Wall clock time and date at job start Tue Mar 31 2020 12:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47288 * 2 1 4 4 C 1.50696 * 109.47188 * 239.99475 * 2 1 3 5 5 H 1.08000 * 120.00592 * 239.99727 * 4 2 1 6 6 C 1.37886 * 119.99658 * 60.00306 * 4 2 1 7 7 N 1.31511 * 120.00232 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47226 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46896 * 119.99839 * 8 6 4 11 11 H 1.48495 * 109.47102 * 239.99593 * 8 6 4 12 12 C 1.52999 * 109.46997 * 119.99831 * 2 1 3 13 13 N 1.46502 * 109.47052 * 299.99691 * 12 2 1 14 14 C 1.34779 * 119.99736 * 180.02562 * 13 12 2 15 15 O 1.21281 * 120.00241 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99825 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.50495 * 54.92749 * 16 14 13 18 18 C 1.52903 * 109.52715 * 294.83465 * 16 14 13 19 19 C 1.50584 * 110.32298 * 190.15373 * 18 16 14 20 20 C 1.38096 * 119.91489 * 201.09384 * 19 18 16 21 21 C 1.38324 * 120.14093 * 180.69721 * 20 19 18 22 22 C 1.38393 * 120.46657 * 359.44684 * 21 20 19 23 23 C 1.38016 * 120.04545 * 0.46410 * 22 21 20 24 24 C 1.39397 * 119.66078 * 359.74025 * 23 22 21 25 25 C 1.48126 * 120.39988 * 180.22342 * 24 23 22 26 26 O 1.21473 * 121.44210 * 9.71415 * 25 24 23 27 27 O 1.35753 * 117.11250 * 189.69082 * 25 24 23 28 28 H 1.09000 * 109.46621 * 300.00367 * 1 2 3 29 29 H 1.08999 * 109.46976 * 60.00398 * 1 2 3 30 30 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47136 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46787 * 299.99717 * 3 2 1 33 33 H 1.08993 * 109.47166 * 59.99712 * 3 2 1 34 34 H 0.96993 * 120.00223 * 179.97438 * 7 6 4 35 35 H 1.09007 * 109.47371 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47137 * 60.00124 * 12 2 1 37 37 H 0.96994 * 120.00047 * 0.02562 * 13 12 2 38 38 H 1.09006 * 109.33066 * 69.89445 * 18 16 14 39 39 H 1.08999 * 109.33558 * 310.41670 * 18 16 14 40 40 H 1.08002 * 119.92539 * 0.41557 * 20 19 18 41 41 H 1.07998 * 119.76287 * 179.69379 * 21 20 19 42 42 H 1.08003 * 119.97134 * 180.17322 * 22 21 20 43 43 H 1.08005 * 120.17181 * 179.72182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3214 -1.1206 -4.0079 9 1 3.1464 -2.2872 -3.6036 10 1 1.1660 -1.5869 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5749 -1.4768 3.7809 16 6 1.3749 0.2195 4.9000 17 1 0.2887 0.2984 4.8563 18 6 1.9861 1.6194 4.9677 19 6 1.6980 2.2518 6.3036 20 6 1.7568 3.6245 6.4428 21 6 1.5072 4.2094 7.6712 22 6 1.1857 3.4287 8.7677 23 6 1.1214 2.0556 8.6434 24 6 1.3764 1.4621 7.4082 25 6 1.3071 -0.0096 7.2551 26 8 0.8632 -0.7181 8.1364 27 8 1.7607 -0.5322 6.0872 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7088 1.1611 -3.4844 35 1 3.1300 -0.7209 1.2496 36 1 1.6766 -1.7489 1.2493 37 1 0.9938 0.7579 2.3564 38 1 1.5608 2.2374 4.1768 39 1 3.0647 1.5496 4.8267 40 1 2.0027 4.2423 5.5917 41 1 1.5597 5.2831 7.7743 42 1 0.9895 3.8940 9.7224 43 1 0.8750 1.4441 9.4989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837885075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:32 Heat of formation + Delta-G solvation = -94.696625 kcal Electronic energy + Delta-G solvation = -26301.726174 eV Core-core repulsion = 22504.867006 eV Total energy + Delta-G solvation = -3796.859168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31639 -39.46502 -38.71187 -37.36386 -36.34381 -33.87956 -33.16737 -31.60389 -31.15435 -29.91947 -26.09455 -25.82121 -25.40293 -24.63967 -24.40729 -22.20704 -20.92699 -19.99949 -18.98338 -18.39631 -17.71266 -16.87767 -16.39156 -16.03025 -15.69447 -15.40272 -15.02117 -14.83580 -14.73327 -14.54484 -14.35959 -13.77668 -13.66369 -13.28727 -13.00623 -12.76927 -12.61030 -12.37595 -12.28699 -12.08528 -11.60677 -11.48193 -11.28030 -11.01701 -10.93422 -10.71829 -10.48818 -10.46570 -10.26003 -9.73380 -9.66746 -9.48468 -9.35382 -9.22840 -8.86506 -8.61466 -8.42546 -6.09001 -4.19003 0.24434 0.85968 1.90591 2.63234 2.69665 3.23470 3.28790 3.32540 3.36867 3.48962 3.85649 4.11136 4.18393 4.35489 4.44272 4.55122 4.62047 4.81605 4.88783 4.99465 5.08545 5.18400 5.24834 5.43618 5.55000 5.79907 5.86554 5.96508 6.09194 6.21806 6.37979 6.39716 6.62831 6.66415 6.71301 6.82638 6.85390 6.92216 7.16821 7.25751 7.46593 7.62561 7.81002 7.92681 8.05498 8.29468 8.44039 8.81841 9.47446 10.92502 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.002817 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.841774 B = 9936.840748 C =10703.690248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.512 3.488 15 O -0.519 6.519 16 C 0.084 3.916 17 H 0.106 0.894 18 C -0.114 4.114 19 C -0.033 4.033 20 C -0.125 4.125 21 C -0.080 4.080 22 C -0.135 4.135 23 C -0.049 4.049 24 C -0.175 4.175 25 C 0.528 3.472 26 O -0.446 6.446 27 O -0.329 6.329 28 H 0.006 0.994 29 H 0.086 0.914 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.086 0.914 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.399 0.601 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 10.632 17.696 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.010 3.990 13 N -0.361 5.361 14 C 0.294 3.706 15 O -0.394 6.394 16 C 0.025 3.975 17 H 0.124 0.876 18 C -0.151 4.151 19 C -0.034 4.034 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.153 4.153 23 C -0.067 4.067 24 C -0.177 4.177 25 C 0.370 3.630 26 O -0.328 6.328 27 O -0.247 6.247 28 H 0.025 0.975 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.234 0.766 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.093 9.478 18.006 20.377 hybrid contribution 0.009 0.147 -0.869 0.881 sum -1.084 9.625 17.137 19.685 Atomic orbital electron populations 1.21852 0.97692 0.99339 1.00121 1.18372 0.92847 0.92797 0.90436 1.21839 0.98678 0.98271 1.00101 1.21010 1.31533 1.12170 0.89785 0.92297 1.24873 0.94794 0.94904 0.98891 1.69797 1.36634 1.22779 1.23218 0.86511 0.78669 0.79782 0.82919 1.19723 1.21034 1.21047 1.21837 0.98424 0.95974 0.82716 1.46209 1.52682 1.31947 1.05285 1.19651 0.81888 0.85179 0.83879 1.90754 1.36954 1.25461 1.86268 1.22705 1.00673 0.90283 0.83824 0.87612 1.21146 1.04429 0.94024 0.95518 1.19929 0.95516 0.94014 0.93927 1.21072 1.01231 0.93446 0.98514 1.21438 0.95501 1.00491 0.92424 1.21221 1.01270 0.93311 0.99455 1.21272 0.94187 0.95120 0.96169 1.20120 1.08593 0.93355 0.95633 1.20995 0.72944 0.87257 0.81842 1.90807 1.36271 1.64738 1.41018 1.87097 1.70505 1.52659 1.14442 0.97545 0.89484 0.95303 0.95314 0.89514 0.97557 0.93006 0.92277 0.92298 0.76552 0.86945 0.87439 0.84572 0.85062 0.84935 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.21 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.71 8.08 37.16 0.30 -2.41 16 4 C -0.51 -12.70 8.01 -34.44 -0.28 -12.98 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.68 9.35 55.43 0.52 -22.16 16 8 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.61 4.50 -4.04 -0.02 2.59 16 13 N -0.71 -11.19 4.92 -60.29 -0.30 -11.49 16 14 C 0.51 8.33 7.16 -10.98 -0.08 8.25 16 15 O -0.52 -10.87 16.51 -13.98 -0.23 -11.10 16 16 C 0.08 1.06 3.15 -27.93 -0.09 0.97 16 17 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.11 -1.08 5.30 -27.99 -0.15 -1.23 16 19 C -0.03 -0.31 5.80 -104.24 -0.60 -0.92 16 20 C -0.12 -0.90 9.71 -39.60 -0.38 -1.29 16 21 C -0.08 -0.51 10.03 -39.49 -0.40 -0.91 16 22 C -0.13 -0.92 10.04 -39.61 -0.40 -1.32 16 23 C -0.05 -0.45 9.64 -39.23 -0.38 -0.83 16 24 C -0.18 -1.94 5.83 -104.92 -0.61 -2.55 16 25 C 0.53 7.56 7.83 34.79 0.27 7.83 16 26 O -0.45 -7.37 17.40 -19.09 -0.33 -7.70 16 27 O -0.33 -5.18 9.87 -50.18 -0.50 -5.68 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 29 H 0.09 2.06 6.07 -51.93 -0.32 1.74 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 2.02 6.07 -51.93 -0.32 1.71 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 35 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.40 5.34 6.16 -40.82 -0.25 5.09 16 38 H 0.11 0.78 8.13 -51.93 -0.42 0.36 16 39 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 43 H 0.14 1.18 7.77 -52.48 -0.41 0.77 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -30.93 354.69 -8.96 -39.89 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.77 Total: 2.29 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.68 Total: -4.54 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.22 Total: -33.65 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.06 Total: -24.48 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.93 -8.96 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837885075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.803 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds