Wall clock time and date at job start Tue Mar 31 2020 11:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.32272 * 2 1 4 4 C 1.34778 * 120.00380 * 299.21130 * 3 2 1 5 5 O 1.21289 * 119.99540 * 0.02562 * 4 3 2 6 6 C 1.50690 * 120.00446 * 180.28044 * 4 3 2 7 7 C 1.53002 * 109.47534 * 179.72634 * 6 4 3 8 8 H 1.08998 * 109.46635 * 304.99588 * 7 6 4 9 9 C 1.50695 * 109.47201 * 64.99501 * 7 6 4 10 10 H 1.07997 * 120.00606 * 234.68022 * 9 7 6 11 11 C 1.37882 * 119.99876 * 54.68064 * 9 7 6 12 12 N 1.31520 * 119.99835 * 4.83369 * 11 9 7 13 13 Si 1.86799 * 120.00276 * 184.82907 * 11 9 7 14 14 H 1.48500 * 109.46947 * 60.00141 * 13 11 9 15 15 H 1.48493 * 109.47410 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47079 * 300.00735 * 13 11 9 17 17 C 1.50695 * 109.47083 * 185.00007 * 7 6 4 18 18 C 1.38236 * 120.00162 * 151.50522 * 17 7 6 19 19 C 1.38231 * 120.00607 * 179.80660 * 18 17 7 20 20 C 1.38236 * 119.99551 * 0.41988 * 19 18 17 21 21 C 1.38241 * 120.00095 * 359.81186 * 20 19 18 22 22 C 1.38227 * 120.00037 * 359.97438 * 21 20 19 23 23 C 1.54488 * 110.46253 * 122.29982 * 2 1 3 24 24 C 1.54573 * 102.14298 * 134.22860 * 23 2 1 25 25 O 1.45827 * 104.44614 * 333.15521 * 24 23 2 26 26 C 1.34064 * 109.91053 * 30.59777 * 25 24 23 27 27 O 1.20825 * 125.09512 * 159.16289 * 26 25 24 28 28 H 1.09002 * 109.47474 * 59.30407 * 1 2 3 29 29 H 1.09002 * 109.46798 * 179.29925 * 1 2 3 30 30 H 1.08999 * 109.47362 * 299.30049 * 1 2 3 31 31 H 0.96995 * 119.99844 * 119.21753 * 3 2 1 32 32 H 1.09005 * 109.46955 * 299.72825 * 6 4 3 33 33 H 1.08999 * 109.47284 * 59.71991 * 6 4 3 34 34 H 0.97001 * 119.99988 * 179.97438 * 12 11 9 35 35 H 1.08006 * 119.99536 * 359.97438 * 18 17 7 36 36 H 1.07990 * 120.00517 * 180.21040 * 19 18 17 37 37 H 1.08000 * 120.00372 * 179.79059 * 20 19 18 38 38 H 1.08001 * 119.99785 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00343 * 179.97438 * 22 21 20 40 40 H 1.08995 * 110.87053 * 252.39275 * 23 2 1 41 41 H 1.09002 * 110.86659 * 16.06824 * 23 2 1 42 42 H 1.08998 * 110.43916 * 214.41054 * 24 23 2 43 43 H 1.09001 * 110.54530 * 91.94551 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0388 1.3738 0.0000 4 6 1.7387 2.2037 -1.0187 5 8 1.0470 1.8131 -1.9353 6 6 2.2673 3.6148 -1.0219 7 6 1.7888 4.3360 -2.2836 8 1 2.0795 3.7611 -3.1629 9 6 0.2885 4.4722 -2.2459 10 1 -0.3081 4.1033 -3.0670 11 6 -0.3226 5.0681 -1.1630 12 7 0.4070 5.6023 -0.2080 13 14 -2.1867 5.1167 -1.0524 14 1 -2.7185 3.7302 -1.0463 15 1 -2.5905 5.8077 0.1984 16 1 -2.7330 5.8512 -2.2217 17 6 2.4162 5.7046 -2.3484 18 6 2.6415 6.3044 -3.5733 19 6 3.2133 7.5615 -3.6327 20 6 3.5677 8.2153 -2.4674 21 6 3.3468 7.6135 -1.2426 22 6 2.7710 6.3583 -1.1831 23 6 2.0701 -0.7734 1.2234 24 6 3.1713 -1.6546 0.5908 25 8 2.7449 -1.8326 -0.7923 26 6 2.0566 -0.7568 -1.2000 27 8 1.8831 -0.4390 -2.3527 28 1 -0.3634 0.5246 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8962 31 1 2.5918 1.6862 0.7331 32 1 1.9009 4.1420 -0.1410 33 1 3.3570 3.5947 -1.0060 34 1 -0.0229 6.0218 0.5537 35 1 2.3683 5.7919 -4.4839 36 1 3.3862 8.0315 -4.5894 37 1 4.0176 9.1960 -2.5138 38 1 3.6241 8.1241 -0.3322 39 1 2.5988 5.8879 -0.2263 40 1 2.4945 -0.0897 1.9586 41 1 1.2888 -1.3889 1.6695 42 1 3.2271 -2.6173 1.0989 43 1 4.1358 -1.1481 0.6296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813297579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:11 Heat of formation + Delta-G solvation = -80.227011 kcal Electronic energy + Delta-G solvation = -27467.601767 eV Core-core repulsion = 23671.370048 eV Total energy + Delta-G solvation = -3796.231719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.23955 -38.82786 -37.97179 -37.17786 -35.22940 -34.05600 -31.60981 -30.99533 -29.81800 -29.48100 -28.21300 -25.90671 -25.20343 -22.80768 -22.59012 -21.51299 -20.74897 -19.66379 -19.11157 -17.28445 -16.92064 -16.49375 -16.07257 -15.88407 -15.42481 -14.92865 -14.60763 -14.39004 -14.08984 -13.83079 -13.70587 -13.48234 -12.93081 -12.84747 -12.50052 -12.30407 -12.21081 -12.09177 -11.96462 -11.60957 -11.45976 -11.44711 -11.33450 -10.89284 -10.79719 -10.62125 -10.41991 -10.14919 -10.04972 -9.92893 -9.28360 -9.15078 -8.69807 -8.54029 -8.35019 -7.78927 -7.42475 -5.96624 -4.05801 2.20734 2.51433 2.59989 3.26273 3.32926 3.35358 3.42752 3.61788 3.69120 4.04664 4.10952 4.42534 4.44161 4.67907 4.99147 5.14215 5.21046 5.25843 5.36484 5.51738 5.66588 5.82924 5.88015 5.91092 5.98584 6.04841 6.36292 6.46481 6.51360 6.58686 6.69242 6.72893 6.79668 6.93065 7.15566 7.17454 7.27558 7.48764 7.55806 7.70056 7.75058 7.94672 8.06465 8.17308 8.19559 8.36965 8.91245 9.21266 9.57054 10.97364 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014512 B = 0.004610 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.940998 B = 6072.257488 C = 7014.223825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 N -0.736 5.736 4 C 0.514 3.486 5 O -0.488 6.488 6 C -0.134 4.134 7 C 0.088 3.912 8 H 0.038 0.962 9 C -0.467 4.467 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.279 1.279 17 C -0.026 4.026 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.069 4.069 23 C -0.160 4.160 24 C 0.055 3.945 25 O -0.355 6.355 26 C 0.466 3.534 27 O -0.404 6.404 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.132 0.868 33 H 0.051 0.949 34 H 0.260 0.740 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -8.653 8.383 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 N -0.396 5.396 4 C 0.302 3.698 5 O -0.358 6.358 6 C -0.174 4.174 7 C 0.069 3.931 8 H 0.057 0.943 9 C -0.505 4.505 10 H 0.077 0.923 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.718 3.282 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.027 4.027 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.173 4.173 21 C -0.162 4.162 22 C -0.087 4.087 23 C -0.198 4.198 24 C -0.020 4.020 25 O -0.272 6.272 26 C 0.301 3.699 27 O -0.281 6.281 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.150 0.850 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.382 -8.862 7.110 13.031 hybrid contribution -0.952 0.490 0.755 1.311 sum 5.429 -8.372 7.865 12.706 Atomic orbital electron populations 1.22087 0.91291 1.02392 1.05449 1.21358 0.97169 0.84918 0.93020 1.46299 1.56646 1.09615 1.27026 1.21309 0.80287 0.87555 0.80607 1.90705 1.35018 1.75607 1.34453 1.21912 0.97643 0.90686 1.07194 1.17631 0.95170 0.87851 0.92493 0.94344 1.20951 0.90089 1.35408 1.04027 0.92309 1.24871 0.97940 0.95030 0.96071 1.69670 1.34202 1.38452 1.10754 0.86667 0.86228 0.78103 0.77173 1.20359 1.21489 1.20421 1.20336 0.91594 0.98845 0.91921 1.20909 1.00857 0.95469 0.97731 1.20798 1.02216 0.95865 0.97082 1.20763 1.03978 0.99256 0.93268 1.21039 1.01926 0.96881 0.96340 1.21344 0.93833 0.93888 0.99637 1.23271 0.99576 0.99600 0.97316 1.24052 0.97723 1.01885 0.78311 1.87050 1.68074 1.41339 1.30766 1.23480 0.76557 0.78931 0.90931 1.90825 1.53289 1.63572 1.20406 0.88756 0.92106 0.91130 0.76740 0.85027 0.93073 0.92970 0.87657 0.88105 0.88324 0.88121 0.84315 0.87934 0.88069 0.87251 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.39 37.16 0.31 -2.00 16 2 C 0.12 1.74 0.97 -131.88 -0.13 1.61 16 3 N -0.74 -11.35 5.14 -47.67 -0.25 -11.60 16 4 C 0.51 10.67 7.00 -10.99 -0.08 10.60 16 5 O -0.49 -12.06 10.81 -17.21 -0.19 -12.25 16 6 C -0.13 -2.82 4.07 -27.89 -0.11 -2.94 16 7 C 0.09 2.12 1.97 -92.93 -0.18 1.94 16 8 H 0.04 0.97 7.91 -51.93 -0.41 0.56 16 9 C -0.47 -12.52 7.27 -34.44 -0.25 -12.77 16 10 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 11 C 0.06 1.57 5.12 -17.82 -0.09 1.48 16 12 N -0.89 -22.30 7.99 55.43 0.44 -21.86 16 13 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 18 C -0.13 -2.85 9.71 -39.58 -0.38 -3.24 16 19 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 20 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 21 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 22 C -0.07 -1.49 7.45 -39.58 -0.30 -1.79 16 23 C -0.16 -1.29 6.51 -25.12 -0.16 -1.46 16 24 C 0.05 0.44 7.90 37.98 0.30 0.74 16 25 O -0.35 -4.92 11.05 -38.47 -0.43 -5.34 16 26 C 0.47 7.97 7.27 36.31 0.26 8.24 16 27 O -0.40 -8.94 15.50 -26.17 -0.41 -9.35 16 28 H 0.09 1.86 6.28 -51.93 -0.33 1.53 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.40 4.72 8.19 -40.82 -0.33 4.38 16 32 H 0.13 2.89 4.70 -51.93 -0.24 2.64 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 35 H 0.11 2.20 8.06 -52.48 -0.42 1.77 16 36 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.14 3.05 5.18 -52.49 -0.27 2.78 16 40 H 0.10 0.60 7.63 -51.93 -0.40 0.21 16 41 H 0.10 0.65 7.82 -51.93 -0.41 0.25 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -32.70 346.62 -8.85 -41.56 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.74 Total: 7.69 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.49 Total: -10.41 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.20 Total: -33.45 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.02 Total: -26.94 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.70 -8.85 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813297579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.671 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds