Wall clock time and date at job start Tue Mar 31 2020 12:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 C 1.50695 * 109.46957 * 239.99750 * 2 1 3 5 5 H 1.07999 * 119.99945 * 241.34414 * 4 2 1 6 6 C 1.37876 * 120.00274 * 61.34760 * 4 2 1 7 7 N 1.31517 * 119.99849 * 193.97265 * 6 4 2 8 8 Si 1.86802 * 119.99781 * 13.97741 * 6 4 2 9 9 H 1.48496 * 109.47110 * 84.54974 * 8 6 4 10 10 H 1.48506 * 109.46638 * 204.54822 * 8 6 4 11 11 H 1.48492 * 109.47219 * 324.54438 * 8 6 4 12 12 C 1.52997 * 109.46739 * 119.99691 * 2 1 3 13 13 N 1.46497 * 109.47258 * 299.99767 * 12 2 1 14 14 C 1.34778 * 120.00039 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00137 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99934 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47195 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.04899 * 53.51580 * 17 16 14 19 19 O 1.45392 * 110.10846 * 292.00991 * 17 16 14 20 20 C 1.34343 * 109.00973 * 240.73486 * 19 17 16 21 21 O 1.21470 * 124.89807 * 179.97438 * 20 19 17 22 22 C 1.47420 * 110.20651 * 0.02562 * 20 19 17 23 23 C 1.39622 * 132.54467 * 179.97438 * 22 20 19 24 24 C 1.37947 * 119.79797 * 180.02562 * 23 22 20 25 25 C 1.38397 * 120.32110 * 359.95803 * 24 23 22 26 26 C 1.38496 * 120.21360 * 0.06318 * 25 24 23 27 27 C 1.37541 * 119.94778 * 359.95761 * 26 25 24 28 28 H 1.09002 * 109.47600 * 309.37387 * 1 2 3 29 29 H 1.09009 * 109.47077 * 69.37395 * 1 2 3 30 30 H 1.09001 * 109.47366 * 189.37044 * 1 2 3 31 31 H 1.09001 * 109.46730 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46545 * 299.99571 * 3 2 1 33 33 H 1.08996 * 109.47215 * 59.99559 * 3 2 1 34 34 H 0.97001 * 119.99415 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46802 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47287 * 60.00329 * 12 2 1 37 37 H 0.97006 * 120.00315 * 0.02562 * 13 12 2 38 38 H 1.08996 * 109.47239 * 60.00046 * 16 14 13 39 39 H 1.09005 * 109.46733 * 300.00237 * 16 14 13 40 40 H 1.08004 * 120.10192 * 0.05162 * 23 22 20 41 41 H 1.07991 * 119.84004 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.89644 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.02464 * 180.23135 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7223 -0.2235 -2.4825 7 7 1.9158 -0.9728 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1417 2.4815 -2.7085 10 1 0.2470 1.5863 -3.9289 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8767 -0.4912 3.6695 15 8 2.5739 -1.4773 3.7809 16 6 1.3739 0.2190 4.9000 17 6 1.8839 -0.5022 6.1493 18 1 2.9678 -0.6085 6.1031 19 8 1.2586 -1.8099 6.2619 20 6 0.5650 -1.8659 7.4110 21 8 -0.0701 -2.8282 7.7932 22 6 0.6848 -0.5906 8.1407 23 6 0.1645 -0.1469 9.3580 24 6 0.4501 1.1276 9.8018 25 6 1.2501 1.9675 9.0469 26 6 1.7695 1.5346 7.8382 27 6 1.4908 0.2660 7.3860 28 1 -0.3634 0.6519 0.7944 29 1 -0.3634 0.3620 -0.9619 30 1 -0.3634 -1.0139 0.1673 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6974 -0.6303 -4.4267 35 1 3.1299 -0.7208 1.2495 36 1 1.6766 -1.7488 1.2493 37 1 0.9937 0.7580 2.3564 38 1 0.2839 0.2190 4.8996 39 1 1.7373 1.2467 4.9002 40 1 -0.4594 -0.7997 9.9506 41 1 0.0483 1.4714 10.7435 42 1 1.4696 2.9638 9.4011 43 1 2.3966 2.1913 7.2533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837886257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:00 Heat of formation + Delta-G solvation = -68.680861 kcal Electronic energy + Delta-G solvation = -26046.250171 eV Core-core repulsion = 22250.519130 eV Total energy + Delta-G solvation = -3795.731040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00944 -39.46863 -38.69370 -37.60435 -36.71983 -33.40871 -33.06311 -31.71583 -31.55104 -30.58047 -26.58358 -26.38152 -25.20822 -24.70478 -24.29011 -22.37708 -21.11733 -20.12892 -19.21264 -17.94247 -17.65088 -16.95933 -16.66082 -16.29650 -16.06770 -15.54100 -15.22420 -15.12587 -14.89710 -14.63203 -14.10325 -13.84377 -13.53489 -13.38691 -13.20804 -13.10047 -12.94705 -12.61785 -12.34854 -12.26070 -12.15657 -12.06995 -11.68161 -11.29864 -11.10492 -10.51799 -10.47381 -10.35342 -10.20746 -10.10379 -9.72257 -9.62644 -9.40803 -9.14627 -8.72305 -8.60003 -8.47759 -6.17011 -4.14550 0.12581 0.67797 2.16370 2.75484 2.90249 3.16750 3.20989 3.27361 3.27781 3.36160 3.43438 3.80432 4.19792 4.32725 4.36689 4.42384 4.67992 4.71181 4.82670 4.99071 5.03007 5.13208 5.15470 5.32722 5.38434 5.63464 5.68172 5.73357 5.78751 6.00287 6.02373 6.17771 6.30606 6.42589 6.48214 6.49052 6.59912 6.64774 6.72805 6.91882 7.18359 7.21611 7.39333 7.69139 7.83283 8.41048 8.50895 8.88649 9.46535 10.96122 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.002696 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.197340 B =10383.223605 C =10950.291908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.142 3.858 13 N -0.721 5.721 14 C 0.506 3.494 15 O -0.534 6.534 16 C -0.147 4.147 17 C 0.138 3.862 18 H 0.134 0.866 19 O -0.292 6.292 20 C 0.516 3.484 21 O -0.453 6.453 22 C -0.191 4.191 23 C -0.037 4.037 24 C -0.127 4.127 25 C -0.080 4.080 26 C -0.096 4.096 27 C -0.094 4.094 28 H 0.021 0.979 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.396 0.604 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 11.313 25.853 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.020 3.980 13 N -0.372 5.372 14 C 0.290 3.710 15 O -0.411 6.411 16 C -0.187 4.187 17 C 0.082 3.918 18 H 0.151 0.849 19 O -0.207 6.207 20 C 0.357 3.643 21 O -0.339 6.339 22 C -0.192 4.192 23 C -0.055 4.055 24 C -0.144 4.144 25 C -0.098 4.098 26 C -0.114 4.114 27 C -0.094 4.094 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.231 0.769 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.329 9.923 25.690 27.638 hybrid contribution -0.614 1.492 -0.329 1.646 sum -2.943 11.415 25.361 27.967 Atomic orbital electron populations 1.22307 0.97855 0.99898 0.99946 1.18719 0.92499 0.92236 0.93811 1.22364 1.01196 0.98327 0.98551 1.20718 1.34126 1.12364 0.87983 0.90520 1.24982 0.94669 0.97313 0.95794 1.69955 1.48082 1.35907 0.98747 0.87288 0.79306 0.85545 0.76018 1.21363 1.23392 1.17534 1.21533 0.98623 0.95923 0.81970 1.46285 1.52960 1.31891 1.06106 1.20173 0.81231 0.84998 0.84583 1.90747 1.37965 1.25782 1.86638 1.21994 1.04034 1.00819 0.91877 1.21735 0.99711 0.78942 0.91391 0.84855 1.87492 1.60415 1.34394 1.38387 1.20616 0.76884 0.86773 0.80010 1.90879 1.37540 1.37393 1.68065 1.20983 1.03563 0.96383 0.98305 1.20924 0.96000 0.95617 0.92959 1.21238 0.99051 0.93481 1.00674 1.21458 0.94981 0.99935 0.93451 1.20363 1.00587 0.93759 0.96687 1.20852 0.97266 0.95255 0.96077 0.95985 0.92508 0.93351 0.92767 0.94028 0.95214 0.92529 0.91873 0.91766 0.76907 0.87769 0.86490 0.84564 0.84561 0.84474 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.85 7.52 37.16 0.28 -2.57 16 4 C -0.51 -13.64 8.62 -34.44 -0.30 -13.94 16 5 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 6 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 8 Si 0.89 20.73 22.79 -169.99 -3.87 16.86 16 9 H -0.29 -6.64 7.10 56.52 0.40 -6.24 16 10 H -0.31 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.25 -5.26 4.65 56.52 0.26 -5.00 16 12 C 0.14 2.75 4.49 -4.04 -0.02 2.73 16 13 N -0.72 -10.91 5.00 -60.30 -0.30 -11.21 16 14 C 0.51 7.45 7.74 -10.98 -0.09 7.37 16 15 O -0.53 -10.17 15.55 -3.80 -0.06 -10.23 16 16 C -0.15 -1.41 5.44 -27.88 -0.15 -1.56 16 17 C 0.14 1.45 3.14 -27.83 -0.09 1.36 16 18 H 0.13 1.34 7.92 -51.93 -0.41 0.93 16 19 O -0.29 -4.27 10.29 -43.46 -0.45 -4.72 16 20 C 0.52 7.19 8.58 34.47 0.30 7.48 16 21 O -0.45 -7.63 18.04 -18.92 -0.34 -7.97 16 22 C -0.19 -1.94 6.27 -105.08 -0.66 -2.60 16 23 C -0.04 -0.28 10.10 -39.17 -0.40 -0.68 16 24 C -0.13 -0.66 10.02 -39.63 -0.40 -1.06 16 25 C -0.08 -0.37 10.05 -39.43 -0.40 -0.77 16 26 C -0.10 -0.55 10.03 -39.74 -0.40 -0.94 16 27 C -0.09 -0.79 5.67 -104.27 -0.59 -1.38 16 28 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 29 H 0.06 1.21 4.30 -51.92 -0.22 0.99 16 30 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.86 2.25 -51.92 -0.12 0.74 16 33 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.40 5.01 6.26 -40.82 -0.26 4.76 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 42 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 43 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -34.65 347.61 -7.46 -42.11 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.65 Total: 2.26 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.80 Total: -6.63 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.47 Total: -36.92 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.85 Total: -22.92 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -3.87 Total: 16.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.65 -7.46 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837886257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.568 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds