Wall clock time and date at job start Tue Mar 31 2020 11:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.36912 * 125.05899 * 2 1 4 4 H 0.97002 * 125.01539 * 0.04208 * 3 2 1 5 5 C 1.37087 * 109.97395 * 180.02562 * 3 2 1 6 6 C 1.40643 * 107.26413 * 0.02562 * 5 3 2 7 7 C 1.39535 * 120.05220 * 179.97438 * 6 5 3 8 8 C 1.37931 * 120.00216 * 359.80234 * 7 6 5 9 9 C 1.38297 * 120.60042 * 0.47713 * 8 7 6 10 10 C 1.39416 * 120.48854 * 359.47946 * 9 8 7 11 11 C 1.47363 * 120.21259 * 180.29701 * 10 9 8 12 12 O 1.21516 * 119.99684 * 179.97438 * 11 10 9 13 13 O 1.34764 * 120.00440 * 0.02562 * 11 10 9 14 14 C 1.45195 * 117.00287 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47157 * 179.97438 * 14 13 11 16 16 O 1.42905 * 109.46964 * 65.00021 * 15 14 13 17 17 C 1.42895 * 113.99573 * 180.02562 * 16 15 14 18 18 C 1.50709 * 109.46826 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99978 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99741 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00400 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99726 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47146 * 90.00289 * 22 20 18 24 24 H 1.48500 * 109.47342 * 209.99947 * 22 20 18 25 25 H 1.48501 * 109.47194 * 329.99973 * 22 20 18 26 26 C 1.34211 * 125.06375 * 180.02562 * 2 1 3 27 27 C 1.50707 * 126.55042 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47165 * 89.97374 * 1 2 3 29 29 H 1.09000 * 109.46875 * 209.97358 * 1 2 3 30 30 H 1.09002 * 109.46811 * 329.97279 * 1 2 3 31 31 H 1.07991 * 119.99807 * 180.02562 * 7 6 5 32 32 H 1.08004 * 119.70249 * 180.23723 * 8 7 6 33 33 H 1.08002 * 119.75926 * 179.76140 * 9 8 7 34 34 H 1.09002 * 109.47153 * 299.99767 * 14 13 11 35 35 H 1.08995 * 109.47538 * 59.99730 * 14 13 11 36 36 H 1.08997 * 109.46878 * 184.99641 * 15 14 13 37 37 H 1.08999 * 109.47145 * 304.99867 * 15 14 13 38 38 H 1.08997 * 109.47492 * 299.99439 * 17 16 15 39 39 H 1.09002 * 109.47489 * 60.00071 * 17 16 15 40 40 H 0.97002 * 120.00727 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.46948 * 89.98190 * 27 26 2 42 42 H 1.08997 * 109.46767 * 209.97983 * 27 26 2 43 43 H 1.08992 * 109.47196 * 329.97586 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2935 1.1207 0.0000 4 1 1.9629 2.0327 0.0006 5 6 3.6171 0.7639 -0.0006 6 6 3.6706 -0.6415 -0.0016 7 6 4.9041 -1.2938 -0.0029 8 6 6.0722 -0.5604 -0.0073 9 6 6.0354 0.8221 -0.0006 10 6 4.8157 1.4973 -0.0001 11 6 4.7836 2.9706 0.0004 12 8 3.7183 3.5550 0.0004 13 8 5.9357 3.6697 0.0000 14 6 5.8282 5.1177 0.0012 15 6 7.2290 5.7331 0.0011 16 8 7.8936 5.4044 -1.2205 17 6 9.2171 5.9334 -1.3226 18 6 9.8201 5.5268 -2.6426 19 1 9.2498 4.9244 -3.3341 20 6 11.0999 5.9240 -2.9674 21 7 11.7942 6.6580 -2.1255 22 14 11.8475 5.4196 -4.6032 23 1 11.5350 6.4476 -5.6283 24 1 13.3203 5.2974 -4.4577 25 1 11.2816 4.1127 -5.0240 26 6 2.2781 -1.0985 -0.0005 27 6 1.8027 -2.5287 -0.0006 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 4.9441 -2.3730 -0.0040 32 1 7.0243 -1.0703 -0.0122 33 1 6.9584 1.3829 -0.0003 34 1 5.2881 5.4426 -0.8881 35 1 5.2896 5.4413 0.8918 36 1 7.1498 6.8165 0.0915 37 1 7.7990 5.3390 0.8424 38 1 9.1797 7.0209 -1.2595 39 1 9.8282 5.5430 -0.5088 40 1 12.6947 6.9372 -2.3538 41 1 1.6874 -2.8731 -1.0283 42 1 2.5330 -3.1543 0.5125 43 1 0.8440 -2.5929 0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815186085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:32 Heat of formation + Delta-G solvation = -111.776024 kcal Electronic energy + Delta-G solvation = -25321.863236 eV Core-core repulsion = 21524.263450 eV Total energy + Delta-G solvation = -3797.599787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59915 -41.28400 -38.79763 -38.06434 -37.46066 -34.96274 -34.21549 -32.40881 -31.73724 -31.09883 -29.03686 -28.74449 -26.83168 -25.39137 -24.54211 -23.40055 -22.86479 -21.84639 -20.25960 -18.82010 -18.74633 -18.54746 -17.96803 -17.73687 -17.09281 -16.68276 -16.44499 -16.21420 -15.96830 -15.93369 -15.26030 -15.08249 -14.51560 -14.30220 -14.06793 -13.82646 -13.72972 -13.66986 -13.55554 -13.29987 -13.18125 -12.93994 -12.81458 -12.72452 -12.67444 -12.46819 -12.42905 -12.11591 -12.02712 -11.81308 -11.54566 -11.30138 -10.91435 -10.61913 -10.29621 -9.25839 -8.63187 -8.33525 -6.45734 -0.51437 0.54362 1.18546 1.39559 1.42137 1.54397 1.54541 1.76199 2.09378 2.33550 2.80665 3.00281 3.02477 3.47597 3.64522 3.86995 3.89728 3.93987 4.05025 4.15429 4.29854 4.33958 4.35750 4.39578 4.48301 4.58645 4.71227 4.71474 4.78533 4.83206 4.93581 5.00830 5.09133 5.13080 5.15415 5.20070 5.25315 5.35485 5.48894 5.52824 5.68699 5.84872 5.93457 6.06687 6.47086 6.52008 6.56762 6.77607 7.25745 8.78629 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.002520 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.487749 B =11106.902928 C =11965.810527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.062 3.938 3 N -0.584 5.584 4 H 0.421 0.579 5 C 0.132 3.868 6 C -0.136 4.136 7 C -0.020 4.020 8 C -0.165 4.165 9 C -0.034 4.034 10 C -0.173 4.173 11 C 0.510 3.490 12 O -0.548 6.548 13 O -0.350 6.350 14 C 0.079 3.921 15 C 0.055 3.945 16 O -0.409 6.409 17 C 0.208 3.792 18 C -0.550 4.550 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.982 3.018 23 H -0.268 1.268 24 H -0.272 1.272 25 H -0.266 1.266 26 C -0.176 4.176 27 C -0.073 4.073 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.058 0.942 38 H -0.008 1.008 39 H -0.009 1.009 40 H 0.272 0.728 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.672 -18.748 7.434 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 N -0.188 5.188 4 H 0.261 0.739 5 C 0.021 3.979 6 C -0.141 4.141 7 C -0.038 4.038 8 C -0.184 4.184 9 C -0.054 4.054 10 C -0.177 4.177 11 C 0.359 3.641 12 O -0.442 6.442 13 O -0.266 6.266 14 C 0.006 3.994 15 C -0.022 4.022 16 O -0.330 6.330 17 C 0.133 3.867 18 C -0.588 4.588 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.805 3.195 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.190 1.190 26 C -0.183 4.183 27 C -0.130 4.130 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.974 -18.441 7.326 29.607 hybrid contribution 0.717 1.480 -0.369 1.686 sum -21.257 -16.961 6.956 28.070 Atomic orbital electron populations 1.20607 0.84892 1.04982 1.04236 1.20884 0.95176 0.84696 1.03653 1.42013 1.03651 1.09656 1.63451 0.73945 1.18086 0.84203 0.94337 1.01286 1.19467 0.95226 0.90572 1.08827 1.21185 0.89331 1.01446 0.91853 1.21214 0.99943 0.92461 1.04802 1.21489 0.95760 0.95915 0.92189 1.18153 0.93268 0.87537 1.18781 1.21476 0.81635 0.89288 0.71720 1.90677 1.31818 1.72342 1.49329 1.86640 1.34066 1.22433 1.83434 1.23227 0.97073 0.75406 1.03727 1.22639 0.91794 0.99279 0.88486 1.87872 1.30322 1.76930 1.37828 1.19880 0.78311 0.92107 0.96384 1.21368 1.00158 1.34270 1.02985 0.92324 1.25936 0.96695 0.94500 1.01967 1.70052 1.11927 1.36866 1.37905 0.85199 0.77459 0.79049 0.77814 1.19329 1.19677 1.18995 1.20466 0.89158 0.96609 1.12026 1.20191 1.01737 0.88480 1.02549 0.89362 0.87525 0.90767 0.81982 0.82165 0.84423 0.91087 0.87344 0.89794 0.92393 0.98987 0.99145 0.91953 0.91044 0.91014 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.18 71.24 0.73 -0.18 16 2 C 0.06 1.17 7.09 40.85 0.29 1.46 16 3 N -0.58 -14.30 5.87 -175.26 -1.03 -15.33 16 4 H 0.42 10.28 7.54 -92.71 -0.70 9.58 16 5 C 0.13 3.71 6.87 39.46 0.27 3.98 16 6 C -0.14 -3.17 6.35 -20.21 -0.13 -3.30 16 7 C -0.02 -0.38 10.09 22.51 0.23 -0.15 16 8 C -0.17 -3.42 10.00 22.21 0.22 -3.19 16 9 C -0.03 -0.94 9.60 22.57 0.22 -0.72 16 10 C -0.17 -5.32 5.88 -20.04 -0.12 -5.44 16 11 C 0.51 17.61 7.89 70.22 0.55 18.16 16 12 O -0.55 -19.44 14.95 19.78 0.30 -19.15 16 13 O -0.35 -12.72 9.43 -54.09 -0.51 -13.23 16 14 C 0.08 2.62 5.85 71.98 0.42 3.04 16 15 C 0.05 2.05 6.33 71.98 0.46 2.51 16 16 O -0.41 -20.60 10.30 -145.57 -1.50 -22.10 16 17 C 0.21 11.80 5.69 71.24 0.41 12.20 16 18 C -0.55 -33.31 9.43 25.60 0.24 -33.07 16 19 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 20 C 0.01 0.45 5.46 84.66 0.46 0.91 16 21 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 22 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C -0.18 -3.29 6.32 -18.61 -0.12 -3.41 16 27 C -0.07 -0.78 10.17 71.24 0.72 -0.05 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 0.61 7.05 -2.39 -0.02 0.60 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.16 1.88 8.06 -2.92 -0.02 1.86 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.14 3.86 7.59 -2.91 -0.02 3.84 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.57 7.06 -2.39 -0.02 0.55 16 Total: -1.00 -75.32 370.77 4.75 -70.57 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.33 Total: 15.26 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.85 Total: -7.25 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -0.74 Total: -70.88 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -1.71 Total: -54.48 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.32 4.75 -70.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815186085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.206 kcal (2) G-P(sol) polarization free energy of solvation -75.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds