Wall clock time and date at job start Tue Mar 31 2020 11:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 110.76264 * 2 1 4 4 C 1.54365 * 110.69678 * 236.80775 * 2 1 3 5 5 O 1.45946 * 105.07360 * 259.43327 * 4 2 1 6 6 C 1.34563 * 108.40159 * 327.56282 * 5 4 2 7 7 O 1.20830 * 125.94678 * 213.35956 * 6 5 4 8 8 C 1.51510 * 108.10817 * 33.33392 * 6 5 4 9 9 H 1.09009 * 110.40460 * 220.71514 * 8 6 5 10 10 N 1.46496 * 110.40463 * 98.41148 * 8 6 5 11 11 C 1.34774 * 120.00453 * 86.45007 * 10 8 6 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.99913 * 179.97438 * 11 10 8 14 14 C 1.50703 * 109.46809 * 180.02562 * 13 11 10 15 15 C 1.37641 * 120.12617 * 265.00175 * 14 13 11 16 16 C 1.38616 * 120.24708 * 180.02562 * 15 14 13 17 17 C 1.38657 * 120.50000 * 359.97438 * 16 15 14 18 18 C 1.37600 * 120.25133 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12901 * 85.02584 * 14 13 11 20 20 C 1.41401 * 120.24300 * 359.95491 * 19 14 13 21 21 H 1.08000 * 119.99687 * 329.79347 * 20 19 14 22 22 C 1.39940 * 120.00240 * 149.79324 * 20 19 14 23 23 N 1.30821 * 119.99907 * 162.08843 * 22 20 19 24 24 Si 1.86803 * 119.99834 * 342.09537 * 22 20 19 25 25 H 1.48497 * 109.47202 * 95.38700 * 24 22 20 26 26 H 1.48499 * 109.46743 * 215.38839 * 24 22 20 27 27 H 1.48499 * 109.46908 * 335.38870 * 24 22 20 28 28 H 1.08998 * 109.46763 * 296.81716 * 1 2 3 29 29 H 1.09004 * 109.46593 * 56.80860 * 1 2 3 30 30 H 1.08996 * 109.47430 * 176.81578 * 1 2 3 31 31 H 1.08999 * 109.47009 * 183.19280 * 3 2 1 32 32 H 1.08999 * 109.46890 * 303.18087 * 3 2 1 33 33 H 1.08990 * 109.47604 * 63.18808 * 3 2 1 34 34 H 1.09006 * 110.32196 * 140.53480 * 4 2 1 35 35 H 1.08995 * 110.32527 * 18.33353 * 4 2 1 36 36 H 0.97010 * 119.99660 * 266.45295 * 10 8 6 37 37 H 1.09003 * 109.46750 * 60.00870 * 13 11 10 38 38 H 1.09001 * 109.47177 * 300.00309 * 13 11 10 39 39 H 1.07995 * 119.87555 * 0.02562 * 15 14 13 40 40 H 1.08000 * 119.75024 * 180.02562 * 16 15 14 41 41 H 1.07993 * 119.87585 * 179.74741 * 17 16 15 42 42 H 1.08001 * 120.13051 * 179.97438 * 18 17 16 43 43 H 0.97008 * 119.99871 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0724 1.4306 0.0000 4 6 2.0756 -0.7905 -1.2084 5 8 2.4515 -2.0942 -0.6707 6 6 2.8711 -1.9260 0.5967 7 8 3.7323 -2.5681 1.1499 8 6 2.0760 -0.7910 1.2092 9 1 2.7228 -0.1592 1.8182 10 7 0.9722 -1.3176 2.0157 11 6 1.1777 -1.6469 3.3064 12 8 2.2765 -1.5067 3.8003 13 6 0.0420 -2.1880 4.1360 14 6 0.5318 -2.4740 5.5323 15 6 0.9485 -3.7410 5.8722 16 6 1.3990 -4.0070 7.1558 17 6 1.4358 -3.0025 8.1110 18 6 1.0240 -1.7286 7.7935 19 6 0.5643 -1.4471 6.4935 20 6 0.1390 -0.1416 6.1556 21 1 0.2519 0.2180 5.1435 22 6 -0.4280 0.6845 7.1325 23 7 -0.4992 1.9759 6.9362 24 14 -1.0833 -0.0570 8.7169 25 1 -0.0400 0.0253 9.7705 26 1 -2.2880 0.6936 9.1535 27 1 -1.4427 -1.4792 8.4863 28 1 -0.3633 0.4636 0.9171 29 1 -0.3633 0.5626 -0.8601 30 1 -0.3634 -1.0260 -0.0571 31 1 3.1607 1.4065 -0.0572 32 1 1.6753 1.9696 -0.8601 33 1 1.7679 1.9347 0.9171 34 1 2.9477 -0.2880 -1.6271 35 1 1.3019 -0.9031 -1.9677 36 1 0.0932 -1.4294 1.6207 37 1 -0.3306 -3.1082 3.6857 38 1 -0.7611 -1.4522 4.1766 39 1 0.9245 -4.5308 5.1361 40 1 1.7245 -5.0039 7.4138 41 1 1.7848 -3.2219 9.1092 42 1 1.0532 -0.9478 8.5391 43 1 -0.8926 2.5485 7.6132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837634704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:31 Heat of formation + Delta-G solvation = -94.894645 kcal Electronic energy + Delta-G solvation = -27083.266933 eV Core-core repulsion = 23286.399178 eV Total energy + Delta-G solvation = -3796.867755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55431 -39.11387 -37.80443 -37.54311 -35.82284 -33.56482 -33.26233 -31.83312 -30.29334 -28.48160 -27.79762 -26.90296 -26.35692 -24.74985 -21.76531 -21.29328 -20.42025 -20.21051 -19.39111 -17.48815 -17.29330 -17.08678 -16.60951 -16.37758 -15.70022 -15.07404 -14.87910 -14.49605 -14.28476 -14.04913 -13.98317 -13.67792 -13.48986 -13.33191 -12.92974 -12.67787 -12.43744 -12.37039 -12.12937 -11.91028 -11.62202 -11.58142 -11.42266 -11.34643 -11.13081 -10.78627 -10.75863 -10.70288 -10.51230 -10.22822 -9.68553 -9.54938 -9.28689 -9.10324 -8.81572 -7.56232 -7.47425 -6.91925 -4.45703 1.80510 2.58110 2.75233 3.04004 3.14499 3.18668 3.25294 3.34342 3.60249 3.76970 4.00024 4.01075 4.28627 4.35174 4.54686 4.79129 5.01168 5.05175 5.22027 5.31182 5.38123 5.44788 5.49274 5.59776 5.66649 5.84403 5.86559 5.90189 5.98264 6.12417 6.22200 6.28419 6.50897 6.51804 6.60656 6.75698 6.98267 7.23753 7.39740 7.45566 7.68809 7.73852 7.80540 7.93613 8.17266 8.37736 8.70694 8.74126 8.85030 10.10258 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.004244 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.821410 B = 6595.622507 C = 7766.173322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.469 3.531 7 O -0.424 6.424 8 C 0.098 3.902 9 H 0.126 0.874 10 N -0.727 5.727 11 C 0.513 3.487 12 O -0.502 6.502 13 C -0.071 4.071 14 C -0.168 4.168 15 C -0.068 4.068 16 C -0.240 4.240 17 C -0.080 4.080 18 C -0.232 4.232 19 C 0.110 3.890 20 C -0.445 4.445 21 H 0.088 0.912 22 C 0.086 3.914 23 N -0.811 5.811 24 Si 0.909 3.091 25 H -0.272 1.272 26 H -0.292 1.292 27 H -0.244 1.244 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.404 0.596 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -0.329 -15.515 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.197 4.197 4 C -0.013 4.013 5 O -0.272 6.272 6 C 0.305 3.695 7 O -0.301 6.301 8 C -0.010 4.010 9 H 0.144 0.856 10 N -0.387 5.387 11 C 0.300 3.700 12 O -0.373 6.373 13 C -0.110 4.110 14 C -0.170 4.170 15 C -0.086 4.086 16 C -0.259 4.259 17 C -0.098 4.098 18 C -0.252 4.252 19 C 0.107 3.893 20 C -0.473 4.473 21 H 0.106 0.894 22 C -0.133 4.133 23 N -0.436 5.436 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.167 1.167 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.311 -0.467 -14.929 14.993 hybrid contribution -0.589 -0.047 0.547 0.805 sum -1.901 -0.514 -14.382 14.516 Atomic orbital electron populations 1.21876 0.91939 1.02585 1.03918 1.22057 0.98248 0.96872 0.93467 1.21859 1.01163 0.93024 1.03669 1.24248 1.01223 0.79960 0.95884 1.87291 1.77998 1.32039 1.29893 1.23885 0.80343 0.83978 0.81285 1.90746 1.26218 1.48133 1.65028 1.22127 0.91243 0.94080 0.93564 0.85585 1.46205 1.11940 1.69080 1.11523 1.21364 0.91234 0.76826 0.80573 1.90738 1.25625 1.50300 1.70633 1.20279 0.96200 1.01217 0.93330 1.19043 1.10686 0.93424 0.93864 1.20449 0.97387 0.95367 0.95391 1.20343 1.12926 0.97963 0.94696 1.20607 0.98347 0.93549 0.97301 1.20999 1.09841 0.96314 0.98001 1.17479 0.88860 0.92315 0.90632 1.19382 1.34633 0.95105 0.98220 0.89363 1.26132 0.93522 0.94087 0.99538 1.69703 1.33639 1.04515 1.35734 0.86354 0.77892 0.81273 0.80918 1.19771 1.22011 1.16703 0.90376 0.91039 0.91702 0.91846 0.91248 0.90744 0.89498 0.86910 0.75789 0.90202 0.87909 0.89077 0.88962 0.88982 0.88309 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 7.12 37.16 0.26 -0.75 16 2 C -0.11 -0.90 1.09 -153.02 -0.17 -1.07 16 3 C -0.14 -1.04 8.32 37.15 0.31 -0.73 16 4 C 0.06 0.47 7.04 37.87 0.27 0.73 16 5 O -0.35 -4.47 11.17 -39.73 -0.44 -4.91 16 6 C 0.47 7.37 8.13 36.40 0.30 7.67 16 7 O -0.42 -8.58 18.00 -18.32 -0.33 -8.91 16 8 C 0.10 1.33 2.97 -67.92 -0.20 1.13 16 9 H 0.13 1.97 7.25 -51.92 -0.38 1.60 16 10 N -0.73 -10.55 4.66 -53.79 -0.25 -10.80 16 11 C 0.51 10.04 7.43 -10.98 -0.08 9.96 16 12 O -0.50 -12.33 15.74 5.56 0.09 -12.25 16 13 C -0.07 -1.34 5.19 -29.03 -0.15 -1.49 16 14 C -0.17 -3.92 4.43 -103.91 -0.46 -4.38 16 15 C -0.07 -1.50 9.66 -39.66 -0.38 -1.89 16 16 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 17 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 18 C -0.23 -5.86 7.17 -38.87 -0.28 -6.14 16 19 C 0.11 2.83 5.10 -106.82 -0.54 2.29 16 20 C -0.44 -11.82 8.55 -37.74 -0.32 -12.14 16 21 H 0.09 2.44 7.00 -52.49 -0.37 2.07 16 22 C 0.09 2.22 5.41 -17.35 -0.09 2.13 16 23 N -0.81 -21.35 13.93 55.55 0.77 -20.57 16 24 Si 0.91 20.79 24.52 -169.99 -4.17 16.63 16 25 H -0.27 -6.15 6.71 56.52 0.38 -5.78 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16 28 H 0.08 0.64 7.74 -51.93 -0.40 0.24 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 7.04 -51.93 -0.37 0.05 16 31 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.52 7.77 -51.93 -0.40 0.12 16 35 H 0.11 0.55 7.82 -51.93 -0.41 0.14 16 36 H 0.40 4.46 5.84 -40.82 -0.24 4.22 16 37 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 38 H 0.10 1.88 7.13 -51.93 -0.37 1.51 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 2.48 4.77 -52.49 -0.25 2.23 16 43 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -34.38 351.77 -7.10 -41.48 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.73 Total: 6.67 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.34 Total: -12.63 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.52 Total: -31.37 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.69 Total: -26.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.17 Total: 16.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.38 -7.10 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837634704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.416 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds