Wall clock time and date at job start Tue Mar 31 2020 10:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.49045 * 2 1 4 4 C 1.54566 * 110.43687 * 122.48683 * 2 1 3 5 5 C 1.54489 * 102.14514 * 91.89508 * 4 2 1 6 6 C 1.52998 * 110.37251 * 134.29242 * 5 4 2 7 7 N 1.46504 * 110.36882 * 256.50408 * 5 4 2 8 8 C 1.34775 * 120.00054 * 178.45973 * 7 5 4 9 9 O 1.21587 * 120.00542 * 0.02562 * 8 7 5 10 10 C 1.47648 * 120.00034 * 180.02562 * 8 7 5 11 11 C 1.40005 * 119.89815 * 179.97438 * 10 8 7 12 12 C 1.36310 * 120.10786 * 180.02562 * 11 10 8 13 13 C 1.40893 * 119.89258 * 359.97438 * 12 11 10 14 14 C 1.41113 * 120.10248 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99816 * 334.72502 * 14 13 12 16 16 C 1.40224 * 119.99750 * 154.72621 * 14 13 12 17 17 N 1.30650 * 120.00113 * 334.30706 * 16 14 13 18 18 Si 1.86793 * 119.99843 * 154.30690 * 16 14 13 19 19 H 1.48503 * 109.47431 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47397 * 59.99832 * 18 16 14 21 21 H 1.48504 * 109.47028 * 299.99903 * 18 16 14 22 22 C 1.40887 * 119.79051 * 0.26991 * 13 12 11 23 23 C 1.36312 * 119.89016 * 359.46850 * 22 13 12 24 24 C 1.51330 * 104.92471 * 15.39564 * 5 4 2 25 25 O 1.20825 * 125.09515 * 182.23294 * 24 5 4 26 26 O 1.34295 * 109.67644 * 2.21628 * 24 5 4 27 27 H 1.08995 * 109.47554 * 297.51026 * 1 2 3 28 28 H 1.09007 * 109.47236 * 57.51372 * 1 2 3 29 29 H 1.09002 * 109.47020 * 177.51122 * 1 2 3 30 30 H 1.08998 * 109.47071 * 182.48836 * 3 2 1 31 31 H 1.09002 * 109.47107 * 302.49119 * 3 2 1 32 32 H 1.09002 * 109.47045 * 62.48542 * 3 2 1 33 33 H 1.08997 * 110.87020 * 333.73078 * 4 2 1 34 34 H 1.09004 * 111.04766 * 210.13429 * 4 2 1 35 35 H 1.09001 * 109.47883 * 181.54300 * 6 5 4 36 36 H 1.09006 * 109.46809 * 301.54014 * 6 5 4 37 37 H 1.09003 * 109.47381 * 61.53680 * 6 5 4 38 38 H 0.96998 * 119.99794 * 358.45945 * 7 5 4 39 39 H 1.08007 * 119.94628 * 359.97438 * 11 10 8 40 40 H 1.08006 * 120.05367 * 179.97438 * 12 11 10 41 41 H 0.96996 * 119.99852 * 354.24779 * 17 16 14 42 42 H 1.07996 * 120.05149 * 179.72607 * 22 13 12 43 43 H 1.08007 * 119.94334 * 180.27106 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0656 1.4332 0.0000 4 6 2.0697 -0.7779 1.2217 5 6 2.2300 -2.2054 0.6532 6 6 3.5822 -2.7930 1.0623 7 7 1.1395 -3.0655 1.1195 8 6 1.0724 -4.3487 0.7130 9 8 1.9171 -4.7928 -0.0403 10 6 -0.0270 -5.2153 1.1825 11 6 -0.0949 -6.5479 0.7584 12 6 -1.1083 -7.3515 1.1888 13 6 -2.0881 -6.8394 2.0622 14 6 -3.1388 -7.6676 2.5109 15 1 -3.4473 -8.5167 1.9192 16 6 -3.7821 -7.3881 3.7251 17 7 -3.1516 -6.7321 4.6626 18 14 -5.5407 -7.9536 4.0020 19 1 -5.9878 -7.5360 5.3552 20 1 -5.6080 -9.4331 3.8926 21 1 -6.4248 -7.3409 2.9782 22 6 -2.0183 -5.4963 2.4820 23 6 -0.9982 -4.7018 2.0505 24 6 2.1620 -2.0365 -0.8491 25 8 2.2105 -2.9378 -1.6524 26 8 2.0393 -0.7341 -1.1526 27 1 -0.3634 0.4746 0.9114 28 1 -0.3634 0.5520 -0.8669 29 1 -0.3633 -1.0267 -0.0446 30 1 3.1545 1.4141 -0.0446 31 1 1.6757 1.9668 -0.8668 32 1 1.7481 1.9397 0.9114 33 1 1.3495 -0.7644 2.0397 34 1 3.0309 -0.3792 1.5463 35 1 3.6914 -3.7882 0.6313 36 1 4.3831 -2.1494 0.6981 37 1 3.6355 -2.8598 2.1490 38 1 0.4658 -2.7113 1.7207 39 1 0.6564 -6.9395 0.0886 40 1 -1.1601 -8.3793 0.8608 41 1 -2.2134 -6.5113 4.5530 42 1 -2.7696 -5.0981 3.1479 43 1 -0.9414 -3.6733 2.3753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820569758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:19 Heat of formation + Delta-G solvation = -127.439123 kcal Electronic energy + Delta-G solvation = -26902.041392 eV Core-core repulsion = 23103.762402 eV Total energy + Delta-G solvation = -3798.278990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.71236 -40.63909 -39.19571 -38.86044 -36.50445 -35.88119 -34.41549 -32.96673 -31.40834 -31.20746 -28.49769 -28.05561 -27.55175 -25.13899 -24.10437 -23.03220 -22.50863 -21.88774 -20.30139 -19.95055 -18.81885 -18.03420 -17.86273 -17.05465 -16.53170 -16.36950 -16.00917 -15.80721 -15.60393 -15.40828 -15.23196 -14.73436 -14.47863 -14.29420 -14.20006 -13.95473 -13.81859 -13.53222 -13.34950 -13.19347 -13.09718 -13.03764 -12.89555 -12.73742 -12.64441 -12.56293 -12.11267 -11.97892 -11.66305 -11.55519 -11.52892 -11.38175 -10.98408 -10.60209 -10.12717 -9.82754 -9.63208 -9.31903 -6.62572 0.34300 0.83670 0.94538 1.51502 1.54759 1.82203 2.02901 2.12118 2.24259 2.28357 2.65339 2.85244 3.08979 3.46586 3.49510 3.69428 3.86592 4.02915 4.13716 4.18966 4.26724 4.52641 4.54599 4.61954 4.65013 4.71346 4.73547 4.77724 4.88696 4.90753 4.93017 5.03940 5.14707 5.15166 5.29803 5.30526 5.38797 5.58003 5.64633 5.65592 5.76441 5.80319 6.06610 6.21694 6.40560 6.56284 6.64705 6.73780 7.39750 7.86942 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.003213 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.437194 B = 8713.842367 C = 9379.105093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 C -0.137 4.137 4 C -0.136 4.136 5 C 0.121 3.879 6 C -0.153 4.153 7 N -0.709 5.709 8 C 0.565 3.435 9 O -0.569 6.569 10 C -0.297 4.297 11 C -0.027 4.027 12 C -0.254 4.254 13 C 0.086 3.914 14 C -0.525 4.525 15 H 0.079 0.921 16 C 0.008 3.992 17 N -0.787 5.787 18 Si 1.118 2.882 19 H -0.266 1.266 20 H -0.259 1.259 21 H -0.262 1.262 22 C -0.243 4.243 23 C -0.031 4.031 24 C 0.465 3.535 25 O -0.474 6.474 26 O -0.360 6.360 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.414 0.586 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.291 0.709 42 H 0.106 0.894 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 18.328 1.946 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.058 3.942 3 C -0.194 4.194 4 C -0.173 4.173 5 C 0.033 3.967 6 C -0.211 4.211 7 N -0.367 5.367 8 C 0.358 3.642 9 O -0.450 6.450 10 C -0.302 4.302 11 C -0.046 4.046 12 C -0.274 4.274 13 C 0.083 3.917 14 C -0.551 4.551 15 H 0.098 0.902 16 C -0.212 4.212 17 N -0.408 5.408 18 Si 0.934 3.066 19 H -0.190 1.190 20 H -0.184 1.184 21 H -0.187 1.187 22 C -0.262 4.262 23 C -0.050 4.050 24 C 0.303 3.697 25 O -0.356 6.356 26 O -0.277 6.277 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.254 0.746 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.440 17.805 1.948 18.453 hybrid contribution 1.185 -0.715 -1.384 1.957 sum 5.625 17.090 0.564 18.001 Atomic orbital electron populations 1.22378 0.92338 1.02483 1.05630 1.23561 0.95155 0.94197 0.81273 1.21935 1.02426 0.89939 1.05108 1.23562 1.07107 0.88355 0.98314 1.21669 0.90885 0.93942 0.90217 1.22091 0.93394 1.02028 1.03575 1.45708 1.29360 1.10040 1.51594 1.18477 0.84622 0.81989 0.79095 1.90721 1.42253 1.74884 1.37126 1.19135 1.02416 0.95693 1.12941 1.20518 0.95838 0.93068 0.95156 1.20786 0.98335 0.99147 1.09102 1.18137 0.90539 0.92695 0.90338 1.21094 1.14622 1.12278 1.07129 0.90249 1.28593 1.09704 0.91866 0.91028 1.70501 1.13435 1.24226 1.32615 0.82984 0.68000 0.77798 0.77839 1.19032 1.18351 1.18672 1.20862 1.01981 0.94111 1.09231 1.20691 0.92260 0.98610 0.93394 1.24019 0.71712 0.81631 0.92332 1.90759 1.44190 1.42086 1.58587 1.87121 1.77094 1.20195 1.43323 0.86366 0.91048 0.94211 0.90715 0.91333 0.86627 0.84852 0.84477 0.93404 0.89389 0.88746 0.74603 0.88386 0.88213 0.89669 0.87650 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 8.79 71.98 0.63 -1.91 16 2 C 0.09 1.46 1.24 -10.26 -0.01 1.44 16 3 C -0.14 -1.14 8.91 71.98 0.64 -0.49 16 4 C -0.14 -1.75 5.53 31.63 0.17 -1.58 16 5 C 0.12 3.12 0.96 3.56 0.00 3.12 16 6 C -0.15 -3.89 8.36 71.98 0.60 -3.29 16 7 N -0.71 -21.25 5.09 -426.11 -2.17 -23.42 16 8 C 0.57 23.69 7.18 86.73 0.62 24.31 16 9 O -0.57 -28.04 12.18 17.32 0.21 -27.83 16 10 C -0.30 -13.39 5.89 -19.93 -0.12 -13.51 16 11 C -0.03 -1.30 9.52 22.25 0.21 -1.09 16 12 C -0.25 -12.82 9.73 22.47 0.22 -12.60 16 13 C 0.09 4.43 5.30 -21.28 -0.11 4.32 16 14 C -0.53 -26.56 8.98 23.46 0.21 -26.35 16 15 H 0.08 3.93 7.97 -2.91 -0.02 3.91 16 16 C 0.01 0.38 4.93 85.35 0.42 0.80 16 17 N -0.79 -38.32 12.31 21.87 0.27 -38.05 16 18 Si 1.12 38.91 30.01 68.60 2.06 40.97 16 19 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 20 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 21 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 22 C -0.24 -11.45 7.89 22.47 0.18 -11.27 16 23 C -0.03 -1.27 9.47 22.25 0.21 -1.06 16 24 C 0.46 15.95 7.11 71.44 0.51 16.46 16 25 O -0.47 -21.83 15.64 28.92 0.45 -21.38 16 26 O -0.36 -9.89 10.49 -52.39 -0.55 -10.44 16 27 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.04 0.82 8.04 -2.39 -0.02 0.80 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.13 0.99 7.41 -2.39 -0.02 0.97 16 34 H 0.14 0.97 7.61 -2.38 -0.02 0.95 16 35 H 0.05 1.69 6.17 -2.39 -0.01 1.67 16 36 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.41 9.71 6.20 -92.71 -0.57 9.14 16 39 H 0.10 4.81 7.63 -2.91 -0.02 4.78 16 40 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 41 H 0.29 14.71 6.71 -92.71 -0.62 14.09 16 42 H 0.11 4.99 6.49 -2.91 -0.02 4.97 16 43 H 0.13 4.18 6.37 -2.91 -0.02 4.16 16 Total: -1.00 -74.85 352.47 5.28 -69.57 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.61 Total: 33.27 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.39 Total: -22.69 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -1.90 Total: -61.47 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: 0.11 Total: -59.64 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.06 Total: 40.97 kcal Total: -74.85 5.28 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820569758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.869 kcal (2) G-P(sol) polarization free energy of solvation -74.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds