Wall clock time and date at job start Tue Mar 31 2020 11:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.36863 * 125.02424 * 2 1 4 4 H 0.97001 * 125.00355 * 0.05811 * 3 2 1 5 5 C 1.37382 * 109.99053 * 180.02562 * 3 2 1 6 6 C 1.39384 * 133.23786 * 180.27528 * 5 3 2 7 7 C 1.36296 * 120.24167 * 180.20308 * 6 5 3 8 8 C 1.40266 * 120.66178 * 359.48481 * 7 6 5 9 9 C 1.47520 * 119.97664 * 180.27740 * 8 7 6 10 10 O 1.21504 * 119.99963 * 180.02562 * 9 8 7 11 11 O 1.34736 * 120.00345 * 0.02562 * 9 8 7 12 12 C 1.45197 * 117.00077 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47204 * 179.97438 * 12 11 9 14 14 O 1.42899 * 109.46801 * 65.00350 * 13 12 11 15 15 C 1.42896 * 114.00021 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47527 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99722 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00368 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00418 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99968 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47500 * 90.00021 * 20 18 16 22 22 H 1.48497 * 109.47361 * 210.00109 * 20 18 16 23 23 H 1.48504 * 109.47181 * 330.00257 * 20 18 16 24 24 C 1.39215 * 120.04199 * 0.26112 * 8 7 6 25 25 C 1.39247 * 119.38852 * 359.97438 * 24 8 7 26 26 C 1.34193 * 125.02022 * 180.02562 * 2 1 3 27 27 C 1.50698 * 126.54033 * 359.94937 * 26 2 1 28 28 H 1.08999 * 109.47161 * 269.96291 * 1 2 3 29 29 H 1.09008 * 109.47166 * 29.95826 * 1 2 3 30 30 H 1.08999 * 109.47643 * 149.95783 * 1 2 3 31 31 H 1.08003 * 119.88154 * 359.96552 * 6 5 3 32 32 H 1.08002 * 119.67239 * 179.77192 * 7 6 5 33 33 H 1.08998 * 109.47213 * 300.00275 * 12 11 9 34 34 H 1.08997 * 109.47263 * 60.00274 * 12 11 9 35 35 H 1.09000 * 109.46756 * 185.00188 * 13 12 11 36 36 H 1.08996 * 109.46791 * 305.00387 * 13 12 11 37 37 H 1.08999 * 109.47074 * 299.99823 * 15 14 13 38 38 H 1.09003 * 109.47059 * 59.99333 * 15 14 13 39 39 H 0.97000 * 120.00436 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.30306 * 179.97438 * 24 8 7 41 41 H 1.08995 * 109.47131 * 270.02194 * 27 26 2 42 42 H 1.08994 * 109.47514 * 30.02135 * 27 26 2 43 43 H 1.09000 * 109.47204 * 150.01891 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0008 5 6 3.6192 0.7644 -0.0006 6 6 4.8047 1.4974 0.0041 7 6 6.0078 0.8570 -0.0022 8 6 6.0723 -0.5442 -0.0025 9 6 7.3826 -1.2218 -0.0031 10 8 7.4389 -2.4355 -0.0038 11 8 8.5170 -0.4948 -0.0029 12 6 9.7701 -1.2284 -0.0029 13 6 10.9390 -0.2412 -0.0033 14 8 10.9357 0.5013 1.2177 15 6 11.9929 1.4572 1.3195 16 6 11.8927 2.1787 2.6387 17 1 11.1005 1.9320 3.3302 18 6 12.8116 3.1542 2.9626 19 7 12.7238 3.7841 4.1138 20 14 14.1813 3.5812 1.7664 21 1 13.7250 4.6629 0.8570 22 1 15.3737 4.0407 2.5228 23 1 14.5341 2.3796 0.9684 24 6 4.9004 -1.2958 -0.0019 25 6 3.6702 -0.6435 -0.0004 26 6 2.2770 -1.0990 -0.0005 27 6 1.8003 -2.5286 -0.0001 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 4.7699 2.5769 0.0087 32 1 6.9207 1.4341 -0.0023 33 1 9.8240 -1.8556 0.8869 34 1 9.8241 -1.8552 -0.8931 35 1 11.8771 -0.7890 -0.0929 36 1 10.8361 0.4434 -0.8451 37 1 12.9531 0.9451 1.2571 38 1 11.9115 2.1771 0.5050 39 1 13.3705 4.4702 4.3418 40 1 4.9451 -2.3748 -0.0025 41 1 1.6858 -2.8731 1.0277 42 1 0.8410 -2.5919 -0.5135 43 1 2.5295 -3.1549 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815169522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:28 Heat of formation + Delta-G solvation = -107.088072 kcal Electronic energy + Delta-G solvation = -24992.379759 eV Core-core repulsion = 21194.983257 eV Total energy + Delta-G solvation = -3797.396502 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49665 -41.39077 -38.88667 -38.07220 -37.31918 -34.88829 -34.27338 -32.39288 -31.76221 -31.22703 -29.65148 -28.91143 -26.89821 -25.23815 -24.02294 -23.45189 -22.61685 -21.93759 -20.20870 -19.10429 -18.96145 -18.60248 -17.95164 -17.89667 -17.00511 -16.58697 -16.46163 -16.30785 -15.99230 -15.57709 -15.06936 -14.94224 -14.67596 -14.39342 -14.16625 -14.03326 -13.82961 -13.70891 -13.67096 -13.58733 -13.33344 -13.00653 -12.86486 -12.64195 -12.59192 -12.41014 -12.30215 -11.85825 -11.85033 -11.72356 -11.63610 -11.34675 -10.92907 -10.66054 -10.40091 -9.32349 -8.62965 -8.36619 -6.45084 -0.31041 0.15957 1.34672 1.38295 1.49051 1.49239 1.61407 1.63042 2.06572 2.30445 2.78386 2.95458 2.96609 3.55541 3.63405 3.72454 3.93673 4.02099 4.12587 4.14593 4.22753 4.34157 4.37923 4.40528 4.49632 4.57135 4.68303 4.72245 4.74527 4.75685 4.84240 4.96171 5.00548 5.08046 5.12714 5.18692 5.28015 5.32268 5.41669 5.43116 5.57225 5.77773 5.91776 6.00799 6.58592 6.59490 6.66486 6.72839 7.19034 8.80682 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002376 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.183549 B =11782.684971 C =12802.198354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.082 3.918 3 N -0.576 5.576 4 H 0.432 0.568 5 C 0.120 3.880 6 C -0.133 4.133 7 C -0.058 4.058 8 C -0.173 4.173 9 C 0.512 3.488 10 O -0.542 6.542 11 O -0.352 6.352 12 C 0.073 3.927 13 C 0.052 3.948 14 O -0.407 6.407 15 C 0.178 3.822 16 C -0.547 4.547 17 H 0.026 0.974 18 C 0.010 3.990 19 N -0.943 5.943 20 Si 0.959 3.041 21 H -0.258 1.258 22 H -0.275 1.275 23 H -0.242 1.242 24 C -0.002 4.002 25 C -0.140 4.140 26 C -0.186 4.186 27 C -0.078 4.078 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.154 0.846 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.019 0.981 38 H 0.016 0.984 39 H 0.273 0.727 40 H 0.134 0.866 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.454 -7.677 -14.963 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 N -0.180 5.180 4 H 0.272 0.728 5 C 0.010 3.990 6 C -0.154 4.154 7 C -0.078 4.078 8 C -0.175 4.175 9 C 0.360 3.640 10 O -0.435 6.435 11 O -0.268 6.268 12 C 0.000 4.000 13 C -0.025 4.025 14 O -0.327 6.327 15 C 0.103 3.897 16 C -0.585 4.585 17 H 0.044 0.956 18 C -0.187 4.187 19 N -0.583 5.583 20 Si 0.780 3.220 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.165 1.165 24 C -0.020 4.020 25 C -0.145 4.145 26 C -0.192 4.192 27 C -0.135 4.135 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.171 0.829 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.152 0.848 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.562 -7.808 -14.704 30.505 hybrid contribution 1.128 0.680 0.089 1.320 sum -24.434 -7.127 -14.614 29.350 Atomic orbital electron populations 1.20628 0.84454 1.05274 1.04416 1.20708 0.95060 0.84512 1.02269 1.41751 1.02922 1.09557 1.63769 0.72794 1.18527 0.85832 0.93842 1.00806 1.19934 0.88524 1.00831 1.06099 1.20888 0.98761 0.92517 0.95604 1.18819 0.89163 0.94489 1.15062 1.21424 0.85501 0.85372 0.71741 1.90764 1.88519 1.15711 1.48505 1.86625 1.15208 1.41413 1.83549 1.23282 0.79072 0.93886 1.03789 1.22755 0.96818 0.94648 0.88263 1.87932 1.52679 1.53810 1.38306 1.20369 0.86473 0.87402 0.95501 1.21168 1.13946 1.20625 1.02764 0.95559 1.25897 1.00510 0.94723 0.97604 1.70041 1.38210 1.25745 1.24265 0.85562 0.77616 0.80138 0.78728 1.18298 1.19961 1.16482 1.20624 0.89156 0.99969 0.92292 1.19254 0.93665 0.92775 1.08819 1.20413 0.89163 0.96776 1.12863 1.20191 1.01642 0.89336 1.02323 0.89197 0.89561 0.88282 0.82854 0.84349 0.91421 0.87068 0.88920 0.91393 0.96351 0.96649 0.91792 0.84768 0.91366 0.89416 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.18 71.23 0.72 0.27 16 2 C 0.08 1.11 7.08 40.85 0.29 1.40 16 3 N -0.58 -8.27 6.05 -175.79 -1.06 -9.33 16 4 H 0.43 3.33 8.96 -92.71 -0.83 2.50 16 5 C 0.12 2.59 7.27 39.20 0.28 2.87 16 6 C -0.13 -2.96 10.00 22.09 0.22 -2.74 16 7 C -0.06 -1.60 9.53 22.31 0.21 -1.38 16 8 C -0.17 -5.28 5.87 -20.10 -0.12 -5.40 16 9 C 0.51 17.79 7.89 70.27 0.55 18.34 16 10 O -0.54 -20.27 16.12 19.82 0.32 -19.95 16 11 O -0.35 -12.59 9.42 -53.80 -0.51 -13.09 16 12 C 0.07 2.32 5.85 71.98 0.42 2.75 16 13 C 0.05 1.74 6.33 71.98 0.46 2.19 16 14 O -0.41 -19.40 10.30 -145.57 -1.50 -20.90 16 15 C 0.18 8.96 4.76 71.24 0.34 9.30 16 16 C -0.55 -33.87 9.99 25.60 0.26 -33.61 16 17 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 18 C 0.01 0.62 5.47 84.65 0.46 1.08 16 19 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 20 Si 0.96 43.21 27.47 68.60 1.88 45.09 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 24 C 0.00 -0.05 9.65 22.75 0.22 0.17 16 25 C -0.14 -3.40 6.34 -20.21 -0.13 -3.53 16 26 C -0.19 -3.42 6.32 -18.61 -0.12 -3.53 16 27 C -0.08 -1.04 10.17 71.24 0.72 -0.31 16 28 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.10 0.28 7.04 -2.39 -0.02 0.27 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.14 3.92 7.58 -2.91 -0.02 3.90 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 38 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 39 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.13 3.61 7.64 -2.91 -0.02 3.59 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 0.71 7.06 -2.39 -0.02 0.69 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -81.36 369.36 4.38 -76.98 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.15 Total: 13.00 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.80 Total: -12.13 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.76 Total: -68.99 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -1.69 Total: -53.95 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Total: -81.36 4.38 -76.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815169522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.112 kcal (2) G-P(sol) polarization free energy of solvation -81.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds