Wall clock time and date at job start Tue Mar 31 2020 11:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99692 * 2 1 4 4 O 1.20818 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99730 * 180.02562 * 3 2 1 6 6 C 1.52995 * 113.28408 * 313.05990 * 5 3 2 7 7 C 1.53501 * 114.20567 * 179.97438 * 5 3 2 8 8 N 1.47066 * 87.98631 * 220.14578 * 7 5 3 9 9 C 1.34775 * 136.05691 * 207.08518 * 8 7 5 10 10 O 1.21278 * 120.00248 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.99826 * 179.97438 * 9 8 7 12 12 C 1.50702 * 109.46876 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.13298 * 265.00052 * 12 11 9 14 14 C 1.38610 * 120.24856 * 179.97438 * 13 12 11 15 15 C 1.38657 * 120.50115 * 0.02562 * 14 13 12 16 16 C 1.37594 * 120.25136 * 359.97438 * 15 14 13 17 17 C 1.40705 * 120.12024 * 85.26015 * 12 11 9 18 18 C 1.41391 * 120.24871 * 0.02562 * 17 12 11 19 19 H 1.08005 * 119.99677 * 334.27449 * 18 17 12 20 20 C 1.39944 * 120.00108 * 154.27693 * 18 17 12 21 21 N 1.30818 * 119.99816 * 343.65995 * 20 18 17 22 22 Si 1.86800 * 119.99967 * 163.66543 * 20 18 17 23 23 H 1.48491 * 109.47398 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47083 * 119.99778 * 22 20 18 25 25 H 1.48498 * 109.46937 * 239.99532 * 22 20 18 26 26 C 1.47069 * 87.88355 * 27.34358 * 8 7 5 27 27 H 1.08991 * 109.47217 * 300.00213 * 1 2 3 28 28 H 1.08997 * 109.47275 * 60.00911 * 1 2 3 29 29 H 1.09007 * 109.46659 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47431 * 286.93754 * 6 5 3 31 31 H 1.08997 * 109.47298 * 46.93698 * 6 5 3 32 32 H 1.09001 * 109.47838 * 166.93570 * 6 5 3 33 33 H 1.08995 * 113.46663 * 105.36730 * 7 5 3 34 34 H 1.08998 * 113.46636 * 334.92230 * 7 5 3 35 35 H 1.09008 * 109.46793 * 59.99921 * 11 9 8 36 36 H 1.08995 * 109.47048 * 299.99947 * 11 9 8 37 37 H 1.07995 * 119.87268 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.74859 * 180.02562 * 14 13 12 39 39 H 1.08003 * 119.87397 * 180.02562 * 15 14 13 40 40 H 1.07995 * 120.12994 * 179.97438 * 16 15 14 41 41 H 0.97001 * 119.99886 * 180.02562 * 21 20 18 42 42 H 1.08996 * 113.46771 * 87.44187 * 26 8 7 43 43 H 1.09004 * 113.46670 * 217.87844 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2208 0.3482 1.0258 7 6 4.1215 2.7060 -0.0011 8 7 5.1499 2.2512 -0.9490 9 6 6.4064 2.6196 -1.2682 10 8 6.9292 3.5516 -0.6948 11 6 7.1617 1.8734 -2.3378 12 6 8.5316 2.4797 -2.5011 13 6 8.7549 3.4316 -3.4698 14 6 10.0139 3.9913 -3.6218 15 6 11.0617 3.5998 -2.8022 16 6 10.8615 2.6499 -1.8272 17 6 9.5887 2.0708 -1.6673 18 6 9.3727 1.0894 -0.6727 19 1 8.3850 0.9480 -0.2592 20 6 10.4386 0.3014 -0.2239 21 7 11.5428 0.2359 -0.9223 22 14 10.2845 -0.6568 1.3721 23 1 8.9459 -0.4147 1.9677 24 1 10.4493 -2.1068 1.0969 25 1 11.3360 -0.2104 2.3209 26 6 4.2013 1.2217 -1.3999 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 4.0686 0.7501 2.0275 31 1 3.7712 -0.6425 0.9597 32 1 5.2892 0.2765 0.8216 33 1 4.5259 3.0150 0.9627 34 1 3.4341 3.4381 -0.4248 35 1 6.6193 1.9424 -3.2808 36 1 7.2592 0.8265 -2.0504 37 1 7.9462 3.7436 -4.1139 38 1 10.1800 4.7378 -4.3842 39 1 12.0384 4.0429 -2.9292 40 1 11.6790 2.3462 -1.1902 41 1 12.2815 -0.3106 -0.6114 42 1 3.5350 1.5625 -2.1922 43 1 4.6738 0.2661 -1.6276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819760506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:36 Heat of formation + Delta-G solvation = -80.879527 kcal Electronic energy + Delta-G solvation = -26482.910234 eV Core-core repulsion = 22686.650220 eV Total energy + Delta-G solvation = -3796.260014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.41611 -40.87496 -39.69962 -38.56548 -37.46224 -35.49024 -33.59468 -32.70463 -31.34014 -29.35613 -28.59828 -27.68099 -27.20118 -26.53627 -24.51638 -22.82112 -21.88867 -20.86462 -19.72732 -19.04147 -18.62876 -18.19450 -17.66460 -17.45573 -17.26316 -16.64545 -16.26638 -16.07780 -15.51897 -15.33733 -14.83451 -14.75694 -14.54924 -14.36445 -14.18804 -13.94463 -13.57177 -13.48979 -13.35483 -12.96412 -12.91063 -12.84817 -12.80700 -12.71981 -12.64625 -12.47824 -12.09533 -11.80294 -11.70426 -11.56254 -11.32139 -11.20856 -11.01904 -10.80945 -9.80436 -9.22641 -9.16628 -8.58407 -6.28263 0.97389 0.98758 1.11515 1.38115 1.46744 1.51396 1.54289 1.71836 2.03754 2.21731 2.79163 2.87359 3.38591 3.68168 3.74676 3.82616 3.99832 4.24892 4.33967 4.36555 4.38483 4.39369 4.43230 4.53312 4.58959 4.69410 4.71974 4.75514 4.78100 4.78972 4.84580 4.93311 5.07249 5.20587 5.21716 5.30825 5.37185 5.55176 5.77878 6.04315 6.17073 6.21886 6.42402 6.61523 6.65078 6.74429 7.00184 7.11650 7.25984 8.38491 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.003867 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.291789 B = 7239.454969 C = 8698.199499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.494 3.506 4 O -0.527 6.527 5 C -0.088 4.088 6 C -0.123 4.123 7 C 0.117 3.883 8 N -0.655 5.655 9 C 0.550 3.450 10 O -0.572 6.572 11 C -0.058 4.058 12 C -0.191 4.191 13 C -0.092 4.092 14 C -0.244 4.244 15 C -0.116 4.116 16 C -0.194 4.194 17 C 0.097 3.903 18 C -0.481 4.481 19 H 0.073 0.927 20 C 0.037 3.963 21 N -0.826 5.826 22 Si 0.971 3.029 23 H -0.258 1.258 24 H -0.259 1.259 25 H -0.272 1.272 26 C 0.124 3.876 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.286 0.714 42 H 0.109 0.891 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.649 -6.568 1.159 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.337 3.663 4 O -0.416 6.416 5 C -0.090 4.090 6 C -0.180 4.180 7 C -0.006 4.006 8 N -0.391 5.391 9 C 0.342 3.658 10 O -0.450 6.450 11 C -0.097 4.097 12 C -0.193 4.193 13 C -0.110 4.110 14 C -0.263 4.263 15 C -0.135 4.135 16 C -0.214 4.214 17 C 0.094 3.906 18 C -0.510 4.510 19 H 0.091 0.909 20 C -0.178 4.178 21 N -0.452 5.452 22 Si 0.792 3.208 23 H -0.182 1.182 24 H -0.183 1.183 25 H -0.197 1.197 26 C 0.002 3.998 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.131 -5.843 1.384 20.052 hybrid contribution 0.285 0.139 0.713 0.780 sum -18.846 -5.704 2.097 19.802 Atomic orbital electron populations 1.23612 0.74453 1.05895 1.02686 1.86510 1.25059 1.31879 1.83165 1.22990 0.90504 0.81541 0.71304 1.90679 1.67233 1.37371 1.46347 1.22109 0.87511 0.98692 1.00676 1.21563 1.00709 0.99114 0.96635 1.23001 0.87777 0.94906 0.94882 1.49543 1.11626 1.36728 1.41243 1.20830 0.78890 0.82909 0.83159 1.90679 1.67966 1.31614 1.54727 1.20192 0.92425 1.00082 0.97021 1.19523 0.94931 1.04501 1.00308 1.20739 0.96517 0.95986 0.97719 1.20709 0.93974 1.06655 1.04981 1.20953 0.98137 0.97754 0.96639 1.21310 0.98595 0.99842 1.01605 1.17750 0.91421 0.90696 0.90702 1.19648 0.96124 1.16053 1.19190 0.90927 1.26676 0.93949 0.96933 1.00192 1.69886 1.05368 1.33185 1.36796 0.85325 0.79551 0.78251 0.77657 1.18193 1.18324 1.19736 1.23235 0.88861 0.93873 0.93816 0.91940 0.91659 0.84924 0.90994 0.88414 0.91906 0.90566 0.88436 0.87153 0.88112 0.86670 0.86721 0.87676 0.88489 0.90359 0.87270 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.51 10.14 -51.41 -0.52 -6.04 16 3 C 0.49 9.69 7.11 71.23 0.51 10.20 16 4 O -0.53 -13.09 15.70 21.99 0.35 -12.74 16 5 C -0.09 -1.75 1.47 -52.51 -0.08 -1.83 16 6 C -0.12 -2.29 9.19 71.98 0.66 -1.63 16 7 C 0.12 3.05 7.55 83.18 0.63 3.67 16 8 N -0.65 -19.47 3.49 -857.63 -2.99 -22.47 16 9 C 0.55 21.98 7.73 87.66 0.68 22.65 16 10 O -0.57 -29.02 16.81 -3.02 -0.05 -29.07 16 11 C -0.06 -2.23 5.01 29.10 0.15 -2.09 16 12 C -0.19 -9.27 4.43 -19.40 -0.09 -9.35 16 13 C -0.09 -4.18 9.66 22.22 0.21 -3.97 16 14 C -0.24 -11.29 10.05 22.46 0.23 -11.06 16 15 C -0.12 -5.82 10.02 22.22 0.22 -5.59 16 16 C -0.19 -10.83 8.68 22.73 0.20 -10.64 16 17 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 18 C -0.48 -25.80 8.15 23.46 0.19 -25.61 16 19 H 0.07 3.78 6.68 -2.91 -0.02 3.76 16 20 C 0.04 1.88 5.16 85.26 0.44 2.32 16 21 N -0.83 -43.61 10.97 21.83 0.24 -43.37 16 22 Si 0.97 38.47 29.59 68.60 2.03 40.50 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 25 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 26 C 0.12 2.42 7.54 83.27 0.63 3.05 16 27 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.10 1.41 7.80 -2.39 -0.02 1.39 16 32 H 0.06 1.44 7.93 -2.39 -0.02 1.42 16 33 H 0.08 2.13 8.12 -2.39 -0.02 2.12 16 34 H 0.10 2.48 7.46 -2.39 -0.02 2.46 16 35 H 0.11 3.41 8.05 -2.38 -0.02 3.39 16 36 H 0.10 3.80 7.04 -2.39 -0.02 3.78 16 37 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.10 5.65 6.22 -2.91 -0.02 5.63 16 41 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 42 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 43 H 0.12 1.85 8.12 -2.39 -0.02 1.83 16 Total: -1.00 -73.22 366.43 5.72 -67.50 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.02 Total: 28.90 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 5.65 Total: -23.21 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -2.75 Total: -65.84 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.23 Total: -47.85 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -73.22 5.72 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819760506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.376 kcal (2) G-P(sol) polarization free energy of solvation -73.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds