Wall clock time and date at job start Tue Mar 31 2020 11:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.36912 * 125.05899 * 2 1 4 4 H 0.97002 * 125.01539 * 0.04208 * 3 2 1 5 5 C 1.37087 * 109.97395 * 180.02562 * 3 2 1 6 6 C 1.40643 * 107.26413 * 0.02562 * 5 3 2 7 7 C 1.39535 * 120.05220 * 179.97438 * 6 5 3 8 8 C 1.37931 * 120.00216 * 359.80234 * 7 6 5 9 9 C 1.38297 * 120.60042 * 0.47713 * 8 7 6 10 10 C 1.39416 * 120.48854 * 359.47946 * 9 8 7 11 11 C 1.47363 * 120.21259 * 180.29701 * 10 9 8 12 12 O 1.21516 * 119.99684 * 179.97438 * 11 10 9 13 13 O 1.34764 * 120.00440 * 0.02562 * 11 10 9 14 14 C 1.45195 * 117.00287 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47157 * 179.97438 * 14 13 11 16 16 O 1.42905 * 109.46964 * 65.00021 * 15 14 13 17 17 C 1.42895 * 113.99573 * 180.02562 * 16 15 14 18 18 C 1.50709 * 109.46826 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99978 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99741 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00400 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99726 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47146 * 90.00289 * 22 20 18 24 24 H 1.48500 * 109.47342 * 209.99947 * 22 20 18 25 25 H 1.48501 * 109.47194 * 329.99973 * 22 20 18 26 26 C 1.34211 * 125.06375 * 180.02562 * 2 1 3 27 27 C 1.50707 * 126.55042 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47165 * 89.97374 * 1 2 3 29 29 H 1.09000 * 109.46875 * 209.97358 * 1 2 3 30 30 H 1.09002 * 109.46811 * 329.97279 * 1 2 3 31 31 H 1.07991 * 119.99807 * 180.02562 * 7 6 5 32 32 H 1.08004 * 119.70249 * 180.23723 * 8 7 6 33 33 H 1.08002 * 119.75926 * 179.76140 * 9 8 7 34 34 H 1.09002 * 109.47153 * 299.99767 * 14 13 11 35 35 H 1.08995 * 109.47538 * 59.99730 * 14 13 11 36 36 H 1.08997 * 109.46878 * 184.99641 * 15 14 13 37 37 H 1.08999 * 109.47145 * 304.99867 * 15 14 13 38 38 H 1.08997 * 109.47492 * 299.99439 * 17 16 15 39 39 H 1.09002 * 109.47489 * 60.00071 * 17 16 15 40 40 H 0.97002 * 120.00727 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.46948 * 89.98190 * 27 26 2 42 42 H 1.08997 * 109.46767 * 209.97983 * 27 26 2 43 43 H 1.08992 * 109.47196 * 329.97586 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2935 1.1207 0.0000 4 1 1.9629 2.0327 0.0006 5 6 3.6171 0.7639 -0.0006 6 6 3.6706 -0.6415 -0.0016 7 6 4.9041 -1.2938 -0.0029 8 6 6.0722 -0.5604 -0.0073 9 6 6.0354 0.8221 -0.0006 10 6 4.8157 1.4973 -0.0001 11 6 4.7836 2.9706 0.0004 12 8 3.7183 3.5550 0.0004 13 8 5.9357 3.6697 0.0000 14 6 5.8282 5.1177 0.0012 15 6 7.2290 5.7331 0.0011 16 8 7.8936 5.4044 -1.2205 17 6 9.2171 5.9334 -1.3226 18 6 9.8201 5.5268 -2.6426 19 1 9.2498 4.9244 -3.3341 20 6 11.0999 5.9240 -2.9674 21 7 11.7942 6.6580 -2.1255 22 14 11.8475 5.4196 -4.6032 23 1 11.5350 6.4476 -5.6283 24 1 13.3203 5.2974 -4.4577 25 1 11.2816 4.1127 -5.0240 26 6 2.2781 -1.0985 -0.0005 27 6 1.8027 -2.5287 -0.0006 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 4.9441 -2.3730 -0.0040 32 1 7.0243 -1.0703 -0.0122 33 1 6.9584 1.3829 -0.0003 34 1 5.2881 5.4426 -0.8881 35 1 5.2896 5.4413 0.8918 36 1 7.1498 6.8165 0.0915 37 1 7.7990 5.3390 0.8424 38 1 9.1797 7.0209 -1.2595 39 1 9.8282 5.5430 -0.5088 40 1 12.6947 6.9372 -2.3538 41 1 1.6874 -2.8731 -1.0283 42 1 2.5330 -3.1543 0.5125 43 1 0.8440 -2.5929 0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815186085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:33 Heat of formation + Delta-G solvation = -91.966616 kcal Electronic energy + Delta-G solvation = -25321.004236 eV Core-core repulsion = 21524.263450 eV Total energy + Delta-G solvation = -3796.740786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71017 -40.04456 -37.28559 -36.96506 -35.98907 -33.43367 -32.77548 -31.50147 -30.74559 -29.79189 -28.05740 -26.93907 -26.10378 -24.23477 -22.43071 -21.99770 -21.94901 -20.76470 -19.40465 -17.70919 -17.64750 -16.74601 -16.48998 -16.36524 -15.67550 -15.43047 -15.12759 -15.10894 -14.67008 -14.35355 -14.16009 -13.65256 -13.45982 -13.32118 -13.14677 -12.94004 -12.82950 -12.73271 -12.50984 -12.18660 -11.95623 -11.78955 -11.59032 -11.43662 -11.35299 -10.93774 -10.84754 -10.76763 -10.41134 -10.34809 -10.04567 -9.72892 -9.13138 -8.88070 -8.35584 -8.21752 -7.81707 -6.12034 -4.13682 0.46750 1.46835 2.13871 2.72846 2.78186 2.92659 3.30417 3.35394 3.41184 3.76195 4.32384 4.33710 4.55061 4.71777 4.76393 4.80769 4.89849 4.95572 5.05083 5.12857 5.20353 5.22041 5.24573 5.39029 5.45081 5.47958 5.51513 5.54215 5.72432 5.80188 5.85809 5.88414 5.93633 6.07382 6.19468 6.36444 6.45825 6.56106 6.62051 6.92187 7.04874 7.37409 7.39335 7.77916 7.82706 8.12251 8.51971 8.98967 9.51114 10.99485 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.002520 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.487749 B =11106.902928 C =11965.810527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.071 3.929 3 N -0.577 5.577 4 H 0.425 0.575 5 C 0.158 3.842 6 C -0.120 4.120 7 C -0.032 4.032 8 C -0.164 4.164 9 C -0.024 4.024 10 C -0.145 4.145 11 C 0.514 3.486 12 O -0.534 6.534 13 O -0.333 6.333 14 C 0.076 3.924 15 C 0.062 3.938 16 O -0.390 6.390 17 C 0.194 3.806 18 C -0.514 4.514 19 H 0.067 0.933 20 C 0.056 3.944 21 N -0.899 5.899 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.271 1.271 26 C -0.169 4.169 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.810 -16.502 7.883 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 N -0.181 5.181 4 H 0.264 0.736 5 C 0.047 3.953 6 C -0.125 4.125 7 C -0.050 4.050 8 C -0.183 4.183 9 C -0.043 4.043 10 C -0.149 4.149 11 C 0.361 3.639 12 O -0.427 6.427 13 O -0.248 6.248 14 C 0.002 3.998 15 C -0.016 4.016 16 O -0.310 6.310 17 C 0.120 3.880 18 C -0.553 4.553 19 H 0.085 0.915 20 C -0.145 4.145 21 N -0.538 5.538 22 Si 0.735 3.265 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.196 1.196 26 C -0.176 4.176 27 C -0.132 4.132 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.165 0.835 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.087 -16.187 7.756 27.692 hybrid contribution 0.531 0.816 -0.590 1.139 sum -20.556 -15.371 7.166 26.648 Atomic orbital electron populations 1.20470 0.87630 1.03671 1.03216 1.20183 0.93460 0.85463 1.04554 1.41838 1.03773 1.09089 1.63355 0.73568 1.17831 0.83833 0.93330 1.00289 1.18994 0.93533 0.91104 1.08845 1.20767 0.90263 0.99763 0.94232 1.20917 0.98391 0.93498 1.05517 1.21417 0.96600 0.94651 0.91667 1.18077 0.92001 0.88602 1.16234 1.21074 0.82167 0.88491 0.72156 1.90709 1.31658 1.71933 1.48354 1.86649 1.33137 1.21986 1.83070 1.23229 0.98468 0.75569 1.02524 1.22323 0.91143 0.97586 0.90551 1.87925 1.31614 1.76751 1.34737 1.20241 0.77028 0.93155 0.97568 1.21048 0.99056 1.33178 1.01979 0.91506 1.24948 0.96628 0.95077 0.97857 1.69957 1.11377 1.36540 1.35930 0.86328 0.78035 0.79151 0.82947 1.20483 1.21050 1.19559 1.20000 0.90168 0.94859 1.12554 1.20096 1.00663 0.90752 1.01667 0.90368 0.89650 0.91280 0.85446 0.84795 0.83469 0.90475 0.90437 0.91905 0.93118 0.97632 0.97456 0.92631 0.91819 0.91806 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.18 36.01 0.37 -0.19 16 2 C 0.07 0.70 7.09 -81.74 -0.58 0.12 16 3 N -0.58 -6.99 5.87 -6.75 -0.04 -7.02 16 4 H 0.42 4.98 7.54 -40.82 -0.31 4.67 16 5 C 0.16 2.18 6.87 -83.75 -0.58 1.61 16 6 C -0.12 -1.46 6.35 -105.15 -0.67 -2.13 16 7 C -0.03 -0.33 10.09 -39.21 -0.40 -0.73 16 8 C -0.16 -1.78 10.00 -39.67 -0.40 -2.18 16 9 C -0.02 -0.32 9.60 -39.12 -0.38 -0.70 16 10 C -0.14 -2.14 5.88 -104.89 -0.62 -2.75 16 11 C 0.51 8.47 7.89 34.44 0.27 8.75 16 12 O -0.53 -9.12 14.95 -19.28 -0.29 -9.41 16 13 O -0.33 -5.82 9.43 -43.45 -0.41 -6.23 16 14 C 0.08 1.24 5.85 37.16 0.22 1.45 16 15 C 0.06 1.14 6.33 37.16 0.24 1.37 16 16 O -0.39 -9.53 10.30 -38.80 -0.40 -9.92 16 17 C 0.19 5.33 5.69 36.01 0.20 5.53 16 18 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 19 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 22 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 26 C -0.17 -1.73 6.32 -102.68 -0.65 -2.38 16 27 C -0.07 -0.51 10.17 36.01 0.37 -0.15 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.38 7.05 -51.93 -0.37 0.02 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.15 1.94 7.59 -52.49 -0.40 1.54 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.33 7.06 -51.93 -0.37 -0.03 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -34.21 370.77 -8.91 -43.12 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.06 Total: -0.48 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.02 Total: -6.41 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.70 Total: -33.15 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.10 Total: -25.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.21 -8.91 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815186085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.849 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds