48 0.71 -14.85 16 17 C -0.05 -2.09 4.77 -19.87 -0.09 -2.19 16 18 C -0.14 -6.19 9.67 22.27 0.22 -5.98 16 19 C -0.13 -4.45 10.05 22.27 0.22 -4.23 16 20 C -0.15 -4.51 10.05 22.27 0.22 -4.29 16 21 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 22 C -0.13 -4.96 8.86 22.27 0.20 -4.76 16 23 C -0.14 -1.35 6.52 31.64 0.21 -1.15 16 24 C 0.04 0.53 7.90 72.52 0.57 1.10 16 25 O -0.37 -10.55 11.05 -50.23 -0.56 -11.11 16 26 C 0.45 16.56 7.27 71.44 0.52 17.08 16 27 O -0.47 -24.42 15.50 29.06 0.45 -23.97 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.44 6.28 -2.39 -0.02 1.42 16 31 H 0.42 6.94 8.19 -92.71 -0.76 6.18 16 32 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.09 3.19 7.66 -2.39 -0.02 3.18 16 34 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16 36 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.11 4.31 7.70 -2.91 -0.02 4.29 16 40 H 0.13 0.67 7.82 -2.39 -0.02 0.65 16 41 H 0.14 0.38 7.63 -2.39 -0.02 0.36 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -93.62 357.33 4.75 -88.87 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.27 Total: 14.84 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.26 Total: -13.47 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.90 Total: -80.09 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: 0.10 Total: -62.68 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.03 Total: 52.53 kcal Total: -93.62 4.75 -88.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813297578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.635 kcal (2) G-P(sol) polarization free energy of solvation -93.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds