Wall clock time and date at job start Tue Mar 31 2020 11:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99870 * 2 1 4 4 C 1.52997 * 109.46983 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47034 * 240.00293 * 3 2 1 6 6 C 1.50692 * 109.47024 * 120.00104 * 3 2 1 7 7 O 1.20821 * 120.00466 * 0.02562 * 6 3 2 8 8 O 1.34232 * 119.99945 * 179.97438 * 6 3 2 9 9 C 1.45200 * 117.00456 * 180.02562 * 8 6 3 10 10 C 1.50693 * 109.47507 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08000 * 119.99597 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00244 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47116 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47687 * 299.99786 * 4 3 2 32 32 H 1.08995 * 109.47311 * 60.00652 * 4 3 2 33 33 H 1.09001 * 109.47264 * 300.00258 * 5 3 2 34 34 H 1.09005 * 109.47672 * 59.99882 * 5 3 2 35 35 H 1.08997 * 109.47719 * 179.97438 * 5 3 2 36 36 H 1.09005 * 109.46837 * 60.00183 * 9 8 6 37 37 H 1.09001 * 109.46863 * 300.01059 * 9 8 6 38 38 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 39 39 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 40 40 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 41 41 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 43 43 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9299 1.3849 1.2304 7 8 2.9354 0.4753 2.0255 8 8 3.6963 2.4663 1.4426 9 6 4.5056 2.4746 2.6481 10 6 5.2921 3.7582 2.7165 11 8 5.1811 4.5850 1.8360 12 7 6.1180 3.9880 3.7565 13 6 6.7761 5.2100 3.8660 14 6 7.2107 5.8697 2.7164 15 6 7.8613 7.0640 2.8162 16 6 8.0845 7.6366 4.0837 17 6 8.7526 8.8750 4.1949 18 1 9.4081 9.0618 5.0327 19 6 8.5657 9.8607 3.2198 20 7 7.8413 9.6041 2.1605 21 14 9.3499 11.5430 3.4298 22 1 10.8252 11.3947 3.5118 23 1 9.0019 12.4000 2.2680 24 1 8.8456 12.1721 4.6769 25 6 7.6427 6.9644 5.2403 26 6 6.9981 5.7683 5.1249 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.6142 3.4120 -0.0011 31 1 0.4429 2.4101 -0.8908 32 1 0.4423 2.4105 0.8891 33 1 3.6514 0.5577 -1.2494 34 1 2.3164 1.3285 -2.1393 35 1 3.4878 2.3303 -1.2496 36 1 5.1920 1.6280 2.6307 37 1 3.8575 2.3990 3.5212 38 1 6.2539 3.3019 4.4286 39 1 7.0353 5.4314 1.7451 40 1 8.2015 7.5713 1.9254 41 1 7.7120 10.2873 1.4841 42 1 7.8144 7.3951 6.2156 43 1 6.6591 5.2514 6.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837863087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:18 Heat of formation + Delta-G solvation = -77.872573 kcal Electronic energy + Delta-G solvation = -25398.795789 eV Core-core repulsion = 21602.666167 eV Total energy + Delta-G solvation = -3796.129623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01283 -39.63668 -37.63861 -37.03313 -36.23280 -34.48369 -32.97432 -31.37669 -29.85838 -29.42894 -28.16586 -27.72455 -25.02945 -24.36063 -22.05311 -21.46800 -20.98019 -19.76275 -18.94858 -17.61954 -17.45207 -17.30438 -16.77691 -16.53057 -16.00716 -15.35135 -15.15810 -14.92339 -14.32405 -14.12954 -13.92456 -13.40158 -13.16517 -12.94584 -12.70274 -12.57219 -12.52379 -12.27335 -12.12082 -12.10364 -11.76214 -11.55480 -11.49688 -11.16708 -11.10382 -10.99723 -10.86060 -10.55586 -10.51705 -9.98085 -9.92537 -9.81796 -9.51627 -9.05080 -8.79931 -7.55934 -6.93849 -6.61506 -4.35861 1.73426 1.99541 2.40999 2.51037 2.96408 3.06406 3.09366 3.11500 3.27865 3.66454 3.97358 4.18710 4.42389 4.57739 4.66896 4.69630 4.86183 4.98007 5.01048 5.02742 5.29214 5.35283 5.44968 5.47463 5.59364 5.63217 5.86559 5.91699 6.09443 6.13887 6.27744 6.34947 6.37036 6.71331 6.93066 7.01391 7.16429 7.25662 7.51453 7.60533 7.63810 7.91333 8.06469 8.11858 8.29853 8.61415 8.66477 8.90871 8.97592 10.29358 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.002342 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.771380 B =11954.378707 C =12688.190938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 C -0.023 4.023 4 C -0.148 4.148 5 C -0.140 4.140 6 C 0.473 3.527 7 O -0.507 6.507 8 O -0.324 6.324 9 C 0.050 3.950 10 C 0.498 3.502 11 O -0.504 6.504 12 N -0.647 5.647 13 C 0.002 3.998 14 C -0.092 4.092 15 C -0.145 4.145 16 C 0.101 3.899 17 C -0.462 4.462 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.806 5.806 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.204 4.204 26 C -0.110 4.110 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.397 0.603 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.279 0.721 42 H 0.097 0.903 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 -15.402 -4.135 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.153 4.153 3 C -0.024 4.024 4 C -0.205 4.205 5 C -0.197 4.197 6 C 0.315 3.685 7 O -0.394 6.394 8 O -0.239 6.239 9 C -0.027 4.027 10 C 0.283 3.717 11 O -0.378 6.378 12 N -0.292 5.292 13 C -0.090 4.090 14 C -0.112 4.112 15 C -0.165 4.165 16 C 0.099 3.901 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.147 4.147 20 N -0.433 5.433 21 Si 0.741 3.259 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.224 4.224 26 C -0.131 4.131 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.230 0.770 39 H 0.126 0.874 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.700 -14.940 -4.750 18.980 hybrid contribution 0.291 0.243 0.720 0.814 sum -10.408 -14.696 -4.030 18.454 Atomic orbital electron populations 1.24048 0.95749 1.02602 0.99587 1.22546 0.95791 0.96295 1.00657 1.19579 0.94688 0.96472 0.91690 1.21997 0.98457 0.97063 1.02996 1.21858 0.99220 1.03799 0.94871 1.23682 0.78049 0.79457 0.87302 1.90652 1.64007 1.38505 1.46263 1.86568 1.52829 1.42128 1.42353 1.22738 0.94732 0.98179 0.87083 1.19925 0.80529 0.87628 0.83626 1.90763 1.63987 1.45928 1.37123 1.42772 1.43962 1.16550 1.25927 1.17232 1.08188 0.89099 0.94498 1.20642 0.97829 0.96558 0.96166 1.21304 1.02210 0.93827 0.99127 1.17742 0.89735 0.91736 0.90913 1.19458 1.24710 0.97896 1.07210 0.90616 1.25908 0.93779 1.01063 0.93951 1.69779 1.30903 1.35007 1.07589 0.86241 0.80080 0.80937 0.78623 1.19045 1.20402 1.19123 1.20693 1.06507 0.97238 0.97983 1.20074 1.02498 0.96579 0.93902 0.87884 0.87568 0.86548 0.90227 0.90547 0.91751 0.91897 0.90736 0.90255 0.88448 0.88370 0.76967 0.87432 0.85133 0.90950 0.88436 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 13.70 29.01 0.40 -0.95 16 2 C -0.13 -1.20 8.00 -36.03 -0.29 -1.48 16 3 C -0.02 -0.23 0.93 -156.82 -0.15 -0.37 16 4 C -0.15 -1.29 7.06 37.16 0.26 -1.02 16 5 C -0.14 -1.20 8.39 37.16 0.31 -0.89 16 6 C 0.47 6.07 6.55 36.00 0.24 6.31 16 7 O -0.51 -7.35 15.78 -18.75 -0.30 -7.65 16 8 O -0.32 -4.66 9.56 -45.91 -0.44 -5.10 16 9 C 0.05 0.67 5.95 36.00 0.21 0.88 16 10 C 0.50 8.70 7.74 -10.99 -0.09 8.62 16 11 O -0.50 -11.17 13.92 -14.11 -0.20 -11.36 16 12 N -0.65 -10.99 5.30 -9.74 -0.05 -11.04 16 13 C 0.00 0.03 6.31 -83.57 -0.53 -0.49 16 14 C -0.09 -2.27 8.61 -39.79 -0.34 -2.61 16 15 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 16 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 17 C -0.46 -12.22 9.02 -37.85 -0.34 -12.56 16 18 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 19 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 20 N -0.81 -21.38 10.61 55.55 0.59 -20.79 16 21 Si 0.92 18.99 29.56 -169.99 -5.03 13.96 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.20 -4.87 9.74 -39.26 -0.38 -5.25 16 26 C -0.11 -2.36 9.90 -39.79 -0.39 -2.76 16 27 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 28 H 0.11 0.69 5.69 -52.49 -0.30 0.40 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 31 H 0.08 0.50 7.50 -51.93 -0.39 0.12 16 32 H 0.06 0.55 7.49 -51.93 -0.39 0.16 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 36 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 37 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 38 H 0.40 5.02 8.82 -40.82 -0.36 4.66 16 39 H 0.11 2.66 6.22 -52.49 -0.33 2.34 16 40 H 0.13 3.64 6.15 -52.48 -0.32 3.31 16 41 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 42 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -32.01 366.56 -7.86 -39.88 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.86 Total: 9.61 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.11 Total: -13.03 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.54 Total: -31.83 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.93 Total: -24.11 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.01 -7.86 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837863087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.997 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds