Wall clock time and date at job start Tue Mar 31 2020 12:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 C 1.50695 * 109.46957 * 239.99750 * 2 1 3 5 5 H 1.07999 * 119.99945 * 241.34414 * 4 2 1 6 6 C 1.37876 * 120.00274 * 61.34760 * 4 2 1 7 7 N 1.31517 * 119.99849 * 193.97265 * 6 4 2 8 8 Si 1.86802 * 119.99781 * 13.97741 * 6 4 2 9 9 H 1.48496 * 109.47110 * 84.54974 * 8 6 4 10 10 H 1.48506 * 109.46638 * 204.54822 * 8 6 4 11 11 H 1.48492 * 109.47219 * 324.54438 * 8 6 4 12 12 C 1.52997 * 109.46739 * 119.99691 * 2 1 3 13 13 N 1.46497 * 109.47258 * 299.99767 * 12 2 1 14 14 C 1.34778 * 120.00039 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00137 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99934 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47195 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.04899 * 53.51580 * 17 16 14 19 19 O 1.45392 * 110.10846 * 292.00991 * 17 16 14 20 20 C 1.34343 * 109.00973 * 240.73486 * 19 17 16 21 21 O 1.21470 * 124.89807 * 179.97438 * 20 19 17 22 22 C 1.47420 * 110.20651 * 0.02562 * 20 19 17 23 23 C 1.39622 * 132.54467 * 179.97438 * 22 20 19 24 24 C 1.37947 * 119.79797 * 180.02562 * 23 22 20 25 25 C 1.38397 * 120.32110 * 359.95803 * 24 23 22 26 26 C 1.38496 * 120.21360 * 0.06318 * 25 24 23 27 27 C 1.37541 * 119.94778 * 359.95761 * 26 25 24 28 28 H 1.09002 * 109.47600 * 309.37387 * 1 2 3 29 29 H 1.09009 * 109.47077 * 69.37395 * 1 2 3 30 30 H 1.09001 * 109.47366 * 189.37044 * 1 2 3 31 31 H 1.09001 * 109.46730 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46545 * 299.99571 * 3 2 1 33 33 H 1.08996 * 109.47215 * 59.99559 * 3 2 1 34 34 H 0.97001 * 119.99415 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46802 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47287 * 60.00329 * 12 2 1 37 37 H 0.97006 * 120.00315 * 0.02562 * 13 12 2 38 38 H 1.08996 * 109.47239 * 60.00046 * 16 14 13 39 39 H 1.09005 * 109.46733 * 300.00237 * 16 14 13 40 40 H 1.08004 * 120.10192 * 0.05162 * 23 22 20 41 41 H 1.07991 * 119.84004 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.89644 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.02464 * 180.23135 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7223 -0.2235 -2.4825 7 7 1.9158 -0.9728 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1417 2.4815 -2.7085 10 1 0.2470 1.5863 -3.9289 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8767 -0.4912 3.6695 15 8 2.5739 -1.4773 3.7809 16 6 1.3739 0.2190 4.9000 17 6 1.8839 -0.5022 6.1493 18 1 2.9678 -0.6085 6.1031 19 8 1.2586 -1.8099 6.2619 20 6 0.5650 -1.8659 7.4110 21 8 -0.0701 -2.8282 7.7932 22 6 0.6848 -0.5906 8.1407 23 6 0.1645 -0.1469 9.3580 24 6 0.4501 1.1276 9.8018 25 6 1.2501 1.9675 9.0469 26 6 1.7695 1.5346 7.8382 27 6 1.4908 0.2660 7.3860 28 1 -0.3634 0.6519 0.7944 29 1 -0.3634 0.3620 -0.9619 30 1 -0.3634 -1.0139 0.1673 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6974 -0.6303 -4.4267 35 1 3.1299 -0.7208 1.2495 36 1 1.6766 -1.7488 1.2493 37 1 0.9937 0.7580 2.3564 38 1 0.2839 0.2190 4.8996 39 1 1.7373 1.2467 4.9002 40 1 -0.4594 -0.7997 9.9506 41 1 0.0483 1.4714 10.7435 42 1 1.4696 2.9638 9.4011 43 1 2.3966 2.1913 7.2533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837886257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:59 Heat of formation + Delta-G solvation = -93.032950 kcal Electronic energy + Delta-G solvation = -26047.306156 eV Core-core repulsion = 22250.519130 eV Total energy + Delta-G solvation = -3796.787026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.83075 -40.74307 -39.39109 -38.70624 -38.22942 -34.99002 -33.94728 -33.35841 -32.24547 -31.30038 -28.02959 -27.82325 -27.03331 -25.66793 -25.14603 -23.04263 -22.02960 -21.21676 -20.90253 -18.70801 -18.65967 -18.12337 -17.93109 -17.61760 -17.01192 -16.79120 -16.53318 -16.46403 -15.82230 -15.28929 -15.08229 -15.02862 -14.83754 -14.59218 -14.39646 -14.33098 -13.95587 -13.87690 -13.80501 -13.72953 -13.15916 -12.81859 -12.75541 -12.39016 -12.24983 -12.14121 -12.00590 -11.94117 -11.75292 -11.43485 -11.10422 -10.89048 -10.61274 -10.37814 -10.13240 -9.98831 -9.94630 -8.29901 -6.32241 -0.50310 0.22797 1.34899 1.37149 1.39018 1.52545 1.68702 1.95734 2.22797 2.35787 2.66032 2.67967 3.00212 3.06393 3.45842 3.77644 3.90059 4.06665 4.12555 4.15717 4.30117 4.32699 4.37358 4.43264 4.51031 4.59455 4.66037 4.78278 4.85721 4.87180 4.93480 4.95251 5.08324 5.11528 5.19574 5.29586 5.39020 5.44581 5.56220 5.60019 5.73345 5.81194 5.81967 6.23158 6.30565 6.65058 6.73390 7.32614 7.34681 8.87650 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.002696 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.197340 B =10383.223605 C =10950.291908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.146 4.146 4 C -0.521 4.521 5 H 0.023 0.977 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.318 1.318 11 H -0.200 1.200 12 C 0.157 3.843 13 N -0.710 5.710 14 C 0.502 3.498 15 O -0.585 6.585 16 C -0.132 4.132 17 C 0.131 3.869 18 H 0.132 0.868 19 O -0.330 6.330 20 C 0.508 3.492 21 O -0.506 6.506 22 C -0.220 4.220 23 C -0.047 4.047 24 C -0.121 4.121 25 C -0.064 4.064 26 C -0.089 4.089 27 C -0.090 4.090 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.264 0.736 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.414 0.586 38 H 0.120 0.880 39 H 0.170 0.830 40 H 0.135 0.865 41 H 0.167 0.833 42 H 0.177 0.823 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 17.231 29.080 33.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.559 4.559 5 H 0.041 0.959 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.778 3.222 9 H -0.206 1.206 10 H -0.248 1.248 11 H -0.124 1.124 12 C 0.033 3.967 13 N -0.362 5.362 14 C 0.290 3.710 15 O -0.465 6.465 16 C -0.171 4.171 17 C 0.075 3.925 18 H 0.149 0.851 19 O -0.245 6.245 20 C 0.353 3.647 21 O -0.396 6.396 22 C -0.221 4.221 23 C -0.065 4.065 24 C -0.138 4.138 25 C -0.082 4.082 26 C -0.107 4.107 27 C -0.090 4.090 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.253 0.747 38 H 0.138 0.862 39 H 0.187 0.813 40 H 0.153 0.847 41 H 0.184 0.816 42 H 0.194 0.806 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.393 15.893 28.962 33.209 hybrid contribution -0.175 -0.441 -1.252 1.339 sum -3.568 15.452 27.710 31.927 Atomic orbital electron populations 1.22240 0.96211 1.00441 1.01060 1.18648 0.93647 0.93443 0.91601 1.22282 1.01072 0.96346 1.00572 1.21073 1.32943 1.11041 0.90840 0.95885 1.25948 0.95390 1.01985 0.95125 1.70135 1.50785 1.38478 0.99467 0.86273 0.79459 0.79501 0.76983 1.20568 1.24777 1.12356 1.20989 0.97408 0.94708 0.83601 1.46008 1.53159 1.32156 1.04911 1.21128 0.79942 0.84340 0.85634 1.90740 1.40235 1.28199 1.87363 1.22049 1.04814 1.02261 0.87957 1.21939 0.99471 0.77932 0.93131 0.85100 1.87432 1.60704 1.37246 1.39120 1.21263 0.75697 0.87700 0.80025 1.90817 1.39937 1.39544 1.69256 1.20755 1.06554 0.94833 1.00002 1.21134 0.96145 0.97052 0.92182 1.21628 0.98404 0.92070 1.01705 1.21987 0.92748 1.01157 0.92260 1.20807 1.00136 0.92512 0.97246 1.20726 0.97464 0.96123 0.94710 0.91070 0.93616 0.94653 0.93362 0.94763 0.90045 0.92708 0.93748 0.95037 0.74747 0.86182 0.81259 0.84718 0.81597 0.80584 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 7.53 71.98 0.54 -4.72 16 2 C 0.03 1.14 0.50 -52.93 -0.03 1.12 16 3 C -0.15 -5.07 7.52 71.98 0.54 -4.53 16 4 C -0.52 -28.78 8.62 25.60 0.22 -28.56 16 5 H 0.02 1.46 7.99 -2.91 -0.02 1.44 16 6 C 0.01 0.71 5.32 84.65 0.45 1.16 16 7 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 8 Si 0.95 41.95 22.79 68.60 1.56 43.51 16 9 H -0.28 -11.93 7.10 99.48 0.71 -11.22 16 10 H -0.32 -14.66 7.11 99.48 0.71 -13.96 16 11 H -0.20 -7.29 4.65 99.48 0.46 -6.82 16 12 C 0.16 6.14 4.49 86.38 0.39 6.53 16 13 N -0.71 -19.63 5.00 -463.07 -2.32 -21.95 16 14 C 0.50 13.97 7.74 87.66 0.68 14.65 16 15 O -0.59 -22.77 15.55 5.92 0.09 -22.68 16 16 C -0.13 -2.04 5.44 29.85 0.16 -1.88 16 17 C 0.13 2.55 3.14 29.88 0.09 2.64 16 18 H 0.13 2.53 7.92 -2.38 -0.02 2.51 16 19 O -0.33 -10.08 10.29 -48.79 -0.50 -10.59 16 20 C 0.51 15.01 8.58 70.24 0.60 15.61 16 21 O -0.51 -18.55 18.04 19.62 0.35 -18.20 16 22 C -0.22 -4.30 6.27 -20.16 -0.13 -4.43 16 23 C -0.05 -0.64 10.10 22.54 0.23 -0.41 16 24 C -0.12 -0.72 10.02 22.24 0.22 -0.49 16 25 C -0.06 -0.20 10.05 22.37 0.22 0.03 16 26 C -0.09 -0.51 10.03 22.17 0.22 -0.29 16 27 C -0.09 -1.25 5.67 -19.63 -0.11 -1.36 16 28 H 0.07 1.94 7.13 -2.39 -0.02 1.92 16 29 H 0.05 1.79 4.30 -2.38 -0.01 1.78 16 30 H 0.03 1.37 8.12 -2.39 -0.02 1.35 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 1.25 2.25 -2.38 -0.01 1.25 16 33 H 0.08 1.99 6.86 -2.39 -0.02 1.98 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 8.28 6.26 -92.70 -0.58 7.70 16 38 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.17 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.17 0.00 8.06 -2.91 -0.02 -0.02 16 42 H 0.18 -0.72 8.06 -2.91 -0.02 -0.74 16 43 H 0.17 -0.14 8.06 -2.91 -0.02 -0.16 16 Total: -1.00 -87.00 347.61 4.03 -82.97 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.22 Total: 10.87 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 4.31 Total: -4.92 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -2.02 Total: -80.97 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.06 Total: -51.47 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.56 Total: 43.51 kcal Total: -87.00 4.03 -82.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837886257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.063 kcal (2) G-P(sol) polarization free energy of solvation -86.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds