Wall clock time and date at job start Tue Mar 31 2020 12:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47288 * 2 1 4 4 C 1.50696 * 109.47188 * 239.99475 * 2 1 3 5 5 H 1.08000 * 120.00592 * 239.99727 * 4 2 1 6 6 C 1.37886 * 119.99658 * 60.00306 * 4 2 1 7 7 N 1.31511 * 120.00232 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47226 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46896 * 119.99839 * 8 6 4 11 11 H 1.48495 * 109.47102 * 239.99593 * 8 6 4 12 12 C 1.52999 * 109.46997 * 119.99831 * 2 1 3 13 13 N 1.46502 * 109.47052 * 299.99691 * 12 2 1 14 14 C 1.34779 * 119.99736 * 180.02562 * 13 12 2 15 15 O 1.21281 * 120.00241 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99825 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.50495 * 54.92749 * 16 14 13 18 18 C 1.52903 * 109.52715 * 294.83465 * 16 14 13 19 19 C 1.50584 * 110.32298 * 190.15373 * 18 16 14 20 20 C 1.38096 * 119.91489 * 201.09384 * 19 18 16 21 21 C 1.38324 * 120.14093 * 180.69721 * 20 19 18 22 22 C 1.38393 * 120.46657 * 359.44684 * 21 20 19 23 23 C 1.38016 * 120.04545 * 0.46410 * 22 21 20 24 24 C 1.39397 * 119.66078 * 359.74025 * 23 22 21 25 25 C 1.48126 * 120.39988 * 180.22342 * 24 23 22 26 26 O 1.21473 * 121.44210 * 9.71415 * 25 24 23 27 27 O 1.35753 * 117.11250 * 189.69082 * 25 24 23 28 28 H 1.09000 * 109.46621 * 300.00367 * 1 2 3 29 29 H 1.08999 * 109.46976 * 60.00398 * 1 2 3 30 30 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47136 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46787 * 299.99717 * 3 2 1 33 33 H 1.08993 * 109.47166 * 59.99712 * 3 2 1 34 34 H 0.96993 * 120.00223 * 179.97438 * 7 6 4 35 35 H 1.09007 * 109.47371 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47137 * 60.00124 * 12 2 1 37 37 H 0.96994 * 120.00047 * 0.02562 * 13 12 2 38 38 H 1.09006 * 109.33066 * 69.89445 * 18 16 14 39 39 H 1.08999 * 109.33558 * 310.41670 * 18 16 14 40 40 H 1.08002 * 119.92539 * 0.41557 * 20 19 18 41 41 H 1.07998 * 119.76287 * 179.69379 * 21 20 19 42 42 H 1.08003 * 119.97134 * 180.17322 * 22 21 20 43 43 H 1.08005 * 120.17181 * 179.72182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3214 -1.1206 -4.0079 9 1 3.1464 -2.2872 -3.6036 10 1 1.1660 -1.5869 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5749 -1.4768 3.7809 16 6 1.3749 0.2195 4.9000 17 1 0.2887 0.2984 4.8563 18 6 1.9861 1.6194 4.9677 19 6 1.6980 2.2518 6.3036 20 6 1.7568 3.6245 6.4428 21 6 1.5072 4.2094 7.6712 22 6 1.1857 3.4287 8.7677 23 6 1.1214 2.0556 8.6434 24 6 1.3764 1.4621 7.4082 25 6 1.3071 -0.0096 7.2551 26 8 0.8632 -0.7181 8.1364 27 8 1.7607 -0.5322 6.0872 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7088 1.1611 -3.4844 35 1 3.1300 -0.7209 1.2496 36 1 1.6766 -1.7489 1.2493 37 1 0.9938 0.7579 2.3564 38 1 1.5608 2.2374 4.1768 39 1 3.0647 1.5496 4.8267 40 1 2.0027 4.2423 5.5917 41 1 1.5597 5.2831 7.7743 42 1 0.9895 3.8940 9.7224 43 1 0.8750 1.4441 9.4989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837885075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:32 Heat of formation + Delta-G solvation = -111.931354 kcal Electronic energy + Delta-G solvation = -26302.473528 eV Core-core repulsion = 22504.867006 eV Total energy + Delta-G solvation = -3797.606522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27706 -40.76301 -39.51184 -38.59370 -37.91329 -35.23410 -34.26965 -32.78278 -32.24035 -30.91813 -27.52733 -27.49471 -27.01912 -25.67735 -25.42119 -22.89341 -22.15346 -20.97917 -20.61745 -19.33142 -18.96652 -17.91746 -17.73039 -17.19373 -17.00152 -16.58668 -16.25785 -16.21424 -15.89658 -15.41558 -15.20244 -14.86040 -14.81312 -14.76866 -14.19448 -14.09149 -13.97067 -13.53938 -13.17274 -13.08706 -13.02324 -12.81131 -12.67929 -12.56867 -12.22477 -12.19544 -12.12589 -12.07480 -11.51210 -11.45229 -11.24936 -10.83242 -10.65378 -10.38410 -10.10230 -10.05305 -9.81875 -8.01393 -6.15984 -0.50973 0.29419 0.98698 1.41325 1.41738 1.46983 1.54187 1.58216 2.33518 2.49104 2.65474 2.98848 3.22890 3.28757 3.32710 3.70088 3.78586 3.83106 4.16657 4.31465 4.38975 4.42871 4.48535 4.52894 4.59200 4.75035 4.81537 4.97973 5.00991 5.10161 5.12849 5.20011 5.24135 5.30507 5.32662 5.43706 5.56007 5.68643 5.70681 5.72299 5.86298 6.14179 6.20813 6.25102 6.46275 6.51448 6.88183 7.13904 7.51788 8.97324 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.002817 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.841774 B = 9936.840748 C =10703.690248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.940 3.060 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.147 3.853 13 N -0.694 5.694 14 C 0.515 3.485 15 O -0.572 6.572 16 C 0.088 3.912 17 H 0.134 0.866 18 C -0.108 4.108 19 C -0.038 4.038 20 C -0.121 4.121 21 C -0.069 4.069 22 C -0.130 4.130 23 C -0.061 4.061 24 C -0.199 4.199 25 C 0.527 3.473 26 O -0.487 6.487 27 O -0.365 6.365 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.260 0.740 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.415 0.585 38 H 0.147 0.853 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 14.082 18.550 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.767 3.233 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.024 3.976 13 N -0.347 5.347 14 C 0.300 3.700 15 O -0.451 6.451 16 C 0.030 3.970 17 H 0.151 0.849 18 C -0.145 4.145 19 C -0.039 4.039 20 C -0.139 4.139 21 C -0.087 4.087 22 C -0.148 4.148 23 C -0.079 4.079 24 C -0.200 4.200 25 C 0.372 3.628 26 O -0.372 6.372 27 O -0.284 6.284 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.254 0.746 38 H 0.165 0.835 39 H 0.121 0.879 40 H 0.182 0.818 41 H 0.184 0.816 42 H 0.178 0.822 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.622 12.973 18.851 22.940 hybrid contribution 0.182 -0.892 -1.099 1.427 sum -1.439 12.080 17.752 21.521 Atomic orbital electron populations 1.21712 0.97061 0.98708 1.00727 1.18361 0.93266 0.93373 0.89829 1.21680 0.98115 0.97347 1.00838 1.21306 1.31595 1.12113 0.91664 0.93951 1.25373 0.95186 0.95583 1.00723 1.69888 1.36920 1.23189 1.23498 0.85787 0.78096 0.78781 0.80599 1.20274 1.20923 1.20696 1.21380 0.97465 0.95141 0.83615 1.45902 1.52537 1.32059 1.04196 1.20250 0.80607 0.84375 0.84803 1.90734 1.39359 1.27930 1.87057 1.22815 1.02219 0.90975 0.80993 0.84883 1.21191 1.04150 0.92100 0.97034 1.19938 0.96018 0.94923 0.92994 1.21412 1.00104 0.92409 0.99982 1.21906 0.93047 1.02203 0.91536 1.21567 1.00016 0.92114 1.01112 1.21403 0.94624 0.96472 0.95422 1.19976 1.11638 0.91040 0.97377 1.21528 0.71722 0.88744 0.80811 1.90765 1.38509 1.66024 1.41885 1.87014 1.70939 1.54662 1.15790 0.93854 0.91838 0.96540 0.96096 0.91990 0.93488 0.93045 0.93682 0.94311 0.74637 0.83501 0.87940 0.81806 0.81612 0.82218 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 8.08 71.98 0.58 -4.51 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.21 16 3 C -0.12 -4.82 8.08 71.98 0.58 -4.24 16 4 C -0.53 -26.79 8.01 25.60 0.21 -26.59 16 5 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 6 C 0.03 1.59 5.15 84.66 0.44 2.03 16 7 N -0.90 -45.68 9.35 21.45 0.20 -45.48 16 8 Si 0.94 41.55 29.54 68.60 2.03 43.58 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.15 5.79 4.50 86.38 0.39 6.18 16 13 N -0.69 -20.76 4.92 -463.04 -2.28 -23.04 16 14 C 0.51 16.46 7.16 87.66 0.63 17.09 16 15 O -0.57 -24.60 16.51 15.64 0.26 -24.34 16 16 C 0.09 2.11 3.15 29.82 0.09 2.20 16 17 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 18 C -0.11 -1.73 5.30 29.78 0.16 -1.58 16 19 C -0.04 -0.61 5.80 -19.62 -0.11 -0.72 16 20 C -0.12 -1.19 9.71 22.26 0.22 -0.97 16 21 C -0.07 -0.53 10.03 22.33 0.22 -0.30 16 22 C -0.13 -1.31 10.04 22.25 0.22 -1.09 16 23 C -0.06 -1.03 9.64 22.50 0.22 -0.81 16 24 C -0.20 -4.19 5.83 -20.06 -0.12 -4.30 16 25 C 0.53 15.50 7.83 70.45 0.55 16.06 16 26 O -0.49 -16.96 17.40 19.77 0.34 -16.61 16 27 O -0.37 -11.77 9.87 -60.95 -0.60 -12.37 16 28 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 29 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 2.80 6.07 -2.39 -0.01 2.79 16 33 H 0.05 1.43 6.86 -2.39 -0.02 1.41 16 34 H 0.26 12.79 8.31 -92.71 -0.77 12.02 16 35 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.42 9.63 6.16 -92.71 -0.57 9.06 16 38 H 0.15 1.30 8.13 -2.38 -0.02 1.28 16 39 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.13 2.27 7.77 -2.91 -0.02 2.25 16 Total: -1.00 -71.16 354.69 4.66 -66.50 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.47 Total: 11.11 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 4.25 Total: 0.65 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -2.08 Total: -68.52 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: 0.00 Total: -53.32 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -71.16 4.66 -66.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837885075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.432 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds