Wall clock time and date at job start Tue Mar 31 2020 12:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00270 * 2 1 4 4 H 1.08993 * 109.86732 * 358.99319 * 3 2 1 5 5 O 1.43741 * 110.00367 * 237.90313 * 3 2 1 6 6 C 1.44381 * 106.97557 * 213.99044 * 5 3 2 7 7 C 1.55341 * 103.50103 * 40.09756 * 6 5 3 8 8 C 1.54104 * 109.88029 * 119.99793 * 3 2 1 9 9 H 1.09002 * 110.48535 * 2.79745 * 8 3 2 10 10 N 1.46495 * 110.48631 * 240.28468 * 8 3 2 11 11 C 1.34777 * 119.99723 * 156.84594 * 10 8 3 12 12 O 1.21280 * 120.00464 * 359.97438 * 11 10 8 13 13 C 1.50707 * 119.99764 * 179.97438 * 11 10 8 14 14 C 1.50704 * 109.46888 * 179.97438 * 13 11 10 15 15 C 1.38319 * 119.96323 * 270.02155 * 14 13 11 16 16 C 1.38286 * 120.13784 * 180.02562 * 15 14 13 17 17 C 1.38125 * 120.06529 * 359.74848 * 16 15 14 18 18 C 1.38860 * 119.92838 * 0.48341 * 17 16 15 19 19 O 1.35749 * 120.06624 * 179.79361 * 18 17 16 20 20 C 1.34833 * 117.00151 * 5.23519 * 19 18 17 21 21 H 1.07995 * 120.00021 * 354.92756 * 20 19 18 22 22 C 1.38660 * 120.00010 * 174.92297 * 20 19 18 23 23 N 1.31553 * 119.99927 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00099 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46747 * 269.99998 * 24 22 20 26 26 H 1.48497 * 109.47192 * 29.99915 * 24 22 20 27 27 H 1.48493 * 109.47045 * 149.99984 * 24 22 20 28 28 C 1.38075 * 119.96627 * 90.00212 * 14 13 11 29 29 H 1.08009 * 120.00039 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00183 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00137 * 179.97438 * 2 1 3 32 32 H 1.08996 * 110.61676 * 158.56429 * 6 5 3 33 33 H 1.08996 * 110.61894 * 281.40324 * 6 5 3 34 34 H 1.09002 * 111.00640 * 204.79739 * 7 6 5 35 35 H 1.08993 * 110.96368 * 81.07555 * 7 6 5 36 36 H 0.96996 * 120.00316 * 336.83571 * 10 8 3 37 37 H 1.09006 * 109.46461 * 60.00228 * 13 11 10 38 38 H 1.08993 * 109.47092 * 300.00302 * 13 11 10 39 39 H 1.07998 * 119.93779 * 0.03022 * 15 14 13 40 40 H 1.07995 * 119.96753 * 180.02562 * 16 15 14 41 41 H 1.07994 * 120.03473 * 180.25972 * 17 16 15 42 42 H 0.96999 * 120.00146 * 179.97438 * 23 22 20 43 43 H 1.08006 * 120.03104 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3612 2.1384 -0.0180 5 8 2.9309 1.3720 -1.1442 6 6 4.1094 2.1004 -0.7378 7 6 4.3862 1.5713 0.6963 8 6 2.9530 1.3966 1.2551 9 1 2.8812 0.4804 1.8412 10 7 2.5748 2.5550 2.0682 11 6 2.8663 2.5788 3.3838 12 8 3.4412 1.6411 3.8947 13 6 2.4777 3.7708 4.2202 14 6 2.9139 3.5480 5.6454 15 6 2.0592 2.9314 6.5412 16 6 2.4555 2.7256 7.8499 17 6 3.7090 3.1309 8.2652 18 6 4.5675 3.7546 7.3695 19 8 5.7984 4.1578 7.7757 20 6 6.1681 3.8270 9.0295 21 1 5.4658 3.3381 9.6883 22 6 7.4501 4.1144 9.4729 23 7 7.8110 3.7912 10.6960 24 14 8.6647 4.9606 8.3335 25 1 9.4251 3.9369 7.5725 26 1 7.9281 5.8355 7.3865 27 1 9.6065 5.7818 9.1359 28 6 4.1666 3.9592 6.0556 29 1 -0.5401 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 4.9469 1.8745 -1.3979 33 1 3.9121 3.1723 -0.7231 34 1 4.9452 2.3017 1.2811 35 1 4.9106 0.6163 0.6651 36 1 2.1148 3.3049 1.6597 37 1 1.3958 3.9001 4.1877 38 1 2.9625 4.6642 3.8269 39 1 1.0802 2.6098 6.2179 40 1 1.7861 2.2435 8.5469 41 1 4.0196 2.9662 9.2863 42 1 8.7079 3.9919 11.0061 43 1 4.8335 4.4407 5.3556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834142584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:53 Heat of formation + Delta-G solvation = -81.583791 kcal Electronic energy + Delta-G solvation = -25589.272550 eV Core-core repulsion = 21792.981997 eV Total energy + Delta-G solvation = -3796.290553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50096 -40.86503 -39.90741 -38.27274 -35.64267 -34.77066 -34.48910 -33.59295 -31.83462 -31.04870 -29.30953 -28.05364 -27.15006 -23.96783 -23.60841 -23.12386 -22.12858 -21.54502 -20.75229 -19.66810 -18.96121 -18.16308 -17.72381 -17.39809 -16.87815 -16.74934 -16.31110 -16.00688 -15.88159 -15.68301 -15.57047 -15.01530 -14.98161 -14.57165 -14.39710 -14.17034 -14.11483 -13.95187 -13.47668 -13.18346 -13.05575 -12.76705 -12.52298 -12.44885 -12.36236 -12.33552 -12.13010 -12.08642 -11.92464 -11.32131 -11.03027 -10.91369 -10.78104 -10.59880 -10.04110 -9.66840 -9.06525 -8.51018 -6.23824 0.48210 0.70102 1.19848 1.28815 1.34018 1.49911 1.66132 2.10188 2.26946 2.77500 2.99675 3.06279 3.17030 3.50498 3.59309 3.76021 3.86287 3.98862 4.07276 4.10651 4.19472 4.25070 4.30458 4.43441 4.45563 4.55456 4.65650 4.71033 4.73576 4.81582 4.86083 4.95310 4.98588 5.02008 5.24944 5.38432 5.40325 5.63121 5.64804 5.68308 5.72542 5.76335 5.86387 5.91233 6.24795 6.54198 6.83294 7.29326 7.58246 8.60939 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002768 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.488058 B =10112.826770 C =11170.116026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.181 4.181 3 C 0.109 3.891 4 H 0.098 0.902 5 O -0.383 6.383 6 C 0.048 3.952 7 C -0.167 4.167 8 C 0.119 3.881 9 H 0.082 0.918 10 N -0.708 5.708 11 C 0.517 3.483 12 O -0.575 6.575 13 C -0.089 4.089 14 C -0.029 4.029 15 C -0.171 4.171 16 C -0.079 4.079 17 C -0.242 4.242 18 C 0.118 3.882 19 O -0.247 6.247 20 C -0.400 4.400 21 H 0.079 0.921 22 C 0.008 3.992 23 N -0.925 5.925 24 Si 0.972 3.028 25 H -0.269 1.269 26 H -0.261 1.261 27 H -0.264 1.264 28 C -0.180 4.180 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.419 0.581 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.285 0.715 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 -0.719 -25.776 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.200 4.200 3 C 0.051 3.949 4 H 0.115 0.885 5 O -0.302 6.302 6 C -0.028 4.028 7 C -0.206 4.206 8 C 0.013 3.987 9 H 0.100 0.900 10 N -0.363 5.363 11 C 0.305 3.695 12 O -0.453 6.453 13 C -0.128 4.128 14 C -0.029 4.029 15 C -0.189 4.189 16 C -0.097 4.097 17 C -0.261 4.261 18 C 0.069 3.931 19 O -0.155 6.155 20 C -0.476 4.476 21 H 0.097 0.903 22 C -0.190 4.190 23 N -0.566 5.566 24 Si 0.794 3.206 25 H -0.194 1.194 26 H -0.185 1.185 27 H -0.189 1.189 28 C -0.199 4.199 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.257 0.743 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.498 -1.346 -25.583 29.942 hybrid contribution 0.899 0.176 0.737 1.176 sum -14.599 -1.170 -24.847 28.842 Atomic orbital electron populations 1.24134 0.95140 1.03620 0.96451 1.22849 0.96527 0.97365 1.03221 1.22039 0.91801 0.97225 0.83852 0.88465 1.88952 1.31183 1.76869 1.33229 1.23769 0.88100 0.96643 0.94240 1.23591 0.96686 1.02889 0.97454 1.22186 0.93940 0.90353 0.92198 0.89994 1.45844 1.61112 1.21425 1.07932 1.20987 0.77712 0.88446 0.82390 1.90780 1.42368 1.39123 1.72993 1.20716 1.06021 0.97026 0.89065 1.19233 0.92082 0.96157 0.95461 1.21020 1.01284 1.03629 0.92951 1.21114 0.94190 0.97281 0.97107 1.21327 0.96948 1.07600 1.00215 1.19601 0.85169 0.94046 0.94256 1.83501 1.29966 1.70167 1.31823 1.20711 0.99568 1.40498 0.86839 0.90347 1.25298 0.98315 0.97575 0.97769 1.69730 1.21463 1.47788 1.17585 0.85208 0.77873 0.79038 0.78521 1.19419 1.18503 1.18863 1.20280 0.98369 1.08757 0.92520 0.86846 0.86706 0.87282 0.87596 0.90132 0.90240 0.90312 0.74279 0.83704 0.85249 0.83373 0.84294 0.87630 0.90565 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 14.32 67.79 0.97 -0.70 16 2 C -0.18 -2.60 8.95 25.65 0.23 -2.37 16 3 C 0.11 1.51 3.57 30.22 0.11 1.62 16 4 H 0.10 0.93 7.28 -2.39 -0.02 0.91 16 5 O -0.38 -6.45 11.18 -148.98 -1.66 -8.12 16 6 C 0.05 0.63 7.73 72.79 0.56 1.19 16 7 C -0.17 -2.86 6.91 32.02 0.22 -2.64 16 8 C 0.12 2.05 2.98 45.98 0.14 2.18 16 9 H 0.08 1.87 7.16 -2.39 -0.02 1.85 16 10 N -0.71 -10.33 5.09 -437.84 -2.23 -12.56 16 11 C 0.52 11.77 7.82 87.66 0.69 12.46 16 12 O -0.57 -20.15 15.71 -3.03 -0.05 -20.20 16 13 C -0.09 -1.65 5.83 29.11 0.17 -1.48 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 15 C -0.17 -5.26 9.70 22.30 0.22 -5.05 16 16 C -0.08 -2.88 10.04 22.25 0.22 -2.65 16 17 C -0.24 -11.27 9.17 22.39 0.21 -11.07 16 18 C 0.12 5.83 6.65 22.58 0.15 5.98 16 19 O -0.25 -14.01 8.59 -22.76 -0.20 -14.21 16 20 C -0.40 -24.53 9.95 67.92 0.68 -23.85 16 21 H 0.08 5.05 5.43 -2.91 -0.02 5.04 16 22 C 0.01 0.51 5.49 84.84 0.47 0.97 16 23 N -0.92 -56.78 13.96 21.61 0.30 -56.48 16 24 Si 0.97 46.78 28.62 68.60 1.96 48.74 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.26 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 28 C -0.18 -7.21 9.65 22.39 0.22 -6.99 16 29 H 0.11 0.86 7.85 -2.91 -0.02 0.84 16 30 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.42 2.78 8.31 -92.71 -0.77 2.01 16 37 H 0.15 1.48 8.08 -2.38 -0.02 1.46 16 38 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 42 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 43 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -80.50 366.51 3.53 -76.97 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.26 Total: 19.23 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 5.15 Total: -33.38 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.93 Total: -69.03 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.91 Total: -42.52 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.96 Total: 48.74 kcal Total: -80.50 3.53 -76.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834142584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.615 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds