Wall clock time and date at job start Tue Mar 31 2020 11:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.36863 * 125.02424 * 2 1 4 4 H 0.97001 * 125.00355 * 0.05811 * 3 2 1 5 5 C 1.37382 * 109.99053 * 180.02562 * 3 2 1 6 6 C 1.39384 * 133.23786 * 180.27528 * 5 3 2 7 7 C 1.36296 * 120.24167 * 180.20308 * 6 5 3 8 8 C 1.40266 * 120.66178 * 359.48481 * 7 6 5 9 9 C 1.47520 * 119.97664 * 180.27740 * 8 7 6 10 10 O 1.21504 * 119.99963 * 180.02562 * 9 8 7 11 11 O 1.34736 * 120.00345 * 0.02562 * 9 8 7 12 12 C 1.45197 * 117.00077 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47204 * 179.97438 * 12 11 9 14 14 O 1.42899 * 109.46801 * 65.00350 * 13 12 11 15 15 C 1.42896 * 114.00021 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47527 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99722 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00368 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00418 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99968 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47500 * 90.00021 * 20 18 16 22 22 H 1.48497 * 109.47361 * 210.00109 * 20 18 16 23 23 H 1.48504 * 109.47181 * 330.00257 * 20 18 16 24 24 C 1.39215 * 120.04199 * 0.26112 * 8 7 6 25 25 C 1.39247 * 119.38852 * 359.97438 * 24 8 7 26 26 C 1.34193 * 125.02022 * 180.02562 * 2 1 3 27 27 C 1.50698 * 126.54033 * 359.94937 * 26 2 1 28 28 H 1.08999 * 109.47161 * 269.96291 * 1 2 3 29 29 H 1.09008 * 109.47166 * 29.95826 * 1 2 3 30 30 H 1.08999 * 109.47643 * 149.95783 * 1 2 3 31 31 H 1.08003 * 119.88154 * 359.96552 * 6 5 3 32 32 H 1.08002 * 119.67239 * 179.77192 * 7 6 5 33 33 H 1.08998 * 109.47213 * 300.00275 * 12 11 9 34 34 H 1.08997 * 109.47263 * 60.00274 * 12 11 9 35 35 H 1.09000 * 109.46756 * 185.00188 * 13 12 11 36 36 H 1.08996 * 109.46791 * 305.00387 * 13 12 11 37 37 H 1.08999 * 109.47074 * 299.99823 * 15 14 13 38 38 H 1.09003 * 109.47059 * 59.99333 * 15 14 13 39 39 H 0.97000 * 120.00436 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.30306 * 179.97438 * 24 8 7 41 41 H 1.08995 * 109.47131 * 270.02194 * 27 26 2 42 42 H 1.08994 * 109.47514 * 30.02135 * 27 26 2 43 43 H 1.09000 * 109.47204 * 150.01891 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0008 5 6 3.6192 0.7644 -0.0006 6 6 4.8047 1.4974 0.0041 7 6 6.0078 0.8570 -0.0022 8 6 6.0723 -0.5442 -0.0025 9 6 7.3826 -1.2218 -0.0031 10 8 7.4389 -2.4355 -0.0038 11 8 8.5170 -0.4948 -0.0029 12 6 9.7701 -1.2284 -0.0029 13 6 10.9390 -0.2412 -0.0033 14 8 10.9357 0.5013 1.2177 15 6 11.9929 1.4572 1.3195 16 6 11.8927 2.1787 2.6387 17 1 11.1005 1.9320 3.3302 18 6 12.8116 3.1542 2.9626 19 7 12.7238 3.7841 4.1138 20 14 14.1813 3.5812 1.7664 21 1 13.7250 4.6629 0.8570 22 1 15.3737 4.0407 2.5228 23 1 14.5341 2.3796 0.9684 24 6 4.9004 -1.2958 -0.0019 25 6 3.6702 -0.6435 -0.0004 26 6 2.2770 -1.0990 -0.0005 27 6 1.8003 -2.5286 -0.0001 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 4.7699 2.5769 0.0087 32 1 6.9207 1.4341 -0.0023 33 1 9.8240 -1.8556 0.8869 34 1 9.8241 -1.8552 -0.8931 35 1 11.8771 -0.7890 -0.0929 36 1 10.8361 0.4434 -0.8451 37 1 12.9531 0.9451 1.2571 38 1 11.9115 2.1771 0.5050 39 1 13.3705 4.4702 4.3418 40 1 4.9451 -2.3748 -0.0025 41 1 1.6858 -2.8731 1.0277 42 1 0.8410 -2.5919 -0.5135 43 1 2.5295 -3.1549 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815169522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:29 Heat of formation + Delta-G solvation = -84.687600 kcal Electronic energy + Delta-G solvation = -24991.408402 eV Core-core repulsion = 21194.983257 eV Total energy + Delta-G solvation = -3796.425145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68840 -40.13472 -37.46039 -36.87885 -35.94091 -33.55401 -32.68545 -31.55290 -30.58230 -30.10183 -28.36918 -27.51663 -26.18190 -24.15043 -22.23806 -21.84209 -21.76571 -20.79699 -19.44509 -17.99019 -17.65185 -17.03357 -16.61923 -16.38533 -15.72072 -15.39574 -15.23219 -14.95692 -14.60375 -14.38426 -14.10809 -13.63656 -13.51446 -13.38639 -13.14503 -12.99846 -12.94346 -12.87463 -12.51249 -12.42067 -12.37934 -11.90107 -11.68391 -11.52966 -11.13901 -11.00438 -10.86173 -10.64741 -10.40227 -10.31611 -9.86436 -9.79878 -9.19190 -8.88962 -8.49382 -8.43015 -7.86191 -6.11202 -4.10370 0.71216 1.06619 2.33991 2.67015 2.73709 2.84932 3.24617 3.31633 3.32645 3.78647 4.28996 4.35239 4.48554 4.51917 4.71381 4.76583 4.83666 4.89614 5.03787 5.10453 5.19772 5.20532 5.22112 5.37910 5.44090 5.48121 5.49183 5.51079 5.58886 5.74265 5.79038 5.83614 5.93914 5.99831 6.21775 6.30984 6.42015 6.51264 6.57228 6.64129 6.84503 6.98111 7.20245 7.58512 7.93594 7.99125 8.64871 9.00697 9.47606 11.01794 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002376 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.183549 B =11782.684971 C =12802.198354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.067 3.933 3 N -0.588 5.588 4 H 0.416 0.584 5 C 0.129 3.871 6 C -0.142 4.142 7 C -0.040 4.040 8 C -0.151 4.151 9 C 0.513 3.487 10 O -0.520 6.520 11 O -0.337 6.337 12 C 0.075 3.925 13 C 0.058 3.942 14 O -0.375 6.375 15 C 0.168 3.832 16 C -0.518 4.518 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.876 3.124 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.266 1.266 24 C 0.004 3.996 25 C -0.122 4.122 26 C -0.159 4.159 27 C -0.079 4.079 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.004 0.996 38 H 0.000 1.000 39 H 0.266 0.734 40 H 0.137 0.863 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.427 -8.198 -12.663 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 N -0.191 5.191 4 H 0.253 0.747 5 C 0.020 3.980 6 C -0.163 4.163 7 C -0.060 4.060 8 C -0.153 4.153 9 C 0.359 3.641 10 O -0.411 6.411 11 O -0.253 6.253 12 C 0.002 3.998 13 C -0.020 4.020 14 O -0.294 6.294 15 C 0.093 3.907 16 C -0.556 4.556 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.015 4.015 25 C -0.127 4.127 26 C -0.165 4.165 27 C -0.137 4.137 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.018 0.982 39 H 0.076 0.924 40 H 0.155 0.845 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.498 -8.328 -12.394 28.690 hybrid contribution 1.041 0.857 -0.697 1.518 sum -23.457 -7.472 -13.091 27.883 Atomic orbital electron populations 1.20460 0.87610 1.03656 1.03189 1.20070 0.93322 0.85367 1.05156 1.41662 1.04005 1.08359 1.65106 0.74695 1.18433 0.84647 0.94059 1.00825 1.19743 0.89151 0.99657 1.07726 1.20926 0.98114 0.93016 0.93903 1.18800 0.89873 0.93789 1.12876 1.21033 0.85092 0.85512 0.72474 1.90799 1.88260 1.14946 1.47098 1.86628 1.14553 1.40712 1.83412 1.23169 0.79754 0.94141 1.02772 1.22406 0.94939 0.94390 0.90267 1.87985 1.53044 1.53479 1.34888 1.20630 0.85367 0.86848 0.97871 1.20884 1.14725 1.18875 1.01144 0.89910 1.24773 0.97406 0.95495 0.95350 1.69877 1.36685 1.25019 1.21762 0.86845 0.82105 0.79283 0.81459 1.19917 1.20790 1.19105 1.20597 0.88827 1.00059 0.91982 1.18900 0.92927 0.91906 1.08953 1.20049 0.90144 0.94972 1.11355 1.20150 1.00767 0.90828 1.01915 0.90406 0.91387 0.89649 0.85300 0.83537 0.90287 0.90275 0.91818 0.93035 0.97854 0.98185 0.92365 0.84498 0.91604 0.91815 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.18 36.00 0.37 -0.03 16 2 C 0.07 0.54 7.08 -81.78 -0.58 -0.04 16 3 N -0.59 -4.87 6.05 -6.91 -0.04 -4.91 16 4 H 0.42 2.19 8.96 -40.82 -0.37 1.82 16 5 C 0.13 1.44 7.27 -83.95 -0.61 0.83 16 6 C -0.14 -1.59 10.00 -39.85 -0.40 -1.99 16 7 C -0.04 -0.53 9.53 -39.52 -0.38 -0.90 16 8 C -0.15 -2.18 5.87 -104.99 -0.62 -2.79 16 9 C 0.51 8.47 7.89 34.51 0.27 8.74 16 10 O -0.52 -9.31 16.12 -19.27 -0.31 -9.62 16 11 O -0.34 -5.83 9.42 -43.37 -0.41 -6.24 16 12 C 0.08 1.20 5.85 37.16 0.22 1.42 16 13 C 0.06 1.01 6.33 37.16 0.24 1.24 16 14 O -0.37 -8.84 10.30 -38.80 -0.40 -9.24 16 15 C 0.17 4.27 4.76 36.00 0.17 4.45 16 16 C -0.52 -15.52 9.99 -34.44 -0.34 -15.87 16 17 H 0.08 2.72 8.06 -52.48 -0.42 2.30 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.89 -27.71 13.96 55.43 0.77 -26.93 16 20 Si 0.88 21.35 27.47 -169.99 -4.67 16.69 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 24 C 0.00 0.05 9.65 -38.84 -0.37 -0.32 16 25 C -0.12 -1.48 6.34 -105.16 -0.67 -2.14 16 26 C -0.16 -1.55 6.32 -102.69 -0.65 -2.20 16 27 C -0.08 -0.58 10.17 36.00 0.37 -0.21 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.08 0.29 7.04 -51.93 -0.37 -0.07 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.15 1.93 7.58 -52.49 -0.40 1.54 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 38 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.14 1.70 7.64 -52.49 -0.40 1.30 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.34 7.06 -51.93 -0.37 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -35.71 369.36 -8.63 -44.34 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.06 Total: -1.84 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -3.08 Total: -7.81 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.73 Total: -31.84 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -1.12 Total: -25.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.71 -8.63 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815169522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.346 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds