Wall clock time and date at job start Tue Mar 31 2020 12:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00270 * 2 1 4 4 H 1.08993 * 109.86732 * 358.99319 * 3 2 1 5 5 O 1.43741 * 110.00367 * 237.90313 * 3 2 1 6 6 C 1.44381 * 106.97557 * 213.99044 * 5 3 2 7 7 C 1.55341 * 103.50103 * 40.09756 * 6 5 3 8 8 C 1.54104 * 109.88029 * 119.99793 * 3 2 1 9 9 H 1.09002 * 110.48535 * 2.79745 * 8 3 2 10 10 N 1.46495 * 110.48631 * 240.28468 * 8 3 2 11 11 C 1.34777 * 119.99723 * 156.84594 * 10 8 3 12 12 O 1.21280 * 120.00464 * 359.97438 * 11 10 8 13 13 C 1.50707 * 119.99764 * 179.97438 * 11 10 8 14 14 C 1.50704 * 109.46888 * 179.97438 * 13 11 10 15 15 C 1.38319 * 119.96323 * 270.02155 * 14 13 11 16 16 C 1.38286 * 120.13784 * 180.02562 * 15 14 13 17 17 C 1.38125 * 120.06529 * 359.74848 * 16 15 14 18 18 C 1.38860 * 119.92838 * 0.48341 * 17 16 15 19 19 O 1.35749 * 120.06624 * 179.79361 * 18 17 16 20 20 C 1.34833 * 117.00151 * 5.23519 * 19 18 17 21 21 H 1.07995 * 120.00021 * 354.92756 * 20 19 18 22 22 C 1.38660 * 120.00010 * 174.92297 * 20 19 18 23 23 N 1.31553 * 119.99927 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00099 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46747 * 269.99998 * 24 22 20 26 26 H 1.48497 * 109.47192 * 29.99915 * 24 22 20 27 27 H 1.48493 * 109.47045 * 149.99984 * 24 22 20 28 28 C 1.38075 * 119.96627 * 90.00212 * 14 13 11 29 29 H 1.08009 * 120.00039 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00183 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00137 * 179.97438 * 2 1 3 32 32 H 1.08996 * 110.61676 * 158.56429 * 6 5 3 33 33 H 1.08996 * 110.61894 * 281.40324 * 6 5 3 34 34 H 1.09002 * 111.00640 * 204.79739 * 7 6 5 35 35 H 1.08993 * 110.96368 * 81.07555 * 7 6 5 36 36 H 0.96996 * 120.00316 * 336.83571 * 10 8 3 37 37 H 1.09006 * 109.46461 * 60.00228 * 13 11 10 38 38 H 1.08993 * 109.47092 * 300.00302 * 13 11 10 39 39 H 1.07998 * 119.93779 * 0.03022 * 15 14 13 40 40 H 1.07995 * 119.96753 * 180.02562 * 16 15 14 41 41 H 1.07994 * 120.03473 * 180.25972 * 17 16 15 42 42 H 0.96999 * 120.00146 * 179.97438 * 23 22 20 43 43 H 1.08006 * 120.03104 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3612 2.1384 -0.0180 5 8 2.9309 1.3720 -1.1442 6 6 4.1094 2.1004 -0.7378 7 6 4.3862 1.5713 0.6963 8 6 2.9530 1.3966 1.2551 9 1 2.8812 0.4804 1.8412 10 7 2.5748 2.5550 2.0682 11 6 2.8663 2.5788 3.3838 12 8 3.4412 1.6411 3.8947 13 6 2.4777 3.7708 4.2202 14 6 2.9139 3.5480 5.6454 15 6 2.0592 2.9314 6.5412 16 6 2.4555 2.7256 7.8499 17 6 3.7090 3.1309 8.2652 18 6 4.5675 3.7546 7.3695 19 8 5.7984 4.1578 7.7757 20 6 6.1681 3.8270 9.0295 21 1 5.4658 3.3381 9.6883 22 6 7.4501 4.1144 9.4729 23 7 7.8110 3.7912 10.6960 24 14 8.6647 4.9606 8.3335 25 1 9.4251 3.9369 7.5725 26 1 7.9281 5.8355 7.3865 27 1 9.6065 5.7818 9.1359 28 6 4.1666 3.9592 6.0556 29 1 -0.5401 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 4.9469 1.8745 -1.3979 33 1 3.9121 3.1723 -0.7231 34 1 4.9452 2.3017 1.2811 35 1 4.9106 0.6163 0.6651 36 1 2.1148 3.3049 1.6597 37 1 1.3958 3.9001 4.1877 38 1 2.9625 4.6642 3.8269 39 1 1.0802 2.6098 6.2179 40 1 1.7861 2.2435 8.5469 41 1 4.0196 2.9662 9.2863 42 1 8.7079 3.9919 11.0061 43 1 4.8335 4.4407 5.3556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834142584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:54 Heat of formation + Delta-G solvation = -58.106401 kcal Electronic energy + Delta-G solvation = -25588.254494 eV Core-core repulsion = 21792.981997 eV Total energy + Delta-G solvation = -3795.272497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62904 -39.44061 -38.70724 -36.63508 -34.78039 -34.16071 -32.46683 -32.22824 -30.95384 -29.43347 -28.48934 -26.89247 -25.14069 -23.32073 -22.47543 -21.68767 -20.89021 -20.65565 -19.88501 -17.76249 -17.52197 -17.04013 -16.78806 -16.71891 -15.64643 -15.39145 -15.15432 -15.02976 -14.64401 -14.33086 -13.88483 -13.84490 -13.65276 -13.48277 -13.40609 -12.88983 -12.61860 -12.51755 -12.27609 -12.15319 -11.77209 -11.62315 -11.53450 -11.41653 -11.29616 -10.82933 -10.75257 -10.74473 -10.25240 -10.14161 -9.98406 -9.82017 -9.36460 -9.23043 -8.84488 -8.13269 -7.33564 -6.38254 -4.04950 1.74690 2.01673 2.30630 2.64116 2.97714 3.23606 3.27890 3.41612 3.66054 4.18675 4.21292 4.26323 4.46382 4.48550 4.64769 4.72800 4.79466 4.87218 4.90175 5.02249 5.11873 5.16916 5.29780 5.33711 5.40500 5.51528 5.54834 5.66821 5.68271 5.70263 5.85585 6.13755 6.15420 6.16914 6.24708 6.27033 6.49541 6.54602 6.80609 7.11494 7.22842 7.29643 7.34407 7.63133 7.83776 8.07369 8.19404 8.97280 9.60135 10.69656 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002768 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.488058 B =10112.826770 C =11170.116026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.154 4.154 3 C 0.101 3.899 4 H 0.077 0.923 5 O -0.366 6.366 6 C 0.044 3.956 7 C -0.166 4.166 8 C 0.120 3.880 9 H 0.107 0.893 10 N -0.732 5.732 11 C 0.515 3.485 12 O -0.513 6.513 13 C -0.093 4.093 14 C -0.036 4.036 15 C -0.188 4.188 16 C -0.076 4.076 17 C -0.217 4.217 18 C 0.160 3.840 19 O -0.219 6.219 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.881 5.881 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.260 1.260 27 H -0.283 1.283 28 C -0.174 4.174 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.398 0.602 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.279 0.721 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 -1.888 -22.237 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.043 3.957 4 H 0.094 0.906 5 O -0.285 6.285 6 C -0.032 4.032 7 C -0.204 4.204 8 C 0.014 3.986 9 H 0.125 0.875 10 N -0.387 5.387 11 C 0.301 3.699 12 O -0.386 6.386 13 C -0.133 4.133 14 C -0.037 4.037 15 C -0.207 4.207 16 C -0.094 4.094 17 C -0.236 4.236 18 C 0.108 3.892 19 O -0.125 6.125 20 C -0.464 4.464 21 H 0.123 0.877 22 C -0.140 4.140 23 N -0.520 5.520 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.184 1.184 27 H -0.208 1.208 28 C -0.193 4.193 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.233 0.767 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.821 -2.537 -21.985 25.576 hybrid contribution 0.432 0.663 -0.199 0.816 sum -12.390 -1.874 -22.184 25.478 Atomic orbital electron populations 1.23903 0.95604 1.02398 0.98717 1.22788 0.95835 0.97516 1.01124 1.22040 0.92077 0.96405 0.85159 0.90564 1.88962 1.30536 1.76382 1.32620 1.23687 0.88201 0.95937 0.95382 1.23626 0.97062 1.03416 0.96332 1.22231 0.93163 0.91250 0.91935 0.87534 1.46105 1.62377 1.21033 1.09164 1.20813 0.78601 0.89042 0.81415 1.90777 1.39340 1.36861 1.71648 1.20594 1.02984 0.96653 0.93069 1.18643 0.93813 0.98772 0.92455 1.20414 0.99749 1.06431 0.94080 1.20741 0.95412 0.97915 0.95347 1.21303 0.95048 1.06039 1.01250 1.18999 0.85671 0.92167 0.92325 1.83564 1.27974 1.67997 1.32942 1.20764 0.99438 1.40240 0.85953 0.87651 1.24454 0.96657 0.96730 0.96171 1.69645 1.20568 1.45803 1.15944 0.86184 0.80217 0.79998 0.80512 1.19914 1.18418 1.20821 1.19924 0.96693 1.08779 0.93945 0.88335 0.87639 0.86424 0.88577 0.91928 0.89282 0.89444 0.76715 0.88231 0.88212 0.87743 0.87165 0.84980 0.91110 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 14.32 29.02 0.42 -0.73 16 2 C -0.15 -1.24 8.95 -36.02 -0.32 -1.57 16 3 C 0.10 0.84 3.57 -27.30 -0.10 0.74 16 4 H 0.08 0.53 7.28 -51.93 -0.38 0.15 16 5 O -0.37 -3.50 11.18 -35.23 -0.39 -3.89 16 6 C 0.04 0.34 7.73 38.40 0.30 0.64 16 7 C -0.17 -1.51 6.91 -24.53 -0.17 -1.68 16 8 C 0.12 1.14 2.98 -66.40 -0.20 0.94 16 9 H 0.11 1.23 7.16 -51.93 -0.37 0.86 16 10 N -0.73 -6.65 5.09 -52.32 -0.27 -6.92 16 11 C 0.51 6.72 7.82 -10.98 -0.09 6.63 16 12 O -0.51 -9.34 15.71 5.56 0.09 -9.25 16 13 C -0.09 -1.10 5.83 -29.03 -0.17 -1.27 16 14 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.19 -3.24 9.70 -39.53 -0.38 -3.63 16 16 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 17 C -0.22 -4.86 9.17 -39.39 -0.36 -5.22 16 18 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 19 O -0.22 -5.94 8.59 0.04 0.00 -5.94 16 20 C -0.39 -11.18 9.95 30.89 0.31 -10.87 16 21 H 0.11 3.10 5.43 -52.49 -0.29 2.81 16 22 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 23 N -0.88 -25.87 13.96 55.48 0.77 -25.09 16 24 Si 0.91 22.05 28.62 -169.99 -4.86 17.19 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.26 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C -0.17 -3.55 9.65 -39.40 -0.38 -3.93 16 29 H 0.10 0.57 7.85 -52.48 -0.41 0.16 16 30 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 2.34 8.31 -40.82 -0.34 2.00 16 37 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 3.08 5.64 -52.49 -0.30 2.78 16 42 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.11 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -34.05 366.51 -7.36 -41.41 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.86 Total: 4.56 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.36 Total: -17.59 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.51 Total: -32.01 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.31 Total: -19.08 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.05 -7.36 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834142584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.699 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds