Wall clock time and date at job start Tue Mar 31 2020 11:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.62505 * 2 1 4 4 C 1.54367 * 110.70004 * 236.71302 * 2 1 3 5 5 O 1.45948 * 105.06662 * 223.78899 * 4 2 1 6 6 C 1.34561 * 108.40073 * 32.44928 * 5 4 2 7 7 O 1.20830 * 125.94240 * 146.70618 * 6 5 4 8 8 C 1.51507 * 108.11165 * 326.65573 * 6 5 4 9 9 H 1.08992 * 110.50386 * 139.21875 * 8 6 5 10 10 N 1.46494 * 110.40579 * 261.60047 * 8 6 5 11 11 C 1.34781 * 119.99708 * 270.20235 * 10 8 6 12 12 O 1.21279 * 119.99859 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99695 * 179.97438 * 11 10 8 14 14 C 1.50707 * 109.46963 * 180.02562 * 13 11 10 15 15 C 1.37633 * 120.12549 * 264.97840 * 14 13 11 16 16 C 1.38616 * 120.24772 * 180.02562 * 15 14 13 17 17 C 1.38658 * 120.50128 * 359.97438 * 16 15 14 18 18 C 1.37595 * 120.24819 * 0.02562 * 17 16 15 19 19 C 1.40697 * 120.12849 * 84.99938 * 14 13 11 20 20 C 1.41401 * 120.24131 * 0.02562 * 19 14 13 21 21 H 1.07995 * 120.00027 * 334.06047 * 20 19 14 22 22 C 1.39948 * 119.99760 * 154.05773 * 20 19 14 23 23 N 1.30820 * 120.00005 * 343.62870 * 22 20 19 24 24 Si 1.86797 * 120.00056 * 163.61961 * 22 20 19 25 25 H 1.48503 * 109.46957 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46997 * 120.00368 * 24 22 20 27 27 H 1.48497 * 109.47197 * 240.00502 * 24 22 20 28 28 H 1.09000 * 109.47596 * 296.90769 * 1 2 3 29 29 H 1.09003 * 109.47229 * 56.91060 * 1 2 3 30 30 H 1.09002 * 109.47755 * 176.90726 * 1 2 3 31 31 H 1.08996 * 109.47180 * 183.08972 * 3 2 1 32 32 H 1.09001 * 109.46604 * 303.09042 * 3 2 1 33 33 H 1.08999 * 109.46972 * 63.08770 * 3 2 1 34 34 H 1.08992 * 110.32665 * 342.69548 * 4 2 1 35 35 H 1.09005 * 110.31788 * 104.79666 * 4 2 1 36 36 H 0.96999 * 120.00365 * 90.20317 * 10 8 6 37 37 H 1.08994 * 109.47456 * 60.00626 * 13 11 10 38 38 H 1.09003 * 109.47111 * 300.00111 * 13 11 10 39 39 H 1.08001 * 119.87725 * 0.02562 * 15 14 13 40 40 H 1.07997 * 119.75069 * 179.97438 * 16 15 14 41 41 H 1.08000 * 119.87966 * 180.27631 * 17 16 15 42 42 H 1.08001 * 120.12843 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00210 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0689 1.4319 0.0000 4 6 2.0756 -0.7925 -1.2071 5 8 3.1614 -1.6052 -0.6679 6 6 2.8553 -1.9357 0.6001 7 8 3.1514 -2.9672 1.1553 8 6 2.0759 -0.7889 1.2107 9 1 1.2548 -1.1668 1.8196 10 7 2.9597 0.0579 2.0156 11 6 3.1416 -0.2098 3.3240 12 8 2.5740 -1.1521 3.8347 13 6 4.0512 0.6610 4.1518 14 6 4.0812 0.1510 5.5697 15 6 3.2434 0.6940 6.5170 16 6 3.2692 0.2272 7.8219 17 6 4.1369 -0.7904 8.1883 18 6 4.9834 -1.3480 7.2579 19 6 4.9662 -0.8817 5.9301 20 6 5.8322 -1.4465 4.9656 21 1 5.5654 -1.4209 3.9194 22 6 7.0352 -2.0386 5.3666 23 7 7.5167 -1.7986 6.5591 24 14 7.9532 -3.1718 4.1994 25 1 7.2043 -3.2780 2.9214 26 1 9.3062 -2.6197 3.9354 27 1 8.0790 -4.5181 4.8132 28 1 -0.3634 0.4651 0.9164 29 1 -0.3634 0.5611 -0.8610 30 1 -0.3635 -1.0261 -0.0554 31 1 3.1573 1.4105 -0.0554 32 1 1.6718 1.9696 -0.8610 33 1 1.7616 1.9358 0.9164 34 1 1.2967 -1.4303 -1.6246 35 1 2.4536 -0.1100 -1.9684 36 1 3.4140 0.8113 1.6070 37 1 3.6809 1.6861 4.1419 38 1 5.0581 0.6343 3.7351 39 1 2.5632 1.4868 6.2426 40 1 2.6086 0.6594 8.5589 41 1 4.1455 -1.1495 9.2068 42 1 5.6582 -2.1408 7.5452 43 1 8.3503 -2.2092 6.8372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837634713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:35 Heat of formation + Delta-G solvation = -95.587675 kcal Electronic energy + Delta-G solvation = -27142.622566 eV Core-core repulsion = 23345.724759 eV Total energy + Delta-G solvation = -3796.897807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53446 -39.04655 -37.74628 -37.29145 -35.81181 -33.56825 -33.27772 -31.67066 -29.41899 -28.44722 -27.80690 -26.92560 -26.23893 -24.86363 -21.65137 -20.89288 -20.43752 -20.22688 -19.33737 -17.47751 -17.07671 -17.05619 -16.56796 -16.33604 -15.39153 -15.12791 -14.72381 -14.42569 -14.29097 -14.09966 -13.97759 -13.56337 -13.34269 -13.15106 -12.91029 -12.53399 -12.50004 -12.42518 -11.79541 -11.63184 -11.62737 -11.49088 -11.38030 -11.15273 -11.03057 -10.92536 -10.74040 -10.62635 -10.49738 -10.32019 -9.44500 -9.34195 -9.24783 -9.10236 -8.81122 -7.27694 -7.24995 -6.68621 -4.28759 1.87007 2.81732 2.95996 3.11027 3.14601 3.24121 3.26570 3.32368 3.60984 3.73072 4.01192 4.02292 4.26565 4.31019 4.71468 4.74289 4.98206 5.03540 5.18162 5.22075 5.36612 5.39474 5.49416 5.59519 5.73589 5.79088 5.81126 6.01119 6.12705 6.30224 6.42541 6.52427 6.54205 6.55983 6.82856 7.14576 7.33741 7.46477 7.47084 7.66260 7.76548 7.96519 8.12425 8.17425 8.36249 8.69607 8.75972 8.97328 9.06225 10.25417 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.004793 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.172963 B = 5840.497699 C = 7336.930990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.061 3.939 5 O -0.353 6.353 6 C 0.466 3.534 7 O -0.417 6.417 8 C 0.098 3.902 9 H 0.126 0.874 10 N -0.728 5.728 11 C 0.512 3.488 12 O -0.503 6.503 13 C -0.067 4.067 14 C -0.185 4.185 15 C -0.079 4.079 16 C -0.241 4.241 17 C -0.106 4.106 18 C -0.158 4.158 19 C 0.130 3.870 20 C -0.453 4.453 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.795 5.795 24 Si 0.899 3.101 25 H -0.259 1.259 26 H -0.275 1.275 27 H -0.271 1.271 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.403 0.597 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 7.947 -15.566 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.014 4.014 5 O -0.271 6.271 6 C 0.301 3.699 7 O -0.294 6.294 8 C -0.010 4.010 9 H 0.144 0.856 10 N -0.389 5.389 11 C 0.299 3.701 12 O -0.374 6.374 13 C -0.106 4.106 14 C -0.187 4.187 15 C -0.098 4.098 16 C -0.260 4.260 17 C -0.125 4.125 18 C -0.177 4.177 19 C 0.127 3.873 20 C -0.483 4.483 21 H 0.092 0.908 22 C -0.139 4.139 23 N -0.420 5.420 24 Si 0.723 3.277 25 H -0.183 1.183 26 H -0.200 1.200 27 H -0.196 1.196 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.241 0.759 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.659 6.599 -14.844 18.899 hybrid contribution 0.670 -0.211 -0.661 0.965 sum -8.988 6.388 -15.505 19.026 Atomic orbital electron populations 1.21847 0.91498 1.02863 1.03329 1.22077 0.97922 0.97049 0.93806 1.21851 1.01326 0.93379 1.03516 1.24207 0.88161 0.93176 0.95810 1.87317 1.42782 1.67144 1.29863 1.23854 0.77613 0.87134 0.81274 1.90781 1.48289 1.25653 1.64674 1.22120 0.94873 0.90523 0.93511 0.85586 1.46251 1.49995 1.32650 1.09970 1.21523 0.81949 0.85844 0.80745 1.90721 1.46835 1.28741 1.71113 1.20248 0.99112 0.96840 0.94437 1.19013 1.05435 1.02227 0.92039 1.20273 0.97323 0.98624 0.93555 1.20288 1.05474 1.04492 0.95785 1.20673 0.96966 0.97320 0.97520 1.21293 1.00581 1.02042 0.93831 1.17341 0.89410 0.88037 0.92463 1.19513 1.01820 1.32101 0.94861 0.90823 1.25856 0.97559 0.94984 0.95505 1.69824 1.18090 1.35088 1.19010 0.86396 0.79080 0.80498 0.81698 1.18298 1.20011 1.19608 0.91112 0.91275 0.91817 0.91591 0.91142 0.90735 0.89575 0.86967 0.75875 0.90382 0.88455 0.89790 0.89692 0.89597 0.86551 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.30 37.16 0.31 -0.53 16 2 C -0.11 -0.84 1.09 -153.02 -0.17 -1.01 16 3 C -0.14 -0.86 7.14 37.16 0.27 -0.59 16 4 C 0.06 0.47 7.05 37.87 0.27 0.73 16 5 O -0.35 -4.75 11.17 -39.73 -0.44 -5.19 16 6 C 0.47 7.73 8.14 36.40 0.30 8.03 16 7 O -0.42 -9.11 18.00 -18.32 -0.33 -9.44 16 8 C 0.10 1.30 3.02 -67.92 -0.21 1.09 16 9 H 0.13 1.84 7.15 -51.93 -0.37 1.47 16 10 N -0.73 -10.42 4.58 -53.79 -0.25 -10.67 16 11 C 0.51 9.99 7.46 -10.98 -0.08 9.91 16 12 O -0.50 -12.26 15.68 5.56 0.09 -12.18 16 13 C -0.07 -1.30 5.18 -29.03 -0.15 -1.45 16 14 C -0.19 -4.51 4.43 -103.91 -0.46 -4.97 16 15 C -0.08 -1.84 9.66 -39.66 -0.38 -2.22 16 16 C -0.24 -5.68 10.05 -39.29 -0.39 -6.07 16 17 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 18 C -0.16 -4.34 8.68 -38.87 -0.34 -4.68 16 19 C 0.13 3.57 5.56 -106.82 -0.59 2.97 16 20 C -0.45 -12.46 8.14 -37.74 -0.31 -12.77 16 21 H 0.07 2.02 6.68 -52.49 -0.35 1.67 16 22 C 0.08 2.06 5.16 -17.34 -0.09 1.97 16 23 N -0.79 -21.12 10.97 55.55 0.61 -20.51 16 24 Si 0.90 20.18 29.59 -169.99 -5.03 15.15 16 25 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 7.00 -51.93 -0.36 0.04 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 34 H 0.09 0.51 7.77 -51.93 -0.40 0.11 16 35 H 0.11 0.56 7.82 -51.93 -0.41 0.15 16 36 H 0.40 4.40 5.97 -40.82 -0.24 4.15 16 37 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 39 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.29 6.22 -52.49 -0.33 2.96 16 43 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -35.50 356.90 -8.15 -43.65 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.75 Total: 6.42 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.43 Total: -12.62 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.36 Total: -31.18 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.69 Total: -26.80 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.50 -8.15 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837634713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.938 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds