Wall clock time and date at job start Tue Mar 31 2020 11:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.62505 * 2 1 4 4 C 1.54367 * 110.70004 * 236.71302 * 2 1 3 5 5 O 1.45948 * 105.06662 * 223.78899 * 4 2 1 6 6 C 1.34561 * 108.40073 * 32.44928 * 5 4 2 7 7 O 1.20830 * 125.94240 * 146.70618 * 6 5 4 8 8 C 1.51507 * 108.11165 * 326.65573 * 6 5 4 9 9 H 1.08992 * 110.50386 * 139.21875 * 8 6 5 10 10 N 1.46494 * 110.40579 * 261.60047 * 8 6 5 11 11 C 1.34781 * 119.99708 * 270.20235 * 10 8 6 12 12 O 1.21279 * 119.99859 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99695 * 179.97438 * 11 10 8 14 14 C 1.50707 * 109.46963 * 180.02562 * 13 11 10 15 15 C 1.37633 * 120.12549 * 264.97840 * 14 13 11 16 16 C 1.38616 * 120.24772 * 180.02562 * 15 14 13 17 17 C 1.38658 * 120.50128 * 359.97438 * 16 15 14 18 18 C 1.37595 * 120.24819 * 0.02562 * 17 16 15 19 19 C 1.40697 * 120.12849 * 84.99938 * 14 13 11 20 20 C 1.41401 * 120.24131 * 0.02562 * 19 14 13 21 21 H 1.07995 * 120.00027 * 334.06047 * 20 19 14 22 22 C 1.39948 * 119.99760 * 154.05773 * 20 19 14 23 23 N 1.30820 * 120.00005 * 343.62870 * 22 20 19 24 24 Si 1.86797 * 120.00056 * 163.61961 * 22 20 19 25 25 H 1.48503 * 109.46957 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46997 * 120.00368 * 24 22 20 27 27 H 1.48497 * 109.47197 * 240.00502 * 24 22 20 28 28 H 1.09000 * 109.47596 * 296.90769 * 1 2 3 29 29 H 1.09003 * 109.47229 * 56.91060 * 1 2 3 30 30 H 1.09002 * 109.47755 * 176.90726 * 1 2 3 31 31 H 1.08996 * 109.47180 * 183.08972 * 3 2 1 32 32 H 1.09001 * 109.46604 * 303.09042 * 3 2 1 33 33 H 1.08999 * 109.46972 * 63.08770 * 3 2 1 34 34 H 1.08992 * 110.32665 * 342.69548 * 4 2 1 35 35 H 1.09005 * 110.31788 * 104.79666 * 4 2 1 36 36 H 0.96999 * 120.00365 * 90.20317 * 10 8 6 37 37 H 1.08994 * 109.47456 * 60.00626 * 13 11 10 38 38 H 1.09003 * 109.47111 * 300.00111 * 13 11 10 39 39 H 1.08001 * 119.87725 * 0.02562 * 15 14 13 40 40 H 1.07997 * 119.75069 * 179.97438 * 16 15 14 41 41 H 1.08000 * 119.87966 * 180.27631 * 17 16 15 42 42 H 1.08001 * 120.12843 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00210 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0689 1.4319 0.0000 4 6 2.0756 -0.7925 -1.2071 5 8 3.1614 -1.6052 -0.6679 6 6 2.8553 -1.9357 0.6001 7 8 3.1514 -2.9672 1.1553 8 6 2.0759 -0.7889 1.2107 9 1 1.2548 -1.1668 1.8196 10 7 2.9597 0.0579 2.0156 11 6 3.1416 -0.2098 3.3240 12 8 2.5740 -1.1521 3.8347 13 6 4.0512 0.6610 4.1518 14 6 4.0812 0.1510 5.5697 15 6 3.2434 0.6940 6.5170 16 6 3.2692 0.2272 7.8219 17 6 4.1369 -0.7904 8.1883 18 6 4.9834 -1.3480 7.2579 19 6 4.9662 -0.8817 5.9301 20 6 5.8322 -1.4465 4.9656 21 1 5.5654 -1.4209 3.9194 22 6 7.0352 -2.0386 5.3666 23 7 7.5167 -1.7986 6.5591 24 14 7.9532 -3.1718 4.1994 25 1 7.2043 -3.2780 2.9214 26 1 9.3062 -2.6197 3.9354 27 1 8.0790 -4.5181 4.8132 28 1 -0.3634 0.4651 0.9164 29 1 -0.3634 0.5611 -0.8610 30 1 -0.3635 -1.0261 -0.0554 31 1 3.1573 1.4105 -0.0554 32 1 1.6718 1.9696 -0.8610 33 1 1.7616 1.9358 0.9164 34 1 1.2967 -1.4303 -1.6246 35 1 2.4536 -0.1100 -1.9684 36 1 3.4140 0.8113 1.6070 37 1 3.6809 1.6861 4.1419 38 1 5.0581 0.6343 3.7351 39 1 2.5632 1.4868 6.2426 40 1 2.6086 0.6594 8.5589 41 1 4.1455 -1.1495 9.2068 42 1 5.6582 -2.1408 7.5452 43 1 8.3503 -2.2092 6.8372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837634713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:34 Heat of formation + Delta-G solvation = -118.760276 kcal Electronic energy + Delta-G solvation = -27143.627406 eV Core-core repulsion = 23345.724759 eV Total energy + Delta-G solvation = -3797.902647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.60782 -40.61406 -39.15885 -38.97928 -36.88783 -35.53318 -34.47724 -33.39553 -31.36893 -29.67235 -28.56163 -27.74132 -27.56646 -26.73083 -23.01569 -22.82081 -21.89211 -21.24041 -20.77786 -19.13591 -18.56490 -18.17775 -17.76186 -17.72884 -17.26951 -16.45686 -16.17970 -16.04183 -15.47107 -15.35101 -15.04892 -14.87484 -14.84894 -14.50403 -14.42139 -13.85847 -13.54367 -13.42448 -13.27552 -12.99605 -12.93846 -12.81554 -12.74528 -12.58263 -12.42305 -12.28446 -12.18698 -12.08105 -11.64147 -11.53291 -11.33596 -11.23818 -11.06455 -10.88764 -10.12781 -9.23717 -9.18000 -8.64322 -6.32715 0.59720 0.95911 1.11918 1.28520 1.41710 1.46281 1.66932 2.04020 2.15008 2.40116 2.74548 2.90207 3.04935 3.56885 3.70160 3.73562 4.03487 4.15727 4.22853 4.39851 4.45911 4.54463 4.55694 4.60357 4.71176 4.78480 4.82712 4.88933 4.93512 5.03550 5.04772 5.17000 5.28154 5.31890 5.35355 5.35841 5.53325 5.54363 5.75562 6.01694 6.14685 6.20253 6.21028 6.39934 6.48191 6.72588 6.96411 7.09111 7.30010 8.32170 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.004793 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.172963 B = 5840.497699 C = 7336.930990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.146 4.146 4 C 0.053 3.947 5 O -0.365 6.365 6 C 0.464 3.536 7 O -0.488 6.488 8 C 0.095 3.905 9 H 0.109 0.891 10 N -0.706 5.706 11 C 0.513 3.487 12 O -0.561 6.561 13 C -0.067 4.067 14 C -0.190 4.190 15 C -0.087 4.087 16 C -0.240 4.240 17 C -0.117 4.117 18 C -0.194 4.194 19 C 0.095 3.905 20 C -0.482 4.482 21 H 0.061 0.939 22 C 0.042 3.958 23 N -0.821 5.821 24 Si 0.961 3.039 25 H -0.278 1.278 26 H -0.251 1.251 27 H -0.266 1.266 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.422 0.578 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 10.872 -17.939 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C -0.203 4.203 4 C -0.019 4.019 5 O -0.283 6.283 6 C 0.303 3.697 7 O -0.370 6.370 8 C -0.013 4.013 9 H 0.127 0.873 10 N -0.366 5.366 11 C 0.302 3.698 12 O -0.437 6.437 13 C -0.106 4.106 14 C -0.191 4.191 15 C -0.105 4.105 16 C -0.259 4.259 17 C -0.135 4.135 18 C -0.213 4.213 19 C 0.093 3.907 20 C -0.512 4.512 21 H 0.079 0.921 22 C -0.173 4.173 23 N -0.448 5.448 24 Si 0.783 3.217 25 H -0.203 1.203 26 H -0.175 1.175 27 H -0.191 1.191 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.169 0.831 36 H 0.264 0.736 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.033 9.608 -17.277 22.639 hybrid contribution 0.959 -1.003 0.025 1.388 sum -10.074 8.604 -17.252 21.752 Atomic orbital electron populations 1.21888 0.89759 1.03223 1.04535 1.22146 0.99093 0.97454 0.90423 1.21939 1.01408 0.91875 1.05106 1.24782 0.87504 0.93579 0.96068 1.87281 1.44628 1.67899 1.28443 1.24444 0.76269 0.86797 0.82219 1.90735 1.51271 1.28573 1.66447 1.22309 0.93534 0.90340 0.95160 0.87335 1.45953 1.49480 1.32741 1.08475 1.21466 0.81204 0.84875 0.82269 1.90705 1.49284 1.31007 1.72681 1.20289 0.99350 0.99069 0.91880 1.19536 1.03984 1.00834 0.94791 1.20753 0.97310 0.99262 0.93170 1.20752 1.04807 1.03384 0.96918 1.20959 0.96740 0.97713 0.98096 1.21286 1.02082 1.02929 0.95040 1.17724 0.90807 0.89521 0.92653 1.19562 1.02991 1.34351 0.94334 0.92104 1.26496 0.97993 0.95832 0.96979 1.69859 1.18790 1.35962 1.20190 0.85485 0.78590 0.78894 0.78719 1.20312 1.17536 1.19123 0.91704 0.87975 0.92262 0.91626 0.87765 0.90830 0.87493 0.83095 0.73595 0.85648 0.88733 0.85863 0.86362 0.87643 0.88782 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.30 71.98 0.60 -0.59 16 2 C -0.09 -1.13 1.09 -51.22 -0.06 -1.19 16 3 C -0.15 -1.09 7.14 71.98 0.51 -0.58 16 4 C 0.05 0.63 7.05 72.45 0.51 1.14 16 5 O -0.36 -9.44 11.17 -55.06 -0.61 -10.06 16 6 C 0.46 15.82 8.14 71.49 0.58 16.40 16 7 O -0.49 -22.81 18.00 21.54 0.39 -22.42 16 8 C 0.09 2.46 3.02 45.00 0.14 2.60 16 9 H 0.11 3.26 7.15 -2.39 -0.02 3.25 16 10 N -0.71 -19.56 4.58 -442.49 -2.03 -21.59 16 11 C 0.51 20.12 7.46 87.66 0.65 20.78 16 12 O -0.56 -28.37 15.68 -3.03 -0.05 -28.42 16 13 C -0.07 -2.53 5.18 29.10 0.15 -2.38 16 14 C -0.19 -9.25 4.43 -19.40 -0.09 -9.33 16 15 C -0.09 -3.87 9.66 22.22 0.21 -3.66 16 16 C -0.24 -10.91 10.05 22.46 0.23 -10.68 16 17 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 18 C -0.19 -11.10 8.68 22.73 0.20 -10.90 16 19 C 0.10 5.42 5.56 -21.29 -0.12 5.31 16 20 C -0.48 -27.84 8.14 23.46 0.19 -27.65 16 21 H 0.06 3.54 6.68 -2.91 -0.02 3.52 16 22 C 0.04 2.28 5.16 85.26 0.44 2.72 16 23 N -0.82 -45.40 10.97 21.83 0.24 -45.16 16 24 Si 0.96 43.13 29.59 68.60 2.03 45.16 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 26 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.58 8.09 -2.39 -0.02 0.57 16 31 H 0.06 0.52 7.00 -2.39 -0.02 0.51 16 32 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.07 0.62 7.79 -2.39 -0.02 0.60 16 34 H 0.11 0.87 7.77 -2.39 -0.02 0.85 16 35 H 0.15 0.68 7.82 -2.38 -0.02 0.66 16 36 H 0.42 8.26 5.97 -92.71 -0.55 7.71 16 37 H 0.13 3.49 8.05 -2.39 -0.02 3.47 16 38 H 0.09 3.67 7.06 -2.39 -0.02 3.65 16 39 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 40 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.09 5.66 6.22 -2.91 -0.02 5.64 16 43 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 Total: -1.00 -85.25 356.90 4.83 -80.42 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.49 Total: 25.72 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.38 Total: -23.65 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -1.79 Total: -66.75 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -0.27 Total: -60.89 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -85.25 4.83 -80.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837634713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.342 kcal (2) G-P(sol) polarization free energy of solvation -85.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds