Wall clock time and date at job start Tue Mar 31 2020 11:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99692 * 2 1 4 4 O 1.20818 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99730 * 180.02562 * 3 2 1 6 6 C 1.52995 * 113.28408 * 313.05990 * 5 3 2 7 7 C 1.53501 * 114.20567 * 179.97438 * 5 3 2 8 8 N 1.47066 * 87.98631 * 220.14578 * 7 5 3 9 9 C 1.34775 * 136.05691 * 207.08518 * 8 7 5 10 10 O 1.21278 * 120.00248 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.99826 * 179.97438 * 9 8 7 12 12 C 1.50702 * 109.46876 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.13298 * 265.00052 * 12 11 9 14 14 C 1.38610 * 120.24856 * 179.97438 * 13 12 11 15 15 C 1.38657 * 120.50115 * 0.02562 * 14 13 12 16 16 C 1.37594 * 120.25136 * 359.97438 * 15 14 13 17 17 C 1.40705 * 120.12024 * 85.26015 * 12 11 9 18 18 C 1.41391 * 120.24871 * 0.02562 * 17 12 11 19 19 H 1.08005 * 119.99677 * 334.27449 * 18 17 12 20 20 C 1.39944 * 120.00108 * 154.27693 * 18 17 12 21 21 N 1.30818 * 119.99816 * 343.65995 * 20 18 17 22 22 Si 1.86800 * 119.99967 * 163.66543 * 20 18 17 23 23 H 1.48491 * 109.47398 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47083 * 119.99778 * 22 20 18 25 25 H 1.48498 * 109.46937 * 239.99532 * 22 20 18 26 26 C 1.47069 * 87.88355 * 27.34358 * 8 7 5 27 27 H 1.08991 * 109.47217 * 300.00213 * 1 2 3 28 28 H 1.08997 * 109.47275 * 60.00911 * 1 2 3 29 29 H 1.09007 * 109.46659 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47431 * 286.93754 * 6 5 3 31 31 H 1.08997 * 109.47298 * 46.93698 * 6 5 3 32 32 H 1.09001 * 109.47838 * 166.93570 * 6 5 3 33 33 H 1.08995 * 113.46663 * 105.36730 * 7 5 3 34 34 H 1.08998 * 113.46636 * 334.92230 * 7 5 3 35 35 H 1.09008 * 109.46793 * 59.99921 * 11 9 8 36 36 H 1.08995 * 109.47048 * 299.99947 * 11 9 8 37 37 H 1.07995 * 119.87268 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.74859 * 180.02562 * 14 13 12 39 39 H 1.08003 * 119.87397 * 180.02562 * 15 14 13 40 40 H 1.07995 * 120.12994 * 179.97438 * 16 15 14 41 41 H 0.97001 * 119.99886 * 180.02562 * 21 20 18 42 42 H 1.08996 * 113.46771 * 87.44187 * 26 8 7 43 43 H 1.09004 * 113.46670 * 217.87844 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2208 0.3482 1.0258 7 6 4.1215 2.7060 -0.0011 8 7 5.1499 2.2512 -0.9490 9 6 6.4064 2.6196 -1.2682 10 8 6.9292 3.5516 -0.6948 11 6 7.1617 1.8734 -2.3378 12 6 8.5316 2.4797 -2.5011 13 6 8.7549 3.4316 -3.4698 14 6 10.0139 3.9913 -3.6218 15 6 11.0617 3.5998 -2.8022 16 6 10.8615 2.6499 -1.8272 17 6 9.5887 2.0708 -1.6673 18 6 9.3727 1.0894 -0.6727 19 1 8.3850 0.9480 -0.2592 20 6 10.4386 0.3014 -0.2239 21 7 11.5428 0.2359 -0.9223 22 14 10.2845 -0.6568 1.3721 23 1 8.9459 -0.4147 1.9677 24 1 10.4493 -2.1068 1.0969 25 1 11.3360 -0.2104 2.3209 26 6 4.2013 1.2217 -1.3999 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 4.0686 0.7501 2.0275 31 1 3.7712 -0.6425 0.9597 32 1 5.2892 0.2765 0.8216 33 1 4.5259 3.0150 0.9627 34 1 3.4341 3.4381 -0.4248 35 1 6.6193 1.9424 -3.2808 36 1 7.2592 0.8265 -2.0504 37 1 7.9462 3.7436 -4.1139 38 1 10.1800 4.7378 -4.3842 39 1 12.0384 4.0429 -2.9292 40 1 11.6790 2.3462 -1.1902 41 1 12.2815 -0.3106 -0.6114 42 1 3.5350 1.5625 -2.1922 43 1 4.6738 0.2661 -1.6276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819760506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:37 Heat of formation + Delta-G solvation = -62.534680 kcal Electronic energy + Delta-G solvation = -26482.114741 eV Core-core repulsion = 22686.650220 eV Total energy + Delta-G solvation = -3795.464522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43160 -39.74707 -38.14824 -36.95515 -36.55803 -33.61084 -32.03922 -31.39753 -29.44695 -28.17436 -27.74667 -26.44118 -25.89201 -24.86175 -23.52989 -20.92423 -20.43484 -19.56740 -18.50434 -17.68311 -17.21930 -17.12369 -16.69348 -16.33783 -15.56832 -15.17268 -15.00242 -14.43962 -14.17411 -13.91545 -13.70013 -13.50653 -13.22323 -13.13275 -12.84675 -12.63937 -12.56683 -12.23925 -11.93212 -11.85749 -11.71575 -11.55075 -11.16625 -11.10150 -11.03774 -10.98445 -10.76237 -10.66898 -10.62058 -10.37707 -9.47295 -9.36848 -9.23165 -9.15253 -8.53243 -7.30223 -7.28169 -6.72852 -4.33328 1.85486 2.30330 2.76829 2.91110 3.07736 3.12494 3.16833 3.27589 3.33216 3.83342 3.94155 4.39534 4.55959 4.64981 4.69909 4.79842 4.87781 5.05403 5.20565 5.26084 5.35751 5.55638 5.62188 5.65030 5.71193 5.76273 5.87663 6.00668 6.04303 6.11171 6.26583 6.31215 6.43067 6.52885 6.81216 7.09732 7.30935 7.43510 7.43907 7.65437 7.91770 7.98097 8.09044 8.14649 8.32596 8.65365 8.75275 8.92697 9.02679 10.21492 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.003867 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.291789 B = 7239.454969 C = 8698.199499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.484 3.516 4 O -0.502 6.502 5 C -0.102 4.102 6 C -0.125 4.125 7 C 0.125 3.875 8 N -0.654 5.654 9 C 0.549 3.451 10 O -0.511 6.511 11 C -0.062 4.062 12 C -0.184 4.184 13 C -0.080 4.080 14 C -0.239 4.239 15 C -0.106 4.106 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.795 5.795 22 Si 0.902 3.098 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.272 1.272 26 C 0.124 3.876 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.279 0.721 42 H 0.086 0.914 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.224 -5.024 1.510 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C 0.326 3.674 4 O -0.389 6.389 5 C -0.104 4.104 6 C -0.182 4.182 7 C 0.002 3.998 8 N -0.393 5.393 9 C 0.340 3.660 10 O -0.383 6.383 11 C -0.101 4.101 12 C -0.186 4.186 13 C -0.099 4.099 14 C -0.259 4.259 15 C -0.125 4.125 16 C -0.178 4.178 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.420 5.420 22 Si 0.727 3.273 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.197 1.197 26 C 0.000 4.000 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.648 -4.251 1.757 17.272 hybrid contribution -0.340 -0.363 0.665 0.830 sum -16.988 -4.614 2.421 17.770 Atomic orbital electron populations 1.23298 0.76289 1.03795 1.02600 1.86528 1.23357 1.33170 1.83780 1.23237 0.90883 0.81392 0.71920 1.90676 1.66785 1.36420 1.45013 1.22325 0.86997 1.00607 1.00478 1.21557 1.01909 0.98110 0.96651 1.22848 0.88340 0.92913 0.95723 1.49705 1.12282 1.36121 1.41222 1.20993 0.77693 0.83689 0.83593 1.90710 1.66060 1.28958 1.52617 1.20211 0.94141 1.00499 0.95268 1.19044 0.93462 1.04867 1.01225 1.20303 0.95577 0.96457 0.97534 1.20306 0.94186 1.06469 1.04909 1.20682 0.96648 0.98169 0.96973 1.21295 0.98488 0.97879 1.00165 1.17346 0.90589 0.89852 0.89536 1.19496 0.95604 1.15240 1.18226 0.90759 1.25876 0.94593 0.96225 0.97320 1.69826 1.04594 1.32353 1.35259 0.86360 0.79740 0.79069 0.82164 1.18465 1.20006 1.19734 1.22906 0.89817 0.94131 0.93191 0.91872 0.91813 0.87983 0.91396 0.90547 0.90008 0.89520 0.88867 0.90597 0.88448 0.89762 0.89631 0.89552 0.86517 0.91014 0.89594 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.32 10.14 -39.26 -0.40 -3.72 16 3 C 0.48 5.34 7.11 36.00 0.26 5.59 16 4 O -0.50 -6.69 15.70 -18.74 -0.29 -6.98 16 5 C -0.10 -1.12 1.47 -155.01 -0.23 -1.35 16 6 C -0.13 -1.29 9.19 37.16 0.34 -0.95 16 7 C 0.12 1.67 7.55 -8.51 -0.06 1.61 16 8 N -0.65 -10.10 3.49 -185.01 -0.65 -10.75 16 9 C 0.55 11.02 7.73 -10.98 -0.08 10.93 16 10 O -0.51 -12.63 16.81 5.56 0.09 -12.54 16 11 C -0.06 -1.22 5.01 -29.03 -0.15 -1.36 16 12 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 13 C -0.08 -1.88 9.66 -39.66 -0.38 -2.26 16 14 C -0.24 -5.63 10.05 -39.29 -0.39 -6.02 16 15 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 16 C -0.16 -4.27 8.68 -38.87 -0.34 -4.60 16 17 C 0.13 3.46 5.56 -106.82 -0.59 2.86 16 18 C -0.46 -11.90 8.15 -37.74 -0.31 -12.21 16 19 H 0.07 1.88 6.68 -52.48 -0.35 1.53 16 20 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 21 N -0.79 -20.39 10.97 55.55 0.61 -19.78 16 22 Si 0.90 18.60 29.59 -169.99 -5.03 13.57 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C 0.12 1.37 7.54 -8.37 -0.06 1.31 16 27 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 32 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 33 H 0.09 1.20 8.12 -51.93 -0.42 0.78 16 34 H 0.09 1.23 7.46 -51.93 -0.39 0.84 16 35 H 0.08 1.27 8.05 -51.92 -0.42 0.85 16 36 H 0.10 1.87 7.04 -51.93 -0.37 1.50 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 40 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 41 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 42 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.10 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -32.44 366.43 -8.05 -40.49 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.02 Total: 5.44 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.89 Total: -11.25 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: -0.04 Total: -30.52 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.60 Total: -23.24 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.44 -8.05 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819760506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.043 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds