Wall clock time and date at job start Tue Mar 31 2020 12:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47084 * 2 1 4 4 C 1.47201 * 109.47118 * 239.99881 * 2 1 3 5 5 N 2.60799 * 109.47107 * 239.99985 * 2 1 3 6 6 C 1.50696 * 109.47367 * 120.00003 * 2 1 3 7 7 C 1.38369 * 119.85085 * 180.02562 * 6 2 1 8 8 C 1.37939 * 120.15117 * 180.27878 * 7 6 2 9 9 C 1.39636 * 119.84570 * 359.49074 * 8 7 6 10 10 C 1.47730 * 120.14626 * 180.23727 * 9 8 7 11 11 O 1.21477 * 119.99391 * 180.27517 * 10 9 8 12 12 O 1.34707 * 120.00059 * 0.26936 * 10 9 8 13 13 C 1.45209 * 116.99638 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46887 * 180.02562 * 13 12 10 15 15 O 1.42895 * 109.47161 * 64.99361 * 14 13 12 16 16 C 1.42902 * 114.00041 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47164 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00257 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99812 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00194 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99813 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47270 * 90.00088 * 21 19 17 23 23 H 1.48504 * 109.46897 * 209.99961 * 21 19 17 24 24 H 1.48495 * 109.46944 * 330.00029 * 21 19 17 25 25 C 1.39622 * 119.70088 * 0.50529 * 9 8 7 26 26 C 1.37944 * 119.85103 * 359.74711 * 25 9 8 27 27 H 1.09001 * 109.46968 * 299.99770 * 1 2 3 28 28 H 1.09001 * 109.46967 * 60.00361 * 1 2 3 29 29 H 1.09001 * 109.46647 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47258 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.46799 * 299.99906 * 3 2 1 32 32 H 1.09001 * 109.47076 * 59.99714 * 3 2 1 33 33 H 1.08002 * 119.92093 * 359.97438 * 7 6 2 34 34 H 1.07998 * 120.07819 * 179.72254 * 8 7 6 35 35 H 1.08999 * 109.46841 * 299.99830 * 13 12 10 36 36 H 1.08998 * 109.46831 * 60.00090 * 13 12 10 37 37 H 1.08991 * 109.46993 * 184.99956 * 14 13 12 38 38 H 1.09007 * 109.46683 * 304.99946 * 14 13 12 39 39 H 1.09001 * 109.47497 * 300.00850 * 16 15 14 40 40 H 1.09005 * 109.46699 * 60.00427 * 16 15 14 41 41 H 0.96996 * 120.00066 * 180.02562 * 20 19 17 42 42 H 1.08003 * 120.07733 * 179.72492 * 25 9 8 43 43 H 1.08000 * 119.92884 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0324 -0.7104 1.2304 7 6 3.3935 -0.8345 1.4465 8 6 3.8601 -1.4886 2.5678 9 6 2.9555 -2.0167 3.4911 10 6 3.4480 -2.7138 4.6969 11 8 2.6586 -3.1766 5.4958 12 8 4.7724 -2.8364 4.9102 13 6 5.1841 -3.5340 6.1154 14 6 6.7121 -3.5727 6.1855 15 8 7.2163 -2.2432 6.3271 16 6 8.6412 -2.1670 6.4029 17 6 9.0601 -0.7269 6.5508 18 1 8.3129 0.0521 6.5840 19 6 10.3973 -0.4040 6.6437 20 7 11.3073 -1.3526 6.6027 21 14 10.9165 1.3810 6.8276 22 1 10.9873 1.7298 8.2694 23 1 12.2508 1.5750 6.2053 24 1 9.9242 2.2569 6.1546 25 6 1.5835 -1.8878 3.2668 26 6 1.1304 -1.2359 2.1387 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 4.0920 -0.4227 0.7332 34 1 4.9227 -1.5887 2.7330 35 1 4.7939 -3.0115 6.9888 36 1 4.7949 -4.5519 6.0969 37 1 7.0214 -4.1718 7.0418 38 1 7.1066 -4.0154 5.2708 39 1 8.9903 -2.7369 7.2640 40 1 9.0761 -2.5806 5.4930 41 1 12.2480 -1.1255 6.6684 42 1 0.8784 -2.2978 3.9748 43 1 0.0694 -1.1358 1.9638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815242411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:33 Heat of formation + Delta-G solvation = -109.281512 kcal Electronic energy + Delta-G solvation = -24926.272366 eV Core-core repulsion = 21128.780749 eV Total energy + Delta-G solvation = -3797.491617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75149 -40.72265 -38.81056 -38.14752 -37.40163 -35.87013 -34.95467 -32.29428 -32.01135 -31.01684 -29.02674 -28.29653 -26.00788 -24.63355 -24.34830 -23.31926 -23.09471 -21.84748 -19.25440 -18.72101 -18.63364 -18.06591 -17.92616 -17.05938 -16.63264 -16.42831 -16.22575 -15.97057 -15.73079 -15.26163 -15.02652 -14.70444 -14.57202 -14.51242 -14.35703 -14.06828 -13.83182 -13.59591 -13.39234 -13.19165 -13.07066 -12.92144 -12.76868 -12.70932 -12.63267 -12.48147 -12.37037 -12.09295 -11.99852 -11.76971 -11.72536 -11.59708 -11.29298 -10.90602 -10.28750 -10.03856 -10.01635 -8.33040 -6.45301 -0.47171 0.33092 1.36039 1.40247 1.42921 1.55061 1.57812 1.69172 1.71487 2.34044 2.57791 2.96928 3.01016 3.04330 3.37496 3.60457 3.71958 3.89981 3.92510 3.99619 4.04415 4.08730 4.31144 4.38252 4.41887 4.50111 4.62758 4.67748 4.84109 4.84803 4.88130 4.91530 4.96950 4.98987 5.15324 5.18019 5.27704 5.29943 5.32319 5.38965 5.46548 5.53549 5.76767 5.94083 6.48208 6.48584 6.61164 6.78362 7.26337 8.79177 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.002650 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.164655 B =10564.744259 C =12073.137753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.144 4.144 4 C 0.237 3.763 5 N -0.481 5.481 6 C -0.045 4.045 7 C -0.125 4.125 8 C -0.067 4.067 9 C -0.140 4.140 10 C 0.504 3.496 11 O -0.533 6.533 12 O -0.354 6.354 13 C 0.079 3.921 14 C 0.053 3.947 15 O -0.408 6.408 16 C 0.208 3.792 17 C -0.549 4.549 18 H 0.061 0.939 19 C 0.007 3.993 20 N -0.930 5.930 21 Si 0.982 3.018 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.264 1.264 25 C -0.054 4.054 26 C -0.106 4.106 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.055 0.945 39 H -0.008 1.008 40 H -0.011 1.011 41 H 0.271 0.729 42 H 0.148 0.852 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.295 3.327 -11.769 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.078 3.922 3 C -0.202 4.202 4 C -0.080 4.080 5 N -0.156 5.156 6 C -0.047 4.047 7 C -0.143 4.143 8 C -0.086 4.086 9 C -0.141 4.141 10 C 0.351 3.649 11 O -0.425 6.425 12 O -0.270 6.270 13 C 0.005 3.995 14 C -0.023 4.023 15 O -0.328 6.328 16 C 0.133 3.867 17 C -0.587 4.587 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.805 3.195 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.188 1.188 25 C -0.072 4.072 26 C -0.123 4.123 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.010 0.990 40 H 0.006 0.994 41 H 0.080 0.920 42 H 0.166 0.834 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -24.831 2.478 -12.922 28.101 hybrid contribution 1.194 0.046 0.731 1.401 sum -23.637 2.524 -12.191 26.715 Atomic orbital electron populations 1.22146 0.88114 1.04555 1.05903 1.17405 0.98858 0.94422 0.81564 1.22037 1.02064 0.90602 1.05475 1.29481 0.92096 0.92465 0.93982 1.81272 1.10257 1.10617 1.13504 1.19947 0.93111 0.96537 0.95081 1.21160 0.96090 0.99562 0.97469 1.21512 1.00165 0.94067 0.92837 1.19295 0.95644 1.05079 0.94055 1.21691 0.80477 0.76665 0.86065 1.90779 1.57005 1.47525 1.47174 1.86635 1.25099 1.70762 1.44537 1.23236 0.93524 0.97800 0.84905 1.22646 0.91946 0.86169 1.01560 1.87863 1.23733 1.26725 1.94498 1.19873 0.75991 0.97026 0.93804 1.21376 0.92741 0.92837 1.51736 0.92117 1.25952 0.95738 1.03478 0.93996 1.70058 1.01680 1.34892 1.50269 0.85193 0.77737 0.77661 0.78904 1.19254 1.19903 1.18814 1.21474 0.92649 0.95410 0.97687 1.21473 1.02064 0.96555 0.92225 0.87197 0.89953 0.90718 0.92085 0.89727 0.88135 0.84455 0.85344 0.90748 0.87236 0.89841 0.92656 0.99010 0.99356 0.92000 0.83413 0.80109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.36 7.08 71.98 0.51 0.15 16 2 C 0.08 0.69 0.78 -54.73 -0.04 0.65 16 3 C -0.14 -0.86 8.24 71.98 0.59 -0.27 16 4 C 0.24 3.84 13.46 89.44 1.20 5.05 16 5 N -0.48 -11.23 18.54 20.01 0.37 -10.86 16 6 C -0.05 -0.57 4.75 -19.80 -0.09 -0.67 16 7 C -0.12 -2.22 8.78 22.23 0.20 -2.03 16 8 C -0.07 -1.58 9.62 22.54 0.22 -1.36 16 9 C -0.14 -3.42 5.87 -20.10 -0.12 -3.54 16 10 C 0.50 15.52 7.90 70.33 0.56 16.07 16 11 O -0.53 -17.65 16.14 19.91 0.32 -17.33 16 12 O -0.35 -12.08 9.44 -53.51 -0.51 -12.58 16 13 C 0.08 2.48 5.85 71.98 0.42 2.90 16 14 C 0.05 1.96 6.33 71.98 0.46 2.41 16 15 O -0.41 -20.11 10.30 -145.56 -1.50 -21.61 16 16 C 0.21 11.67 5.69 71.24 0.41 12.07 16 17 C -0.55 -32.83 9.43 25.60 0.24 -32.59 16 18 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 19 C 0.01 0.40 5.46 84.66 0.46 0.86 16 20 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 21 Si 0.98 44.21 29.54 68.60 2.03 46.23 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 C -0.05 -0.95 9.60 22.53 0.22 -0.73 16 26 C -0.11 -1.16 8.96 22.23 0.20 -0.96 16 27 H 0.11 -0.21 7.51 -2.39 -0.02 -0.23 16 28 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.07 0.17 7.50 -2.39 -0.02 0.16 16 30 H 0.06 0.51 7.37 -2.39 -0.02 0.49 16 31 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.14 2.21 7.55 -2.91 -0.02 2.19 16 34 H 0.13 3.39 7.61 -2.91 -0.02 3.37 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.15 2.37 7.65 -2.91 -0.02 2.34 16 43 H 0.18 0.54 5.87 -2.91 -0.02 0.52 16 Total: -1.00 -77.65 376.81 7.44 -70.21 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.02 Total: 3.32 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.42 Total: -1.97 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: 0.66 Total: -66.28 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.68 Total: -51.52 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.65 7.44 -70.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815242411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.070 kcal (2) G-P(sol) polarization free energy of solvation -77.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds