Wall clock time and date at job start Tue Mar 31 2020 10:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.49045 * 2 1 4 4 C 1.54566 * 110.43687 * 122.48683 * 2 1 3 5 5 C 1.54489 * 102.14514 * 91.89508 * 4 2 1 6 6 C 1.52998 * 110.37251 * 134.29242 * 5 4 2 7 7 N 1.46504 * 110.36882 * 256.50408 * 5 4 2 8 8 C 1.34775 * 120.00054 * 178.45973 * 7 5 4 9 9 O 1.21587 * 120.00542 * 0.02562 * 8 7 5 10 10 C 1.47648 * 120.00034 * 180.02562 * 8 7 5 11 11 C 1.40005 * 119.89815 * 179.97438 * 10 8 7 12 12 C 1.36310 * 120.10786 * 180.02562 * 11 10 8 13 13 C 1.40893 * 119.89258 * 359.97438 * 12 11 10 14 14 C 1.41113 * 120.10248 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99816 * 334.72502 * 14 13 12 16 16 C 1.40224 * 119.99750 * 154.72621 * 14 13 12 17 17 N 1.30650 * 120.00113 * 334.30706 * 16 14 13 18 18 Si 1.86793 * 119.99843 * 154.30690 * 16 14 13 19 19 H 1.48503 * 109.47431 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47397 * 59.99832 * 18 16 14 21 21 H 1.48504 * 109.47028 * 299.99903 * 18 16 14 22 22 C 1.40887 * 119.79051 * 0.26991 * 13 12 11 23 23 C 1.36312 * 119.89016 * 359.46850 * 22 13 12 24 24 C 1.51330 * 104.92471 * 15.39564 * 5 4 2 25 25 O 1.20825 * 125.09515 * 182.23294 * 24 5 4 26 26 O 1.34295 * 109.67644 * 2.21628 * 24 5 4 27 27 H 1.08995 * 109.47554 * 297.51026 * 1 2 3 28 28 H 1.09007 * 109.47236 * 57.51372 * 1 2 3 29 29 H 1.09002 * 109.47020 * 177.51122 * 1 2 3 30 30 H 1.08998 * 109.47071 * 182.48836 * 3 2 1 31 31 H 1.09002 * 109.47107 * 302.49119 * 3 2 1 32 32 H 1.09002 * 109.47045 * 62.48542 * 3 2 1 33 33 H 1.08997 * 110.87020 * 333.73078 * 4 2 1 34 34 H 1.09004 * 111.04766 * 210.13429 * 4 2 1 35 35 H 1.09001 * 109.47883 * 181.54300 * 6 5 4 36 36 H 1.09006 * 109.46809 * 301.54014 * 6 5 4 37 37 H 1.09003 * 109.47381 * 61.53680 * 6 5 4 38 38 H 0.96998 * 119.99794 * 358.45945 * 7 5 4 39 39 H 1.08007 * 119.94628 * 359.97438 * 11 10 8 40 40 H 1.08006 * 120.05367 * 179.97438 * 12 11 10 41 41 H 0.96996 * 119.99852 * 354.24779 * 17 16 14 42 42 H 1.07996 * 120.05149 * 179.72607 * 22 13 12 43 43 H 1.08007 * 119.94334 * 180.27106 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0656 1.4332 0.0000 4 6 2.0697 -0.7779 1.2217 5 6 2.2300 -2.2054 0.6532 6 6 3.5822 -2.7930 1.0623 7 7 1.1395 -3.0655 1.1195 8 6 1.0724 -4.3487 0.7130 9 8 1.9171 -4.7928 -0.0403 10 6 -0.0270 -5.2153 1.1825 11 6 -0.0949 -6.5479 0.7584 12 6 -1.1083 -7.3515 1.1888 13 6 -2.0881 -6.8394 2.0622 14 6 -3.1388 -7.6676 2.5109 15 1 -3.4473 -8.5167 1.9192 16 6 -3.7821 -7.3881 3.7251 17 7 -3.1516 -6.7321 4.6626 18 14 -5.5407 -7.9536 4.0020 19 1 -5.9878 -7.5360 5.3552 20 1 -5.6080 -9.4331 3.8926 21 1 -6.4248 -7.3409 2.9782 22 6 -2.0183 -5.4963 2.4820 23 6 -0.9982 -4.7018 2.0505 24 6 2.1620 -2.0365 -0.8491 25 8 2.2105 -2.9378 -1.6524 26 8 2.0393 -0.7341 -1.1526 27 1 -0.3634 0.4746 0.9114 28 1 -0.3634 0.5520 -0.8669 29 1 -0.3633 -1.0267 -0.0446 30 1 3.1545 1.4141 -0.0446 31 1 1.6757 1.9668 -0.8668 32 1 1.7481 1.9397 0.9114 33 1 1.3495 -0.7644 2.0397 34 1 3.0309 -0.3792 1.5463 35 1 3.6914 -3.7882 0.6313 36 1 4.3831 -2.1494 0.6981 37 1 3.6355 -2.8598 2.1490 38 1 0.4658 -2.7113 1.7207 39 1 0.6564 -6.9395 0.0886 40 1 -1.1601 -8.3793 0.8608 41 1 -2.2134 -6.5113 4.5530 42 1 -2.7696 -5.0981 3.1479 43 1 -0.9414 -3.6733 2.3753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820569758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:20 Heat of formation + Delta-G solvation = -109.241368 kcal Electronic energy + Delta-G solvation = -26901.252278 eV Core-core repulsion = 23103.762402 eV Total energy + Delta-G solvation = -3797.489876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58288 -39.03811 -37.67269 -37.32875 -35.16857 -34.08345 -33.49992 -31.53332 -29.71421 -29.43319 -27.87755 -27.19634 -25.78902 -24.01089 -22.43478 -21.63936 -21.13806 -20.33791 -19.03015 -18.16605 -17.37755 -16.79477 -16.54057 -15.95251 -15.05927 -14.81291 -14.66552 -14.32362 -14.22551 -14.04860 -13.71808 -13.56612 -13.54788 -12.92693 -12.70754 -12.60807 -12.46812 -12.36575 -12.26747 -12.16727 -12.07776 -11.92049 -11.74270 -11.43448 -11.21066 -11.17928 -10.99592 -10.62541 -10.55083 -10.16658 -9.90161 -9.75041 -9.24146 -8.94076 -8.70553 -7.98583 -7.77226 -7.47678 -4.73151 2.08911 2.15465 2.81206 3.00418 3.04423 3.09778 3.22395 3.54543 3.66516 3.81284 3.93291 3.95803 4.23540 4.41540 4.48761 4.59222 4.94786 5.15681 5.22340 5.31520 5.36276 5.40480 5.41477 5.46344 5.52077 5.68735 5.73989 5.82116 5.86149 5.91459 6.14362 6.28105 6.56602 6.63773 6.78660 6.84473 6.88576 7.17071 7.39013 7.51396 7.53717 7.62130 7.67825 7.90941 8.04084 8.08479 8.48810 8.59450 8.98946 9.73113 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.003213 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.437194 B = 8713.842367 C = 9379.105093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 C -0.141 4.141 4 C -0.151 4.151 5 C 0.126 3.874 6 C -0.154 4.154 7 N -0.728 5.728 8 C 0.567 3.433 9 O -0.537 6.537 10 C -0.292 4.292 11 C -0.013 4.013 12 C -0.239 4.239 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.083 0.917 16 C 0.037 3.963 17 N -0.774 5.774 18 Si 1.067 2.933 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.230 4.230 23 C -0.044 4.044 24 C 0.469 3.531 25 O -0.408 6.408 26 O -0.346 6.346 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.303 0.697 42 H 0.108 0.892 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 15.011 -0.108 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 C -0.198 4.198 4 C -0.189 4.189 5 C 0.037 3.963 6 C -0.212 4.212 7 N -0.387 5.387 8 C 0.361 3.639 9 O -0.416 6.416 10 C -0.296 4.296 11 C -0.032 4.032 12 C -0.258 4.258 13 C 0.106 3.894 14 C -0.520 4.520 15 H 0.101 0.899 16 C -0.188 4.188 17 N -0.395 5.395 18 Si 0.889 3.111 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.197 1.197 22 C -0.250 4.250 23 C -0.063 4.063 24 C 0.304 3.696 25 O -0.285 6.285 26 O -0.264 6.264 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.817 14.416 -0.132 15.200 hybrid contribution 0.932 0.178 -0.655 1.153 sum 5.749 14.593 -0.786 15.705 Atomic orbital electron populations 1.22292 0.92651 1.03920 1.03740 1.23018 0.94725 0.92902 0.82615 1.21861 1.02160 0.92356 1.03456 1.23399 1.04341 0.92912 0.98215 1.21385 0.91597 0.91327 0.92021 1.22102 0.92742 1.04020 1.02372 1.45968 1.28580 1.11571 1.52542 1.18639 0.85486 0.80432 0.79342 1.90715 1.41288 1.73747 1.35820 1.18797 1.01679 0.95824 1.13341 1.20397 0.95969 0.91984 0.94845 1.20678 0.97880 0.98801 1.08441 1.17816 0.90175 0.91583 0.89834 1.20884 1.13478 1.11626 1.06060 0.89891 1.27268 1.06675 0.92859 0.92002 1.70397 1.14073 1.22878 1.32194 0.83601 0.72475 0.77380 0.77613 1.19569 1.19782 1.19667 1.20811 1.01082 0.94360 1.08710 1.20384 0.94016 0.96852 0.95019 1.23408 0.73506 0.81363 0.91285 1.90800 1.41207 1.39808 1.56721 1.87133 1.77571 1.21270 1.40448 0.89980 0.90890 0.91401 0.91203 0.91087 0.89995 0.87911 0.87807 0.88912 0.91850 0.91094 0.76322 0.87864 0.88287 0.88265 0.87404 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.79 37.16 0.33 -1.20 16 2 C 0.10 1.00 1.24 -89.80 -0.11 0.89 16 3 C -0.14 -0.91 8.91 37.16 0.33 -0.58 16 4 C -0.15 -1.34 5.53 -25.13 -0.14 -1.48 16 5 C 0.13 1.75 0.96 -131.88 -0.13 1.63 16 6 C -0.15 -2.10 8.36 37.16 0.31 -1.79 16 7 N -0.73 -11.59 5.09 -48.65 -0.25 -11.84 16 8 C 0.57 11.84 7.18 -12.42 -0.09 11.75 16 9 O -0.54 -12.78 12.18 -17.00 -0.21 -12.98 16 10 C -0.29 -6.54 5.89 -104.73 -0.62 -7.15 16 11 C -0.01 -0.30 9.52 -39.61 -0.38 -0.68 16 12 C -0.24 -5.77 9.73 -39.27 -0.38 -6.16 16 13 C 0.11 2.74 5.30 -106.80 -0.57 2.18 16 14 C -0.49 -12.22 8.98 -37.75 -0.34 -12.56 16 15 H 0.08 1.99 7.97 -52.49 -0.42 1.57 16 16 C 0.04 0.85 4.93 -17.31 -0.09 0.77 16 17 N -0.77 -18.82 12.31 55.56 0.68 -18.13 16 18 Si 1.07 19.69 30.01 -169.99 -5.10 14.59 16 19 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 20 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 22 C -0.23 -5.43 7.89 -39.27 -0.31 -5.74 16 23 C -0.04 -0.92 9.47 -39.61 -0.38 -1.30 16 24 C 0.47 8.08 7.11 36.32 0.26 8.33 16 25 O -0.41 -8.98 15.64 -26.02 -0.41 -9.38 16 26 O -0.35 -4.97 10.49 -39.07 -0.41 -5.38 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.72 7.41 -51.93 -0.38 0.34 16 34 H 0.10 0.70 7.61 -51.93 -0.39 0.31 16 35 H 0.09 1.62 6.17 -51.93 -0.32 1.30 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.40 5.39 6.20 -40.82 -0.25 5.13 16 39 H 0.10 2.39 7.63 -52.48 -0.40 1.99 16 40 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 41 H 0.30 7.57 6.71 -40.82 -0.27 7.30 16 42 H 0.11 2.56 6.49 -52.49 -0.34 2.22 16 43 H 0.09 1.54 6.37 -52.48 -0.33 1.20 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -31.39 352.47 -8.38 -39.77 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.72 Total: 11.14 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.29 Total: -13.09 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.44 Total: -29.97 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.02 Total: -27.74 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.10 Total: 14.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.39 -8.38 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820569758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.469 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds