Wall clock time and date at job start Tue Mar 31 2020 10:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.39546 * 2 1 4 4 C 1.54571 * 110.43692 * 237.44929 * 2 1 3 5 5 C 1.54500 * 102.14420 * 214.40839 * 4 2 1 6 6 C 1.53003 * 110.45917 * 134.23028 * 5 4 2 7 7 N 1.46502 * 110.36589 * 256.50400 * 5 4 2 8 8 C 1.34775 * 119.99659 * 176.85540 * 7 5 4 9 9 O 1.21553 * 120.00216 * 0.02562 * 8 7 5 10 10 C 1.47884 * 120.00155 * 180.02562 * 8 7 5 11 11 C 1.39921 * 120.02457 * 0.25213 * 10 8 7 12 12 C 1.38332 * 120.36032 * 180.23876 * 11 10 8 13 13 C 1.37747 * 120.40679 * 359.48259 * 12 11 10 14 14 C 1.40754 * 120.04528 * 0.28428 * 13 12 11 15 15 C 1.41436 * 120.17594 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00489 * 24.46066 * 15 14 13 17 17 C 1.39940 * 119.99382 * 204.45604 * 15 14 13 18 18 N 1.30819 * 120.00196 * 17.88738 * 17 15 14 19 19 Si 1.86805 * 119.99614 * 197.88860 * 17 15 14 20 20 H 1.48504 * 109.47043 * 90.00222 * 19 17 15 21 21 H 1.48500 * 109.46812 * 210.00213 * 19 17 15 22 22 H 1.48500 * 109.47199 * 329.99998 * 19 17 15 23 23 C 1.38993 * 120.02889 * 179.97438 * 10 8 7 24 24 C 1.51324 * 104.82478 * 15.34384 * 5 4 2 25 25 O 1.20827 * 125.09434 * 182.31365 * 24 5 4 26 26 O 1.34063 * 109.80986 * 2.31483 * 24 5 4 27 27 H 1.09000 * 109.46763 * 299.03048 * 1 2 3 28 28 H 1.08999 * 109.47312 * 59.02374 * 1 2 3 29 29 H 1.09000 * 109.47427 * 179.03228 * 1 2 3 30 30 H 1.08995 * 109.47645 * 180.97103 * 3 2 1 31 31 H 1.09004 * 109.47434 * 300.97203 * 3 2 1 32 32 H 1.09000 * 109.47304 * 60.97124 * 3 2 1 33 33 H 1.09003 * 110.87001 * 96.24931 * 4 2 1 34 34 H 1.09000 * 110.87097 * 332.56985 * 4 2 1 35 35 H 1.08997 * 109.46990 * 181.60265 * 6 5 4 36 36 H 1.09002 * 109.47037 * 301.59703 * 6 5 4 37 37 H 1.08997 * 109.47474 * 61.60148 * 6 5 4 38 38 H 0.97000 * 120.00529 * 356.86359 * 7 5 4 39 39 H 1.08000 * 119.82181 * 359.97438 * 11 10 8 40 40 H 1.07994 * 119.79291 * 179.76253 * 12 11 10 41 41 H 1.08006 * 119.97517 * 180.25684 * 13 12 11 42 42 H 0.97006 * 119.99932 * 180.02562 * 18 17 15 43 43 H 1.08005 * 120.20266 * 0.02562 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0632 1.4341 0.0000 4 6 2.0697 -0.7793 -1.2209 5 6 3.3509 -1.4285 -0.6516 6 6 3.4292 -2.9019 -1.0566 7 7 4.5381 -0.7085 -1.1189 8 6 5.7613 -1.0739 -0.6866 9 8 5.8794 -2.0011 0.0905 10 6 6.9598 -0.3469 -1.1577 11 6 6.8241 0.7239 -2.0482 12 6 7.9408 1.4057 -2.4972 13 6 9.1981 1.0455 -2.0649 14 6 9.3540 -0.0259 -1.1655 15 6 10.6438 -0.3984 -0.7203 16 1 11.4466 0.3240 -0.7259 17 6 10.8795 -1.7031 -0.2724 18 7 10.0434 -2.6612 -0.5795 19 14 12.3882 -2.0764 0.7640 20 1 12.0551 -1.9087 2.2015 21 1 12.8249 -3.4741 0.5169 22 1 13.4838 -1.1434 0.3976 23 6 8.2214 -0.7229 -0.7119 24 6 3.2149 -1.3015 0.8501 25 8 4.0418 -1.6592 1.6553 26 8 2.0394 -0.7327 1.1534 27 1 -0.3633 0.4987 0.8986 28 1 -0.3634 0.5289 -0.8811 29 1 -0.3634 -1.0275 -0.0174 30 1 3.1528 1.4166 -0.0174 31 1 1.6941 1.9590 -0.8811 32 1 1.7224 1.9484 0.8985 33 1 2.3092 -0.1009 -2.0397 34 1 1.3582 -1.5404 -1.5412 35 1 4.3231 -3.3507 -0.6235 36 1 2.5461 -3.4264 -0.6917 37 1 3.4742 -2.9782 -2.1430 38 1 4.4440 0.0312 -1.7392 39 1 5.8424 1.0169 -2.3901 40 1 7.8257 2.2283 -3.1874 41 1 10.0649 1.5853 -2.4168 42 1 10.2067 -3.5655 -0.2687 43 1 8.3306 -1.5462 -0.0214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820560136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:11 Heat of formation + Delta-G solvation = -119.681290 kcal Electronic energy + Delta-G solvation = -27162.013262 eV Core-core repulsion = 23364.070677 eV Total energy + Delta-G solvation = -3797.942585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73891 -40.63027 -38.99118 -38.74646 -36.52768 -35.62113 -34.40316 -32.99607 -31.41366 -31.11609 -28.46099 -28.04692 -27.22870 -25.25317 -24.53121 -22.85441 -22.50554 -21.65849 -20.30048 -19.53392 -18.40223 -17.91941 -17.71348 -17.06281 -16.92606 -16.45550 -16.20189 -15.82918 -15.54366 -15.22882 -15.06328 -14.69563 -14.55559 -14.32699 -14.23223 -13.81548 -13.57743 -13.48571 -13.37637 -13.08324 -13.04459 -12.93991 -12.82123 -12.70572 -12.55807 -12.52782 -12.19255 -12.09743 -11.87757 -11.52286 -11.50283 -11.36511 -11.09951 -10.62561 -10.14795 -9.49223 -9.39253 -8.68603 -6.39752 0.38042 0.84713 1.00115 1.33215 1.46010 1.47764 2.04114 2.12379 2.16326 2.20096 2.72118 2.86416 3.10084 3.48200 3.69087 3.72809 3.87096 4.02273 4.08448 4.42346 4.49253 4.55147 4.59589 4.64835 4.66352 4.76672 4.81255 4.89332 4.92092 4.93082 5.06968 5.13408 5.18702 5.20225 5.30481 5.32539 5.34988 5.50939 5.78467 5.85860 5.91327 6.04748 6.27909 6.42659 6.47211 6.65932 6.86401 6.94155 7.33188 8.27907 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.003663 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.637089 B = 7641.956088 C = 8357.193964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.091 3.909 3 C -0.171 4.171 4 C -0.133 4.133 5 C 0.120 3.880 6 C -0.154 4.154 7 N -0.699 5.699 8 C 0.552 3.448 9 O -0.552 6.552 10 C -0.138 4.138 11 C -0.195 4.195 12 C -0.094 4.094 13 C -0.217 4.217 14 C 0.067 3.933 15 C -0.499 4.499 16 H 0.084 0.916 17 C 0.029 3.971 18 N -0.824 5.824 19 Si 0.981 3.019 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.247 1.247 23 C -0.134 4.134 24 C 0.463 3.537 25 O -0.477 6.477 26 O -0.359 6.359 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.039 0.961 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.420 0.580 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.285 0.715 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.942 7.028 -6.881 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.056 3.944 3 C -0.228 4.228 4 C -0.170 4.170 5 C 0.032 3.968 6 C -0.212 4.212 7 N -0.358 5.358 8 C 0.341 3.659 9 O -0.430 6.430 10 C -0.141 4.141 11 C -0.215 4.215 12 C -0.111 4.111 13 C -0.237 4.237 14 C 0.065 3.935 15 C -0.528 4.528 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.450 5.450 19 Si 0.802 3.198 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.170 1.170 23 C -0.154 4.154 24 C 0.301 3.699 25 O -0.359 6.359 26 O -0.277 6.277 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.261 0.739 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.639 5.942 -5.728 22.228 hybrid contribution 1.323 -0.464 0.778 1.603 sum -19.316 5.478 -4.950 20.679 Atomic orbital electron populations 1.21941 0.87984 1.04468 1.05030 1.23616 0.97855 0.91736 0.81202 1.22377 1.00925 0.93920 1.05563 1.23571 0.93019 1.01985 0.98397 1.21713 0.88398 0.96437 0.90257 1.22088 1.03170 0.92136 1.03767 1.45680 1.03291 1.37193 1.49649 1.18895 0.84297 0.82991 0.79710 1.90787 1.86746 1.30462 1.34967 1.19781 0.92026 0.99576 1.02710 1.20875 0.99200 0.98263 1.03143 1.20944 0.91738 0.99271 0.99183 1.21419 0.97683 1.02491 1.02129 1.17935 0.93208 0.91929 0.90426 1.19878 0.96427 0.96842 1.39673 0.89774 1.26849 1.01213 0.95485 0.95080 1.69890 1.37235 1.02235 1.35598 0.85219 0.77692 0.78580 0.78355 1.19546 1.19290 1.17048 1.21427 0.91458 1.01353 1.01211 1.23987 0.79455 0.74069 0.92379 1.90793 1.40367 1.46231 1.58518 1.87083 1.34299 1.62847 1.43426 0.91499 0.86400 0.90786 0.93953 0.85913 0.91380 0.84244 0.84463 0.94207 0.89248 0.88381 0.73938 0.83962 0.83956 0.87347 0.90447 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.91 71.98 0.64 -0.43 16 2 C 0.09 1.38 1.24 -10.26 -0.01 1.37 16 3 C -0.17 -2.33 8.78 71.98 0.63 -1.70 16 4 C -0.13 -1.62 5.54 31.64 0.18 -1.44 16 5 C 0.12 3.18 0.96 3.57 0.00 3.18 16 6 C -0.15 -4.17 8.39 71.98 0.60 -3.56 16 7 N -0.70 -21.21 5.09 -425.88 -2.17 -23.37 16 8 C 0.55 24.80 7.19 86.80 0.62 25.43 16 9 O -0.55 -30.31 12.15 17.89 0.22 -30.09 16 10 C -0.14 -6.59 5.87 -20.13 -0.12 -6.71 16 11 C -0.20 -7.40 9.55 22.70 0.22 -7.18 16 12 C -0.09 -3.60 10.01 22.18 0.22 -3.37 16 13 C -0.22 -10.16 9.78 22.77 0.22 -9.94 16 14 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 15 C -0.50 -27.93 9.05 23.47 0.21 -27.71 16 16 H 0.08 4.43 7.91 -2.91 -0.02 4.41 16 17 C 0.03 1.55 5.14 85.26 0.44 1.99 16 18 N -0.82 -47.67 10.96 21.82 0.24 -47.43 16 19 Si 0.98 41.37 29.60 68.60 2.03 43.40 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 23 C -0.13 -7.68 8.24 23.01 0.19 -7.49 16 24 C 0.46 16.54 7.11 71.43 0.51 17.04 16 25 O -0.48 -23.27 15.50 29.06 0.45 -22.82 16 26 O -0.36 -10.08 10.48 -50.15 -0.53 -10.61 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 30 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.14 0.78 7.41 -2.39 -0.02 0.76 16 34 H 0.14 0.89 7.59 -2.39 -0.02 0.88 16 35 H 0.04 1.53 6.28 -2.39 -0.01 1.51 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.42 9.18 6.21 -92.71 -0.58 8.61 16 39 H 0.14 3.77 6.38 -2.91 -0.02 3.75 16 40 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 41 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 42 H 0.29 15.30 8.30 -92.70 -0.77 14.53 16 43 H 0.09 6.03 5.74 -2.91 -0.02 6.01 16 Total: -1.00 -85.96 353.41 5.15 -80.82 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.46 Total: 27.01 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 4.44 Total: -16.91 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.93 Total: -70.80 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: 0.14 Total: -63.52 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -85.96 5.15 -80.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820560136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.865 kcal (2) G-P(sol) polarization free energy of solvation -85.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds