Wall clock time and date at job start Tue Mar 31 2020 11:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50692 * 120.00003 * 2 1 4 4 C 1.53001 * 109.46935 * 125.00683 * 3 2 1 5 5 C 1.53007 * 109.47075 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47075 * 179.97438 * 5 4 3 7 7 O 1.45196 * 109.47023 * 179.97438 * 6 5 4 8 8 C 1.34750 * 116.99821 * 179.97438 * 7 6 5 9 9 O 1.21509 * 120.00546 * 0.02562 * 8 7 6 10 10 C 1.47469 * 120.00009 * 179.97438 * 8 7 6 11 11 C 1.39842 * 120.06576 * 0.29748 * 10 8 7 12 12 C 1.37607 * 119.92766 * 180.27360 * 11 10 8 13 13 C 1.39265 * 120.06987 * 359.45348 * 12 11 10 14 14 N 1.39069 * 119.93377 * 180.27670 * 13 12 11 15 15 C 1.34779 * 120.00240 * 33.63920 * 14 13 12 16 16 O 1.21726 * 119.99836 * 5.28426 * 15 14 13 17 17 C 1.46200 * 120.00357 * 185.28137 * 15 14 13 18 18 H 1.07998 * 119.99750 * 0.02562 * 17 15 14 19 19 C 1.40120 * 120.00014 * 180.02562 * 17 15 14 20 20 N 1.30637 * 120.00149 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 119.99990 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47445 * 90.00191 * 21 19 17 23 23 H 1.48503 * 109.47254 * 209.99954 * 21 19 17 24 24 H 1.48500 * 109.47058 * 329.99657 * 21 19 17 25 25 C 1.39273 * 120.13791 * 0.24942 * 13 12 11 26 26 C 1.37611 * 120.06421 * 0.02805 * 25 13 12 27 27 H 1.07997 * 119.99861 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00013 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99861 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47479 * 5.00832 * 3 2 1 31 31 H 1.09004 * 109.47359 * 245.00333 * 3 2 1 32 32 H 1.08994 * 109.47342 * 60.00129 * 4 3 2 33 33 H 1.09003 * 109.47265 * 299.99710 * 4 3 2 34 34 H 1.08994 * 109.47054 * 59.99801 * 5 4 3 35 35 H 1.09003 * 109.46714 * 299.99896 * 5 4 3 36 36 H 1.09001 * 109.47130 * 59.99310 * 6 5 4 37 37 H 1.09004 * 109.46811 * 299.99835 * 6 5 4 38 38 H 1.07996 * 120.03320 * 359.97438 * 11 10 8 39 39 H 1.08000 * 119.96104 * 179.72348 * 12 11 10 40 40 H 0.97002 * 120.00141 * 213.64507 * 14 13 12 41 41 H 0.97004 * 120.00211 * 179.97438 * 20 19 17 42 42 H 1.07993 * 119.96841 * 180.02562 * 25 13 12 43 43 H 1.08004 * 120.03335 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0351 1.3329 1.1815 5 6 3.7997 2.6582 1.1819 6 6 4.7709 2.6864 2.3639 7 8 5.4969 3.9438 2.3639 8 6 6.3985 4.1296 3.3479 9 8 6.5736 3.2644 4.1829 10 6 7.1735 5.3826 3.4109 11 6 6.9695 6.3815 2.4537 12 6 7.6983 7.5472 2.5119 13 6 8.6302 7.7375 3.5293 14 7 9.3610 8.9192 3.5887 15 6 8.8003 10.0791 3.1929 16 8 7.6258 10.1099 2.8747 17 6 9.6026 11.3004 3.1457 18 1 10.6448 11.2730 3.4277 19 6 9.0194 12.5063 2.7347 20 7 7.7590 12.5394 2.3932 21 14 10.0447 14.0666 2.6738 22 1 10.6671 14.1979 1.3319 23 1 9.1741 15.2414 2.9326 24 1 11.1080 14.0009 3.7084 25 6 8.8312 6.7472 4.4876 26 6 8.1095 5.5769 4.4315 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6212 1.4026 -0.9314 32 1 3.7400 0.5064 1.0919 33 1 2.4774 1.2354 2.1130 34 1 3.0945 3.4844 1.2718 35 1 4.3574 2.7562 0.2505 36 1 5.4760 1.8600 2.2745 37 1 4.2128 2.5886 3.2951 38 1 6.2442 6.2361 1.6669 39 1 7.5444 8.3171 1.7704 40 1 10.2745 8.9086 3.9149 41 1 7.3551 13.3743 2.1090 42 1 9.5542 6.8979 5.2756 43 1 8.2655 4.8094 5.1752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837347020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:41 Heat of formation + Delta-G solvation = -117.793085 kcal Electronic energy + Delta-G solvation = -24357.269488 eV Core-core repulsion = 20559.408782 eV Total energy + Delta-G solvation = -3797.860706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63757 -40.71277 -38.77820 -37.86251 -36.96265 -35.42574 -34.57747 -33.98924 -31.99155 -31.21990 -29.50538 -28.40056 -25.61177 -24.28476 -23.76431 -22.45869 -22.15853 -21.37850 -20.60372 -19.56687 -18.92620 -18.22390 -17.74867 -17.70161 -17.50997 -16.49659 -16.17218 -15.82566 -15.64257 -15.45504 -14.95942 -14.81503 -14.66140 -14.49250 -14.33001 -14.15142 -13.63864 -13.55055 -13.22351 -13.14216 -13.10142 -12.79113 -12.74169 -12.57667 -12.23052 -12.12965 -12.03515 -11.81910 -11.74144 -11.51669 -11.41240 -11.16781 -10.90588 -10.19656 -10.12667 -9.84571 -8.95006 -8.39262 -6.97227 -0.27509 0.44952 1.38585 1.40039 1.41608 1.51314 1.57819 1.64999 2.20145 2.35593 2.77820 2.88603 3.53666 3.58953 3.87027 3.88864 3.92502 4.00078 4.00966 4.18496 4.32101 4.36324 4.42522 4.45699 4.54852 4.64115 4.66558 4.79311 4.87193 4.97035 5.04305 5.08360 5.19450 5.24512 5.26784 5.32939 5.34393 5.39293 5.44554 5.67333 5.77200 5.78094 5.91408 6.12487 6.24483 6.70414 6.76086 7.25320 8.29238 8.53732 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.001959 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.705917 B =14290.011968 C =15490.850778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.094 4.094 4 C -0.106 4.106 5 C -0.114 4.114 6 C 0.061 3.939 7 O -0.358 6.358 8 C 0.523 3.477 9 O -0.538 6.538 10 C -0.187 4.187 11 C -0.031 4.031 12 C -0.170 4.170 13 C 0.208 3.792 14 N -0.687 5.687 15 C 0.526 3.474 16 O -0.601 6.601 17 C -0.562 4.562 18 H 0.096 0.904 19 C 0.031 3.969 20 N -0.810 5.810 21 Si 1.000 3.000 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.247 1.247 25 C -0.176 4.176 26 C -0.023 4.023 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.413 0.587 41 H 0.279 0.721 42 H 0.160 0.840 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -19.416 -2.261 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.179 4.179 3 C -0.131 4.131 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.012 4.012 7 O -0.275 6.275 8 C 0.371 3.629 9 O -0.431 6.431 10 C -0.189 4.189 11 C -0.050 4.050 12 C -0.191 4.191 13 C 0.108 3.892 14 N -0.330 5.330 15 C 0.334 3.666 16 O -0.487 6.487 17 C -0.597 4.597 18 H 0.114 0.886 19 C -0.186 4.186 20 N -0.439 5.439 21 Si 0.819 3.181 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.170 1.170 25 C -0.196 4.196 26 C -0.041 4.041 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.162 0.838 39 H 0.128 0.872 40 H 0.250 0.750 41 H 0.089 0.911 42 H 0.177 0.823 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.777 -19.463 -2.346 20.437 hybrid contribution 0.462 0.717 0.072 0.856 sum -5.315 -18.746 -2.274 19.617 Atomic orbital electron populations 1.24026 0.96169 1.02386 1.01269 1.23079 0.96235 0.98798 0.99816 1.20751 0.98113 0.95556 0.98722 1.21389 0.97877 0.96031 0.99038 1.21590 0.97224 0.99453 0.96927 1.23327 0.94315 0.82654 1.00900 1.86552 1.49962 1.41798 1.49154 1.21068 0.77203 0.86522 0.78104 1.90774 1.66719 1.45130 1.40436 1.19013 1.03871 0.93791 1.02263 1.21276 0.96061 0.90728 0.96928 1.21142 1.00371 0.98032 0.99592 1.18522 0.91960 0.86625 0.92093 1.43795 1.16897 1.05316 1.66956 1.18783 0.87243 0.83211 0.77390 1.90617 1.18558 1.85749 1.53738 1.21432 0.98426 0.92247 1.47591 0.88583 1.26986 0.95975 1.04187 0.91479 1.70131 1.13876 1.28842 1.31060 0.84965 0.78235 0.74856 0.80008 1.18611 1.19898 1.17007 1.21061 1.05118 0.94085 0.99380 1.21131 0.91212 0.96473 0.95332 0.88523 0.87752 0.86709 0.91423 0.90337 0.90704 0.91473 0.90776 0.90216 0.90768 0.91255 0.83760 0.87224 0.75046 0.91139 0.82274 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.31 14.32 67.78 0.97 -1.34 16 2 C -0.16 -1.88 9.52 25.65 0.24 -1.64 16 3 C -0.09 -1.10 5.66 29.85 0.17 -0.93 16 4 C -0.11 -1.29 5.20 30.60 0.16 -1.13 16 5 C -0.11 -1.77 5.60 30.60 0.17 -1.60 16 6 C 0.06 1.27 5.48 71.98 0.39 1.66 16 7 O -0.36 -9.81 9.46 -56.61 -0.54 -10.35 16 8 C 0.52 16.29 7.89 70.25 0.55 16.85 16 9 O -0.54 -18.07 16.13 19.81 0.32 -17.75 16 10 C -0.19 -6.07 5.88 -20.07 -0.12 -6.19 16 11 C -0.03 -1.09 9.60 22.51 0.22 -0.87 16 12 C -0.17 -7.13 8.62 22.37 0.19 -6.94 16 13 C 0.21 8.25 6.27 38.49 0.24 8.49 16 14 N -0.69 -29.23 5.30 -307.50 -1.63 -30.86 16 15 C 0.53 28.64 7.46 86.31 0.64 29.28 16 16 O -0.60 -37.71 12.69 -4.43 -0.06 -37.76 16 17 C -0.56 -29.61 9.54 24.80 0.24 -29.37 16 18 H 0.10 4.44 7.85 -2.91 -0.02 4.42 16 19 C 0.03 1.60 5.50 85.33 0.47 2.07 16 20 N -0.81 -46.93 11.82 21.85 0.26 -46.67 16 21 Si 1.00 38.31 29.56 68.60 2.03 40.34 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 25 C -0.18 -5.47 9.94 22.37 0.22 -5.25 16 26 C -0.02 -0.68 9.58 22.51 0.22 -0.46 16 27 H 0.10 1.07 7.84 -2.91 -0.02 1.05 16 28 H 0.10 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.07 0.81 7.79 -2.39 -0.02 0.79 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.14 4.52 7.60 -2.91 -0.02 4.49 16 39 H 0.11 5.41 6.41 -2.91 -0.02 5.39 16 40 H 0.41 14.35 8.79 -92.71 -0.81 13.53 16 41 H 0.28 14.60 8.29 -92.71 -0.77 13.83 16 42 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 43 H 0.15 3.93 7.64 -2.91 -0.02 3.91 16 Total: -1.00 -71.42 375.71 5.57 -65.85 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.20 Total: 34.58 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 4.98 Total: 2.63 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.37 Total: -77.53 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -0.27 Total: -65.87 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -71.42 5.57 -65.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837347020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.941 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds