Wall clock time and date at job start Tue Mar 31 2020 11:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.32272 * 2 1 4 4 C 1.34778 * 120.00380 * 299.21130 * 3 2 1 5 5 O 1.21289 * 119.99540 * 0.02562 * 4 3 2 6 6 C 1.50690 * 120.00446 * 180.28044 * 4 3 2 7 7 C 1.53002 * 109.47534 * 179.72634 * 6 4 3 8 8 H 1.08998 * 109.46635 * 304.99588 * 7 6 4 9 9 C 1.50695 * 109.47201 * 64.99501 * 7 6 4 10 10 H 1.07997 * 120.00606 * 234.68022 * 9 7 6 11 11 C 1.37882 * 119.99876 * 54.68064 * 9 7 6 12 12 N 1.31520 * 119.99835 * 4.83369 * 11 9 7 13 13 Si 1.86799 * 120.00276 * 184.82907 * 11 9 7 14 14 H 1.48500 * 109.46947 * 60.00141 * 13 11 9 15 15 H 1.48493 * 109.47410 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47079 * 300.00735 * 13 11 9 17 17 C 1.50695 * 109.47083 * 185.00007 * 7 6 4 18 18 C 1.38236 * 120.00162 * 151.50522 * 17 7 6 19 19 C 1.38231 * 120.00607 * 179.80660 * 18 17 7 20 20 C 1.38236 * 119.99551 * 0.41988 * 19 18 17 21 21 C 1.38241 * 120.00095 * 359.81186 * 20 19 18 22 22 C 1.38227 * 120.00037 * 359.97438 * 21 20 19 23 23 C 1.54488 * 110.46253 * 122.29982 * 2 1 3 24 24 C 1.54573 * 102.14298 * 134.22860 * 23 2 1 25 25 O 1.45827 * 104.44614 * 333.15521 * 24 23 2 26 26 C 1.34064 * 109.91053 * 30.59777 * 25 24 23 27 27 O 1.20825 * 125.09512 * 159.16289 * 26 25 24 28 28 H 1.09002 * 109.47474 * 59.30407 * 1 2 3 29 29 H 1.09002 * 109.46798 * 179.29925 * 1 2 3 30 30 H 1.08999 * 109.47362 * 299.30049 * 1 2 3 31 31 H 0.96995 * 119.99844 * 119.21753 * 3 2 1 32 32 H 1.09005 * 109.46955 * 299.72825 * 6 4 3 33 33 H 1.08999 * 109.47284 * 59.71991 * 6 4 3 34 34 H 0.97001 * 119.99988 * 179.97438 * 12 11 9 35 35 H 1.08006 * 119.99536 * 359.97438 * 18 17 7 36 36 H 1.07990 * 120.00517 * 180.21040 * 19 18 17 37 37 H 1.08000 * 120.00372 * 179.79059 * 20 19 18 38 38 H 1.08001 * 119.99785 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00343 * 179.97438 * 22 21 20 40 40 H 1.08995 * 110.87053 * 252.39275 * 23 2 1 41 41 H 1.09002 * 110.86659 * 16.06824 * 23 2 1 42 42 H 1.08998 * 110.43916 * 214.41054 * 24 23 2 43 43 H 1.09001 * 110.54530 * 91.94551 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0388 1.3738 0.0000 4 6 1.7387 2.2037 -1.0187 5 8 1.0470 1.8131 -1.9353 6 6 2.2673 3.6148 -1.0219 7 6 1.7888 4.3360 -2.2836 8 1 2.0795 3.7611 -3.1629 9 6 0.2885 4.4722 -2.2459 10 1 -0.3081 4.1033 -3.0670 11 6 -0.3226 5.0681 -1.1630 12 7 0.4070 5.6023 -0.2080 13 14 -2.1867 5.1167 -1.0524 14 1 -2.7185 3.7302 -1.0463 15 1 -2.5905 5.8077 0.1984 16 1 -2.7330 5.8512 -2.2217 17 6 2.4162 5.7046 -2.3484 18 6 2.6415 6.3044 -3.5733 19 6 3.2133 7.5615 -3.6327 20 6 3.5677 8.2153 -2.4674 21 6 3.3468 7.6135 -1.2426 22 6 2.7710 6.3583 -1.1831 23 6 2.0701 -0.7734 1.2234 24 6 3.1713 -1.6546 0.5908 25 8 2.7449 -1.8326 -0.7923 26 6 2.0566 -0.7568 -1.2000 27 8 1.8831 -0.4390 -2.3527 28 1 -0.3634 0.5246 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8962 31 1 2.5918 1.6862 0.7331 32 1 1.9009 4.1420 -0.1410 33 1 3.3570 3.5947 -1.0060 34 1 -0.0229 6.0218 0.5537 35 1 2.3683 5.7919 -4.4839 36 1 3.3862 8.0315 -4.5894 37 1 4.0176 9.1960 -2.5138 38 1 3.6241 8.1241 -0.3322 39 1 2.5988 5.8879 -0.2263 40 1 2.4945 -0.0897 1.9586 41 1 1.2888 -1.3889 1.6695 42 1 3.2271 -2.6173 1.0989 43 1 4.1358 -1.1481 0.6296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813297579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:10 Heat of formation + Delta-G solvation = -100.230398 kcal Electronic energy + Delta-G solvation = -27468.469179 eV Core-core repulsion = 23671.370048 eV Total energy + Delta-G solvation = -3797.099131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39800 -40.41145 -39.52888 -38.52520 -36.61311 -35.79793 -33.11241 -32.63248 -31.40326 -30.50596 -29.79251 -27.70777 -26.39073 -24.48941 -23.55580 -23.09654 -22.18382 -21.14614 -20.60942 -18.55833 -18.32996 -17.95077 -17.65774 -17.19618 -16.91100 -16.83361 -15.87563 -15.75935 -15.47172 -15.29122 -15.23220 -14.76202 -14.56502 -14.39629 -13.80148 -13.63587 -13.53867 -13.39940 -13.31624 -13.13774 -13.09142 -12.84755 -12.71199 -12.67620 -12.57106 -12.19597 -11.87270 -11.68640 -11.47729 -11.35090 -11.06674 -11.03973 -10.54124 -10.17878 -9.89965 -9.40280 -9.11908 -7.93845 -6.08945 0.88514 0.93900 1.00103 1.36422 1.37159 1.46487 2.03887 2.24548 2.44042 2.46396 2.96080 3.19770 3.24380 3.37546 3.68900 3.98839 4.21073 4.31945 4.37523 4.42544 4.51457 4.58177 4.60232 4.67402 4.69491 4.79731 4.86699 4.89787 4.95457 5.08523 5.14704 5.21758 5.38661 5.51655 5.53662 5.64244 5.67730 5.78321 5.90828 5.94730 6.09517 6.37078 6.42705 6.49136 6.58473 6.77141 6.85016 7.52415 7.68722 8.95625 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014512 B = 0.004610 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.940998 B = 6072.257488 C = 7014.223825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.119 3.881 3 N -0.717 5.717 4 C 0.508 3.492 5 O -0.535 6.535 6 C -0.124 4.124 7 C 0.089 3.911 8 H 0.004 0.996 9 C -0.491 4.491 10 H 0.020 0.980 11 C 0.040 3.960 12 N -0.882 5.882 13 Si 0.927 3.073 14 H -0.290 1.290 15 H -0.271 1.271 16 H -0.288 1.288 17 C -0.051 4.051 18 C -0.155 4.155 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.079 4.079 23 C -0.141 4.141 24 C 0.046 3.954 25 O -0.367 6.367 26 C 0.463 3.537 27 O -0.473 6.473 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.418 0.582 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 -8.062 11.965 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 N -0.377 5.377 4 C 0.296 3.704 5 O -0.409 6.409 6 C -0.164 4.164 7 C 0.070 3.930 8 H 0.022 0.978 9 C -0.529 4.529 10 H 0.039 0.961 11 C -0.160 4.160 12 N -0.520 5.520 13 Si 0.755 3.245 14 H -0.216 1.216 15 H -0.195 1.195 16 H -0.214 1.214 17 C -0.051 4.051 18 C -0.174 4.174 19 C -0.159 4.159 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.097 4.097 23 C -0.178 4.178 24 C -0.026 4.026 25 O -0.284 6.284 26 C 0.301 3.699 27 O -0.355 6.355 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.257 0.743 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.096 -8.283 10.791 15.830 hybrid contribution -1.396 0.262 -0.357 1.464 sum 6.700 -8.021 10.434 14.768 Atomic orbital electron populations 1.22041 0.92284 1.03299 1.03414 1.21603 0.96560 0.84034 0.94821 1.45958 1.55868 1.09897 1.26015 1.21310 0.79825 0.88076 0.81193 1.90710 1.37099 1.76514 1.36581 1.21731 0.98721 0.90850 1.05102 1.17496 0.93947 0.88946 0.92634 0.97777 1.20837 0.91525 1.36766 1.03759 0.96146 1.25144 1.00007 0.94896 0.95905 1.69727 1.34365 1.37621 1.10334 0.86121 0.83730 0.77286 0.77370 1.21610 1.19509 1.21398 1.20301 0.93256 0.98379 0.93197 1.21064 1.02164 0.96942 0.97188 1.21137 1.00905 0.94748 0.99063 1.21207 1.02544 1.00474 0.92392 1.21386 1.00792 0.95986 0.98111 1.21323 0.94703 0.94978 0.98699 1.23378 1.00130 0.99435 0.94898 1.24627 0.98178 1.04500 0.75332 1.87017 1.67213 1.39941 1.34265 1.24057 0.75779 0.79263 0.90827 1.90789 1.55785 1.65702 1.23251 0.94347 0.89714 0.89506 0.74323 0.85350 0.91009 0.92640 0.88545 0.85210 0.84513 0.85211 0.84786 0.84594 0.85356 0.83169 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 8.39 71.98 0.60 -3.97 16 2 C 0.12 3.19 0.97 3.56 0.00 3.19 16 3 N -0.72 -21.70 5.14 -423.10 -2.18 -23.87 16 4 C 0.51 22.00 7.00 87.65 0.61 22.62 16 5 O -0.54 -28.66 10.81 18.70 0.20 -28.46 16 6 C -0.12 -5.38 4.07 29.85 0.12 -5.26 16 7 C 0.09 4.57 1.97 -12.29 -0.02 4.55 16 8 H 0.00 0.21 7.91 -2.39 -0.02 0.19 16 9 C -0.49 -28.02 7.27 25.60 0.19 -27.83 16 10 H 0.02 1.27 7.82 -2.91 -0.02 1.25 16 11 C 0.04 2.14 5.12 84.66 0.43 2.58 16 12 N -0.88 -43.97 7.99 21.45 0.17 -43.80 16 13 Si 0.93 44.63 29.54 68.60 2.03 46.65 16 14 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 17 C -0.05 -2.40 4.69 -19.87 -0.09 -2.49 16 18 C -0.16 -6.90 9.71 22.27 0.22 -6.69 16 19 C -0.14 -5.24 10.05 22.27 0.22 -5.02 16 20 C -0.15 -5.11 10.05 22.27 0.22 -4.88 16 21 C -0.14 -5.33 10.05 22.27 0.22 -5.10 16 22 C -0.08 -3.37 7.45 22.27 0.17 -3.20 16 23 C -0.14 -1.65 6.51 31.64 0.21 -1.44 16 24 C 0.05 0.55 7.90 72.52 0.57 1.13 16 25 O -0.37 -9.73 11.05 -50.16 -0.55 -10.28 16 26 C 0.46 16.17 7.27 71.44 0.52 16.69 16 27 O -0.47 -22.57 15.50 29.07 0.45 -22.12 16 28 H 0.04 1.60 6.28 -2.39 -0.01 1.59 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.42 8.92 8.19 -92.71 -0.76 8.16 16 32 H 0.13 5.67 4.70 -2.38 -0.01 5.65 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.26 12.64 8.31 -92.71 -0.77 11.87 16 35 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.13 4.01 8.06 -2.92 -0.02 3.99 16 37 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.13 5.79 5.18 -2.91 -0.02 5.77 16 40 H 0.14 0.78 7.63 -2.39 -0.02 0.76 16 41 H 0.13 0.93 7.82 -2.39 -0.02 0.91 16 42 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -79.73 346.62 4.60 -75.13 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.28 Total: 21.89 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.20 Total: -15.14 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.00 Total: -67.67 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: 0.10 Total: -60.86 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -79.73 4.60 -75.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813297579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.099 kcal (2) G-P(sol) polarization free energy of solvation -79.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds