Wall clock time and date at job start Tue Mar 31 2020 11:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 110.76264 * 2 1 4 4 C 1.54365 * 110.69678 * 236.80775 * 2 1 3 5 5 O 1.45946 * 105.07360 * 259.43327 * 4 2 1 6 6 C 1.34563 * 108.40159 * 327.56282 * 5 4 2 7 7 O 1.20830 * 125.94678 * 213.35956 * 6 5 4 8 8 C 1.51510 * 108.10817 * 33.33392 * 6 5 4 9 9 H 1.09009 * 110.40460 * 220.71514 * 8 6 5 10 10 N 1.46496 * 110.40463 * 98.41148 * 8 6 5 11 11 C 1.34774 * 120.00453 * 86.45007 * 10 8 6 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.99913 * 179.97438 * 11 10 8 14 14 C 1.50703 * 109.46809 * 180.02562 * 13 11 10 15 15 C 1.37641 * 120.12617 * 265.00175 * 14 13 11 16 16 C 1.38616 * 120.24708 * 180.02562 * 15 14 13 17 17 C 1.38657 * 120.50000 * 359.97438 * 16 15 14 18 18 C 1.37600 * 120.25133 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12901 * 85.02584 * 14 13 11 20 20 C 1.41401 * 120.24300 * 359.95491 * 19 14 13 21 21 H 1.08000 * 119.99687 * 329.79347 * 20 19 14 22 22 C 1.39940 * 120.00240 * 149.79324 * 20 19 14 23 23 N 1.30821 * 119.99907 * 162.08843 * 22 20 19 24 24 Si 1.86803 * 119.99834 * 342.09537 * 22 20 19 25 25 H 1.48497 * 109.47202 * 95.38700 * 24 22 20 26 26 H 1.48499 * 109.46743 * 215.38839 * 24 22 20 27 27 H 1.48499 * 109.46908 * 335.38870 * 24 22 20 28 28 H 1.08998 * 109.46763 * 296.81716 * 1 2 3 29 29 H 1.09004 * 109.46593 * 56.80860 * 1 2 3 30 30 H 1.08996 * 109.47430 * 176.81578 * 1 2 3 31 31 H 1.08999 * 109.47009 * 183.19280 * 3 2 1 32 32 H 1.08999 * 109.46890 * 303.18087 * 3 2 1 33 33 H 1.08990 * 109.47604 * 63.18808 * 3 2 1 34 34 H 1.09006 * 110.32196 * 140.53480 * 4 2 1 35 35 H 1.08995 * 110.32527 * 18.33353 * 4 2 1 36 36 H 0.97010 * 119.99660 * 266.45295 * 10 8 6 37 37 H 1.09003 * 109.46750 * 60.00870 * 13 11 10 38 38 H 1.09001 * 109.47177 * 300.00309 * 13 11 10 39 39 H 1.07995 * 119.87555 * 0.02562 * 15 14 13 40 40 H 1.08000 * 119.75024 * 180.02562 * 16 15 14 41 41 H 1.07993 * 119.87585 * 179.74741 * 17 16 15 42 42 H 1.08001 * 120.13051 * 179.97438 * 18 17 16 43 43 H 0.97008 * 119.99871 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0724 1.4306 0.0000 4 6 2.0756 -0.7905 -1.2084 5 8 2.4515 -2.0942 -0.6707 6 6 2.8711 -1.9260 0.5967 7 8 3.7323 -2.5681 1.1499 8 6 2.0760 -0.7910 1.2092 9 1 2.7228 -0.1592 1.8182 10 7 0.9722 -1.3176 2.0157 11 6 1.1777 -1.6469 3.3064 12 8 2.2765 -1.5067 3.8003 13 6 0.0420 -2.1880 4.1360 14 6 0.5318 -2.4740 5.5323 15 6 0.9485 -3.7410 5.8722 16 6 1.3990 -4.0070 7.1558 17 6 1.4358 -3.0025 8.1110 18 6 1.0240 -1.7286 7.7935 19 6 0.5643 -1.4471 6.4935 20 6 0.1390 -0.1416 6.1556 21 1 0.2519 0.2180 5.1435 22 6 -0.4280 0.6845 7.1325 23 7 -0.4992 1.9759 6.9362 24 14 -1.0833 -0.0570 8.7169 25 1 -0.0400 0.0253 9.7705 26 1 -2.2880 0.6936 9.1535 27 1 -1.4427 -1.4792 8.4863 28 1 -0.3633 0.4636 0.9171 29 1 -0.3633 0.5626 -0.8601 30 1 -0.3634 -1.0260 -0.0571 31 1 3.1607 1.4065 -0.0572 32 1 1.6753 1.9696 -0.8601 33 1 1.7679 1.9347 0.9171 34 1 2.9477 -0.2880 -1.6271 35 1 1.3019 -0.9031 -1.9677 36 1 0.0932 -1.4294 1.6207 37 1 -0.3306 -3.1082 3.6857 38 1 -0.7611 -1.4522 4.1766 39 1 0.9245 -4.5308 5.1361 40 1 1.7245 -5.0039 7.4138 41 1 1.7848 -3.2219 9.1092 42 1 1.0532 -0.9478 8.5391 43 1 -0.8926 2.5485 7.6132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837634704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:30 Heat of formation + Delta-G solvation = -117.951407 kcal Electronic energy + Delta-G solvation = -27084.266749 eV Core-core repulsion = 23286.399178 eV Total energy + Delta-G solvation = -3797.867571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62292 -40.68169 -39.30717 -39.00167 -36.90745 -35.48252 -34.49982 -33.49170 -32.16570 -29.73737 -28.63618 -27.77570 -27.58098 -26.56708 -23.31649 -22.90008 -21.86929 -21.27055 -20.79030 -19.25439 -18.63262 -18.19007 -17.79271 -17.74865 -17.46109 -16.48244 -16.33594 -15.99548 -15.56808 -15.42619 -15.10435 -15.04219 -14.86460 -14.55265 -14.50401 -13.98688 -13.78107 -13.72231 -13.30351 -13.16533 -13.01939 -12.81563 -12.68705 -12.54566 -12.47223 -12.31473 -12.11070 -11.99519 -11.64732 -11.54657 -11.53760 -11.38659 -10.98036 -10.91785 -10.14234 -9.40933 -9.30654 -8.85778 -6.43948 0.57462 0.79946 0.89610 1.28816 1.40202 1.50309 1.65435 1.98188 2.15438 2.40896 2.65436 2.88828 3.01686 3.50969 3.54857 3.68916 3.97146 4.11322 4.18530 4.27009 4.38844 4.45123 4.52606 4.55099 4.55879 4.70183 4.77042 4.85182 4.88977 4.92221 4.95341 4.99748 5.15876 5.26397 5.28577 5.31799 5.37522 5.51466 5.66604 5.85958 5.94222 6.04737 6.18615 6.28649 6.42675 6.48332 6.80226 6.91475 7.27582 8.21568 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.004244 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.821410 B = 6595.622507 C = 7766.173322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.140 4.140 4 C 0.059 3.941 5 O -0.358 6.358 6 C 0.474 3.526 7 O -0.482 6.482 8 C 0.091 3.909 9 H 0.097 0.903 10 N -0.706 5.706 11 C 0.511 3.489 12 O -0.562 6.562 13 C -0.071 4.071 14 C -0.175 4.175 15 C -0.081 4.081 16 C -0.233 4.233 17 C -0.091 4.091 18 C -0.257 4.257 19 C 0.085 3.915 20 C -0.467 4.467 21 H 0.062 0.938 22 C 0.052 3.948 23 N -0.848 5.848 24 Si 0.960 3.040 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.252 1.252 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.155 0.845 36 H 0.422 0.578 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -1.533 -17.436 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.197 4.197 4 C -0.014 4.014 5 O -0.275 6.275 6 C 0.313 3.687 7 O -0.364 6.364 8 C -0.017 4.017 9 H 0.115 0.885 10 N -0.367 5.367 11 C 0.300 3.700 12 O -0.438 6.438 13 C -0.110 4.110 14 C -0.177 4.177 15 C -0.099 4.099 16 C -0.251 4.251 17 C -0.109 4.109 18 C -0.276 4.276 19 C 0.082 3.918 20 C -0.497 4.497 21 H 0.080 0.920 22 C -0.163 4.163 23 N -0.475 5.475 24 Si 0.785 3.215 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.175 1.175 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.172 0.828 36 H 0.265 0.735 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.805 -1.649 -16.922 17.232 hybrid contribution -0.090 0.225 0.997 1.026 sum -2.895 -1.423 -15.925 16.248 Atomic orbital electron populations 1.21944 0.90246 1.03641 1.04666 1.22113 0.99473 0.96710 0.91012 1.21890 1.01323 0.92384 1.04080 1.24750 1.03455 0.77618 0.95608 1.87273 1.77276 1.34759 1.28189 1.24122 0.79351 0.83084 0.82190 1.90708 1.28840 1.50253 1.66598 1.22276 0.90720 0.93748 0.94950 0.88521 1.45937 1.13183 1.67384 1.10164 1.21466 0.90365 0.76239 0.81947 1.90714 1.27802 1.53112 1.72185 1.20344 0.95840 1.03206 0.91634 1.19532 1.09411 0.93422 0.95292 1.20892 0.96858 0.95756 0.96384 1.20849 1.10757 0.99221 0.94315 1.20972 0.97932 0.92866 0.99110 1.21154 1.11066 0.97425 0.97942 1.17730 0.89590 0.92632 0.91804 1.19309 1.36707 0.96248 0.97408 0.92028 1.26709 0.93476 0.94274 1.01802 1.69727 1.35308 1.05311 1.37128 0.85565 0.77814 0.80155 0.78004 1.19683 1.20276 1.17532 0.92024 0.87680 0.90759 0.91942 0.87858 0.92886 0.87379 0.82782 0.73529 0.86178 0.87580 0.86096 0.85658 0.86106 0.89029 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.12 71.98 0.51 -1.07 16 2 C -0.09 -1.38 1.09 -51.22 -0.06 -1.43 16 3 C -0.14 -1.84 8.32 71.98 0.60 -1.24 16 4 C 0.06 0.68 7.04 72.45 0.51 1.19 16 5 O -0.36 -8.34 11.17 -55.08 -0.62 -8.96 16 6 C 0.47 15.01 8.13 71.49 0.58 15.59 16 7 O -0.48 -20.38 18.00 21.54 0.39 -19.99 16 8 C 0.09 2.50 2.97 45.00 0.13 2.64 16 9 H 0.10 3.27 7.25 -2.38 -0.02 3.25 16 10 N -0.71 -20.46 4.66 -442.48 -2.06 -22.53 16 11 C 0.51 20.49 7.43 87.66 0.65 21.14 16 12 O -0.56 -29.00 15.74 -3.02 -0.05 -29.05 16 13 C -0.07 -2.66 5.19 29.10 0.15 -2.51 16 14 C -0.17 -8.12 4.43 -19.40 -0.09 -8.21 16 15 C -0.08 -3.45 9.66 22.22 0.21 -3.23 16 16 C -0.23 -9.74 10.05 22.46 0.23 -9.51 16 17 C -0.09 -4.05 10.02 22.22 0.22 -3.83 16 18 C -0.26 -13.03 7.17 22.73 0.16 -12.87 16 19 C 0.08 4.46 5.10 -21.29 -0.11 4.36 16 20 C -0.47 -25.92 8.55 23.46 0.20 -25.72 16 21 H 0.06 3.62 7.00 -2.91 -0.02 3.60 16 22 C 0.05 2.78 5.41 85.26 0.46 3.24 16 23 N -0.85 -46.20 13.93 21.82 0.30 -45.90 16 24 Si 0.96 43.52 24.52 68.60 1.68 45.20 16 25 H -0.27 -12.09 6.71 99.48 0.67 -11.42 16 26 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.25 -11.59 6.86 99.48 0.68 -10.91 16 28 H 0.06 0.91 7.74 -2.39 -0.02 0.89 16 29 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.07 0.67 7.04 -2.39 -0.02 0.66 16 31 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.87 7.77 -2.38 -0.02 0.85 16 35 H 0.15 0.61 7.82 -2.39 -0.02 0.59 16 36 H 0.42 8.74 5.84 -92.70 -0.54 8.20 16 37 H 0.12 3.45 8.05 -2.39 -0.02 3.43 16 38 H 0.11 3.91 7.13 -2.39 -0.02 3.89 16 39 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.09 4.67 4.77 -2.91 -0.01 4.66 16 43 H 0.29 14.33 8.30 -92.70 -0.77 13.56 16 Total: -1.00 -80.60 351.77 4.46 -76.14 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.44 Total: 26.55 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.38 Total: -21.47 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.76 Total: -68.42 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -0.28 Total: -58.00 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.68 Total: 45.20 kcal Total: -80.60 4.46 -76.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837634704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.815 kcal (2) G-P(sol) polarization free energy of solvation -80.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds