Wall clock time and date at job start Tue Mar 31 2020 11:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99870 * 2 1 4 4 C 1.52997 * 109.46983 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47034 * 240.00293 * 3 2 1 6 6 C 1.50692 * 109.47024 * 120.00104 * 3 2 1 7 7 O 1.20821 * 120.00466 * 0.02562 * 6 3 2 8 8 O 1.34232 * 119.99945 * 179.97438 * 6 3 2 9 9 C 1.45200 * 117.00456 * 180.02562 * 8 6 3 10 10 C 1.50693 * 109.47507 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08000 * 119.99597 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00244 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47116 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47687 * 299.99786 * 4 3 2 32 32 H 1.08995 * 109.47311 * 60.00652 * 4 3 2 33 33 H 1.09001 * 109.47264 * 300.00258 * 5 3 2 34 34 H 1.09005 * 109.47672 * 59.99882 * 5 3 2 35 35 H 1.08997 * 109.47719 * 179.97438 * 5 3 2 36 36 H 1.09005 * 109.46837 * 60.00183 * 9 8 6 37 37 H 1.09001 * 109.46863 * 300.01059 * 9 8 6 38 38 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 39 39 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 40 40 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 41 41 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 43 43 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9299 1.3849 1.2304 7 8 2.9354 0.4753 2.0255 8 8 3.6963 2.4663 1.4426 9 6 4.5056 2.4746 2.6481 10 6 5.2921 3.7582 2.7165 11 8 5.1811 4.5850 1.8360 12 7 6.1180 3.9880 3.7565 13 6 6.7761 5.2100 3.8660 14 6 7.2107 5.8697 2.7164 15 6 7.8613 7.0640 2.8162 16 6 8.0845 7.6366 4.0837 17 6 8.7526 8.8750 4.1949 18 1 9.4081 9.0618 5.0327 19 6 8.5657 9.8607 3.2198 20 7 7.8413 9.6041 2.1605 21 14 9.3499 11.5430 3.4298 22 1 10.8252 11.3947 3.5118 23 1 9.0019 12.4000 2.2680 24 1 8.8456 12.1721 4.6769 25 6 7.6427 6.9644 5.2403 26 6 6.9981 5.7683 5.1249 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.6142 3.4120 -0.0011 31 1 0.4429 2.4101 -0.8908 32 1 0.4423 2.4105 0.8891 33 1 3.6514 0.5577 -1.2494 34 1 2.3164 1.3285 -2.1393 35 1 3.4878 2.3303 -1.2496 36 1 5.1920 1.6280 2.6307 37 1 3.8575 2.3990 3.5212 38 1 6.2539 3.3019 4.4286 39 1 7.0353 5.4314 1.7451 40 1 8.2015 7.5713 1.9254 41 1 7.7120 10.2873 1.4841 42 1 7.8144 7.3951 6.2156 43 1 6.6591 5.2514 6.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837863087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:17 Heat of formation + Delta-G solvation = -95.491099 kcal Electronic energy + Delta-G solvation = -25399.559786 eV Core-core repulsion = 21602.666167 eV Total energy + Delta-G solvation = -3796.893619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05061 -41.13347 -39.15881 -38.15377 -37.24334 -36.20309 -34.75832 -32.09627 -31.54459 -31.19138 -29.61582 -28.40263 -26.68708 -25.33649 -23.43055 -23.01121 -22.45154 -21.33424 -19.79730 -19.24279 -18.88513 -18.46402 -17.85261 -17.72550 -17.40114 -16.98513 -16.21945 -16.09615 -15.76643 -15.36103 -15.18096 -14.86713 -14.52062 -14.20872 -14.10053 -13.94374 -13.63168 -13.42551 -13.34814 -13.28018 -13.10343 -12.83984 -12.76347 -12.69581 -12.32247 -12.24821 -11.94749 -11.80179 -11.73955 -11.71309 -11.48487 -11.23068 -10.82301 -10.53931 -10.43340 -9.46604 -8.78459 -8.50112 -6.33737 0.74949 0.96373 1.02119 1.12486 1.39204 1.42492 1.51759 1.52609 1.69108 2.23607 2.42186 2.80880 3.43946 3.54579 3.67153 3.69810 3.83148 3.93528 4.00945 4.02333 4.42142 4.43047 4.47397 4.66078 4.70430 4.77593 4.80421 4.96791 4.98071 5.09871 5.13791 5.15452 5.21312 5.26639 5.32847 5.39291 5.66211 5.70103 5.75376 5.84154 6.04985 6.13341 6.33676 6.50745 6.63122 6.70074 6.95253 7.00351 7.27042 8.42602 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.002342 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.771380 B =11954.378707 C =12688.190938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.155 4.155 3 C -0.023 4.023 4 C -0.146 4.146 5 C -0.138 4.138 6 C 0.472 3.528 7 O -0.525 6.525 8 O -0.344 6.344 9 C 0.057 3.943 10 C 0.499 3.501 11 O -0.556 6.556 12 N -0.635 5.635 13 C 0.017 3.983 14 C -0.107 4.107 15 C -0.169 4.169 16 C 0.066 3.934 17 C -0.495 4.495 18 H 0.081 0.919 19 C 0.022 3.978 20 N -0.846 5.846 21 Si 0.991 3.009 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.210 4.210 26 C -0.103 4.103 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.423 0.577 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.283 0.717 42 H 0.114 0.886 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.866 -16.904 -2.896 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.024 4.024 4 C -0.203 4.203 5 C -0.195 4.195 6 C 0.316 3.684 7 O -0.413 6.413 8 O -0.259 6.259 9 C -0.019 4.019 10 C 0.286 3.714 11 O -0.433 6.433 12 N -0.282 5.282 13 C -0.076 4.076 14 C -0.127 4.127 15 C -0.190 4.190 16 C 0.064 3.936 17 C -0.526 4.526 18 H 0.099 0.901 19 C -0.190 4.190 20 N -0.473 5.473 21 Si 0.812 3.188 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.184 1.184 25 C -0.230 4.230 26 C -0.123 4.123 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.132 0.868 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.033 -16.501 -3.477 20.717 hybrid contribution 0.596 0.516 0.339 0.858 sum -11.437 -15.985 -3.138 19.904 Atomic orbital electron populations 1.24283 0.95259 1.03819 0.97115 1.22508 0.96317 0.95573 1.02916 1.19717 0.94608 0.97550 0.90535 1.22011 0.98304 0.95749 1.04254 1.21860 0.99402 1.02906 0.95345 1.24333 0.77612 0.78560 0.87893 1.90632 1.64650 1.38922 1.47124 1.86579 1.53306 1.43166 1.42846 1.22728 0.95275 0.96015 0.87920 1.20669 0.79941 0.88418 0.82327 1.90756 1.65552 1.48049 1.38986 1.42622 1.43269 1.15624 1.26701 1.17287 1.06396 0.90199 0.93739 1.20664 0.98463 0.96511 0.97072 1.21172 1.04114 0.94947 0.98733 1.18090 0.91132 0.92647 0.91729 1.19752 1.25923 0.98679 1.08238 0.90121 1.26865 0.93939 1.04977 0.93218 1.69904 1.32502 1.36364 1.08569 0.85116 0.79280 0.75681 0.78748 1.18151 1.19826 1.18369 1.20971 1.06204 0.98020 0.97775 1.20452 1.00868 0.95751 0.95242 0.86360 0.86646 0.86802 0.91919 0.88169 0.91587 0.91796 0.88611 0.91885 0.85645 0.85768 0.73890 0.88479 0.87733 0.90698 0.86790 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 13.70 67.78 0.93 -1.11 16 2 C -0.16 -2.46 8.00 25.64 0.21 -2.26 16 3 C -0.02 -0.42 0.93 -53.68 -0.05 -0.47 16 4 C -0.15 -2.34 7.06 71.98 0.51 -1.84 16 5 C -0.14 -2.25 8.39 71.98 0.60 -1.65 16 6 C 0.47 11.58 6.55 71.23 0.47 12.04 16 7 O -0.52 -14.35 15.78 21.98 0.35 -14.00 16 8 O -0.34 -9.59 9.56 -45.09 -0.43 -10.02 16 9 C 0.06 1.40 5.95 71.23 0.42 1.82 16 10 C 0.50 16.88 7.74 87.65 0.68 17.56 16 11 O -0.56 -25.07 13.92 15.76 0.22 -24.86 16 12 N -0.63 -20.18 5.30 -303.11 -1.61 -21.78 16 13 C 0.02 0.72 6.31 38.57 0.24 0.96 16 14 C -0.11 -5.45 8.61 22.13 0.19 -5.26 16 15 C -0.17 -9.50 8.61 22.48 0.19 -9.31 16 16 C 0.07 3.64 5.55 -21.27 -0.12 3.52 16 17 C -0.50 -27.00 9.02 23.39 0.21 -26.79 16 18 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 19 C 0.02 1.13 5.42 85.24 0.46 1.59 16 20 N -0.85 -47.03 10.61 21.82 0.23 -46.80 16 21 Si 0.99 39.60 29.56 68.60 2.03 41.63 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 C -0.21 -9.87 9.74 22.48 0.22 -9.65 16 26 C -0.10 -4.19 9.90 22.13 0.22 -3.97 16 27 H 0.12 1.07 8.06 -2.91 -0.02 1.05 16 28 H 0.12 1.17 5.69 -2.91 -0.02 1.15 16 29 H 0.11 1.84 8.06 -2.91 -0.02 1.81 16 30 H 0.06 1.22 8.12 -2.38 -0.02 1.20 16 31 H 0.10 1.10 7.50 -2.39 -0.02 1.08 16 32 H 0.07 1.02 7.49 -2.39 -0.02 1.00 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 36 H 0.13 2.39 8.13 -2.38 -0.02 2.37 16 37 H 0.12 2.43 8.13 -2.39 -0.02 2.41 16 38 H 0.42 9.12 8.82 -92.71 -0.82 8.30 16 39 H 0.10 5.07 6.22 -2.91 -0.02 5.05 16 40 H 0.10 6.29 6.15 -2.91 -0.02 6.28 16 41 H 0.28 14.45 8.30 -92.70 -0.77 13.68 16 42 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 43 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -73.31 366.56 6.38 -66.93 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.21 Total: 33.72 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 5.38 Total: -24.80 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -1.38 Total: -68.58 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: 0.14 Total: -48.88 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -73.31 6.38 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837863087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.565 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds