Wall clock time and date at job start Tue Mar 31 2020 12:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47084 * 2 1 4 4 C 1.47201 * 109.47118 * 239.99881 * 2 1 3 5 5 N 2.60799 * 109.47107 * 239.99985 * 2 1 3 6 6 C 1.50696 * 109.47367 * 120.00003 * 2 1 3 7 7 C 1.38369 * 119.85085 * 180.02562 * 6 2 1 8 8 C 1.37939 * 120.15117 * 180.27878 * 7 6 2 9 9 C 1.39636 * 119.84570 * 359.49074 * 8 7 6 10 10 C 1.47730 * 120.14626 * 180.23727 * 9 8 7 11 11 O 1.21477 * 119.99391 * 180.27517 * 10 9 8 12 12 O 1.34707 * 120.00059 * 0.26936 * 10 9 8 13 13 C 1.45209 * 116.99638 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46887 * 180.02562 * 13 12 10 15 15 O 1.42895 * 109.47161 * 64.99361 * 14 13 12 16 16 C 1.42902 * 114.00041 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47164 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00257 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99812 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00194 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99813 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47270 * 90.00088 * 21 19 17 23 23 H 1.48504 * 109.46897 * 209.99961 * 21 19 17 24 24 H 1.48495 * 109.46944 * 330.00029 * 21 19 17 25 25 C 1.39622 * 119.70088 * 0.50529 * 9 8 7 26 26 C 1.37944 * 119.85103 * 359.74711 * 25 9 8 27 27 H 1.09001 * 109.46968 * 299.99770 * 1 2 3 28 28 H 1.09001 * 109.46967 * 60.00361 * 1 2 3 29 29 H 1.09001 * 109.46647 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47258 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.46799 * 299.99906 * 3 2 1 32 32 H 1.09001 * 109.47076 * 59.99714 * 3 2 1 33 33 H 1.08002 * 119.92093 * 359.97438 * 7 6 2 34 34 H 1.07998 * 120.07819 * 179.72254 * 8 7 6 35 35 H 1.08999 * 109.46841 * 299.99830 * 13 12 10 36 36 H 1.08998 * 109.46831 * 60.00090 * 13 12 10 37 37 H 1.08991 * 109.46993 * 184.99956 * 14 13 12 38 38 H 1.09007 * 109.46683 * 304.99946 * 14 13 12 39 39 H 1.09001 * 109.47497 * 300.00850 * 16 15 14 40 40 H 1.09005 * 109.46699 * 60.00427 * 16 15 14 41 41 H 0.96996 * 120.00066 * 180.02562 * 20 19 17 42 42 H 1.08003 * 120.07733 * 179.72492 * 25 9 8 43 43 H 1.08000 * 119.92884 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0324 -0.7104 1.2304 7 6 3.3935 -0.8345 1.4465 8 6 3.8601 -1.4886 2.5678 9 6 2.9555 -2.0167 3.4911 10 6 3.4480 -2.7138 4.6969 11 8 2.6586 -3.1766 5.4958 12 8 4.7724 -2.8364 4.9102 13 6 5.1841 -3.5340 6.1154 14 6 6.7121 -3.5727 6.1855 15 8 7.2163 -2.2432 6.3271 16 6 8.6412 -2.1670 6.4029 17 6 9.0601 -0.7269 6.5508 18 1 8.3129 0.0521 6.5840 19 6 10.3973 -0.4040 6.6437 20 7 11.3073 -1.3526 6.6027 21 14 10.9165 1.3810 6.8276 22 1 10.9873 1.7298 8.2694 23 1 12.2508 1.5750 6.2053 24 1 9.9242 2.2569 6.1546 25 6 1.5835 -1.8878 3.2668 26 6 1.1304 -1.2359 2.1387 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 4.0920 -0.4227 0.7332 34 1 4.9227 -1.5887 2.7330 35 1 4.7939 -3.0115 6.9888 36 1 4.7949 -4.5519 6.0969 37 1 7.0214 -4.1718 7.0418 38 1 7.1066 -4.0154 5.2708 39 1 8.9903 -2.7369 7.2640 40 1 9.0761 -2.5806 5.4930 41 1 12.2480 -1.1255 6.6684 42 1 0.8784 -2.2978 3.9748 43 1 0.0694 -1.1358 1.9638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815242411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:34 Heat of formation + Delta-G solvation = -89.302919 kcal Electronic energy + Delta-G solvation = -24925.406029 eV Core-core repulsion = 21128.780749 eV Total energy + Delta-G solvation = -3796.625280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77221 -39.85162 -37.55116 -36.96692 -36.02080 -35.18483 -32.79354 -31.53896 -30.96809 -29.81313 -27.98185 -26.96733 -25.22380 -23.59649 -22.46171 -22.38859 -22.01622 -20.83788 -18.37224 -17.83132 -17.09561 -16.50882 -16.42724 -15.87096 -15.44021 -15.32899 -14.97700 -14.65558 -14.42631 -14.31827 -14.07272 -13.89345 -13.80633 -13.44477 -13.19286 -13.07859 -12.70664 -12.60541 -12.47873 -12.42107 -12.12359 -11.98711 -11.87968 -11.47013 -11.45586 -11.15374 -10.96278 -10.86742 -10.79526 -10.48204 -10.39970 -10.06730 -9.30636 -9.24752 -9.15020 -8.89910 -8.23579 -6.13757 -4.15543 0.37437 1.05978 2.30298 2.37221 2.47294 2.69170 3.28831 3.32027 3.33908 3.39159 3.62387 3.99247 4.22204 4.30547 4.36689 4.57272 4.63112 4.67762 4.74150 5.00629 5.04894 5.13522 5.16836 5.19948 5.22479 5.22905 5.25493 5.43116 5.46856 5.52177 5.63275 5.69550 5.82783 5.86329 5.95707 6.03635 6.07536 6.14326 6.48930 6.52136 7.03234 7.15505 7.37570 7.75776 7.78440 8.10470 8.50006 8.97002 9.49319 10.97793 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.002650 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.164655 B =10564.744259 C =12073.137753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 C -0.142 4.142 4 C 0.214 3.786 5 N -0.423 5.423 6 C -0.055 4.055 7 C -0.120 4.120 8 C -0.052 4.052 9 C -0.115 4.115 10 C 0.506 3.494 11 O -0.513 6.513 12 O -0.335 6.335 13 C 0.075 3.925 14 C 0.061 3.939 15 O -0.391 6.391 16 C 0.194 3.806 17 C -0.515 4.515 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.054 4.054 26 C -0.123 4.123 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.141 0.859 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.148 1.590 -11.314 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.073 3.927 3 C -0.200 4.200 4 C -0.104 4.104 5 N -0.097 5.097 6 C -0.057 4.057 7 C -0.138 4.138 8 C -0.070 4.070 9 C -0.116 4.116 10 C 0.351 3.649 11 O -0.403 6.403 12 O -0.251 6.251 13 C 0.002 3.998 14 C -0.016 4.016 15 O -0.311 6.311 16 C 0.120 3.880 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.072 4.072 26 C -0.141 4.141 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.159 0.841 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.668 0.758 -12.462 25.879 hybrid contribution 0.597 0.633 0.636 1.078 sum -22.072 1.391 -11.825 25.079 Atomic orbital electron populations 1.22029 0.90725 1.03681 1.04046 1.17148 0.96984 0.94450 0.84118 1.21966 1.02571 0.91494 1.03947 1.28873 0.93676 0.93744 0.94138 1.81247 1.08270 1.08727 1.11486 1.19709 0.93873 0.97578 0.94500 1.21037 0.94762 0.99840 0.98148 1.21624 1.01001 0.92688 0.91736 1.19268 0.94270 1.03487 0.94611 1.21156 0.81322 0.77010 0.85412 1.90809 1.56957 1.46349 1.46232 1.86637 1.23790 1.70340 1.44337 1.23258 0.95352 0.96145 0.85049 1.22327 0.90391 0.88502 1.00427 1.87917 1.25744 1.23007 1.94382 1.20240 0.74239 0.98037 0.95465 1.21042 0.92002 0.91987 1.50279 0.91498 1.24952 0.96082 0.98314 0.95152 1.69956 1.01092 1.32423 1.50310 0.86330 0.77851 0.83919 0.78365 1.20449 1.21066 1.19571 1.21274 0.93898 0.95353 0.96682 1.21074 1.00206 0.98821 0.93977 0.89659 0.91032 0.91085 0.91058 0.91052 0.89816 0.85043 0.83456 0.90316 0.90293 0.91836 0.93162 0.97615 0.97494 0.92614 0.84140 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 7.08 37.16 0.26 -0.23 16 2 C 0.08 0.44 0.78 -158.45 -0.12 0.31 16 3 C -0.14 -0.63 8.24 37.16 0.31 -0.32 16 4 C 0.21 1.89 13.46 -20.76 -0.28 1.62 16 5 N -0.42 -5.02 18.54 42.15 0.78 -4.24 16 6 C -0.06 -0.42 4.75 -104.53 -0.50 -0.91 16 7 C -0.12 -1.10 8.78 -39.64 -0.35 -1.45 16 8 C -0.05 -0.59 9.62 -39.17 -0.38 -0.97 16 9 C -0.12 -1.40 5.87 -104.98 -0.62 -2.02 16 10 C 0.51 7.62 7.90 34.61 0.27 7.89 16 11 O -0.51 -8.45 16.14 -19.25 -0.31 -8.76 16 12 O -0.34 -5.53 9.44 -43.29 -0.41 -5.94 16 13 C 0.08 1.18 5.85 37.16 0.22 1.40 16 14 C 0.06 1.10 6.33 37.16 0.24 1.33 16 15 O -0.39 -9.32 10.30 -38.80 -0.40 -9.72 16 16 C 0.19 5.26 5.69 36.00 0.20 5.46 16 17 C -0.51 -15.04 9.43 -34.44 -0.32 -15.37 16 18 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 21 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.05 -0.52 9.60 -39.17 -0.38 -0.89 16 26 C -0.12 -0.87 8.96 -39.64 -0.36 -1.23 16 27 H 0.08 0.16 7.51 -51.93 -0.39 -0.23 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.24 7.50 -51.93 -0.39 -0.15 16 30 H 0.07 0.36 7.37 -51.93 -0.38 -0.02 16 31 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.13 1.06 7.55 -52.49 -0.40 0.66 16 34 H 0.15 1.76 7.61 -52.49 -0.40 1.37 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.14 1.25 7.65 -52.48 -0.40 0.85 16 43 H 0.14 0.57 5.87 -52.49 -0.31 0.27 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -34.84 376.81 -6.85 -41.70 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -6.02 Total: -5.55 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.89 Total: -3.86 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 1.52 Total: -30.16 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.12 Total: -24.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.84 -6.85 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815242411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.607 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds