Wall clock time and date at job start Tue Mar 31 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50692 * 109.47248 * 2 1 4 4 C 1.50704 * 120.00106 * 274.99703 * 3 2 1 5 5 C 1.33083 * 120.00343 * 94.99921 * 3 2 1 6 6 C 1.46949 * 120.00375 * 185.54360 * 5 3 2 7 7 O 1.21534 * 119.99987 * 5.51369 * 6 5 3 8 8 O 1.34799 * 120.00091 * 185.51900 * 6 5 3 9 9 C 1.45204 * 116.99836 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.46775 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00126 * 359.71826 * 10 9 8 12 12 N 1.34779 * 119.99554 * 179.97438 * 10 9 8 13 13 C 1.39241 * 119.99902 * 176.03193 * 12 10 9 14 14 C 1.39475 * 119.83434 * 215.11469 * 13 12 10 15 15 C 1.36374 * 120.17119 * 179.75864 * 14 13 12 16 16 C 1.40873 * 119.82183 * 0.51705 * 15 14 13 17 17 C 1.41160 * 120.15855 * 179.71893 * 16 15 14 18 18 H 1.08000 * 119.99812 * 213.96560 * 17 16 15 19 19 C 1.39901 * 120.00115 * 33.96723 * 17 16 15 20 20 N 1.30869 * 120.00225 * 5.77192 * 19 17 16 21 21 Si 1.86797 * 119.99805 * 185.76732 * 19 17 16 22 22 H 1.48501 * 109.47382 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47191 * 120.00068 * 21 19 17 24 24 H 1.48505 * 109.47412 * 239.99816 * 21 19 17 25 25 C 1.40871 * 119.67530 * 359.73677 * 16 15 14 26 26 C 1.36370 * 119.82710 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46463 * 60.00024 * 1 2 3 28 28 H 1.08993 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47124 * 300.00789 * 1 2 3 30 30 H 1.09004 * 109.47124 * 239.99211 * 2 1 3 31 31 H 1.08999 * 109.46463 * 119.99975 * 2 1 3 32 32 H 1.09003 * 109.47411 * 234.84297 * 4 3 2 33 33 H 1.09004 * 109.46750 * 354.83975 * 4 3 2 34 34 H 1.08994 * 109.47458 * 114.83975 * 4 3 2 35 35 H 1.08000 * 119.99922 * 5.53987 * 5 3 2 36 36 H 1.08996 * 109.47341 * 59.99705 * 9 8 6 37 37 H 1.09004 * 109.46556 * 299.99297 * 9 8 6 38 38 H 0.96999 * 119.99857 * 356.02650 * 12 10 9 39 39 H 1.08001 * 119.91491 * 0.02562 * 14 13 12 40 40 H 1.07998 * 120.08902 * 180.25318 * 15 14 13 41 41 H 0.96998 * 120.00546 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.08546 * 179.97438 * 25 16 15 43 43 H 1.07998 * 119.91687 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1691 -1.3002 5 6 2.3489 2.0147 1.1481 6 6 2.7218 3.4360 1.1618 7 8 2.6449 4.0943 0.1431 8 8 3.1494 4.0097 2.3042 9 6 3.5001 5.4174 2.2438 10 6 3.9518 5.8813 3.6047 11 8 3.9708 5.1036 4.5350 12 7 4.3296 7.1619 3.7890 13 6 4.6678 7.6116 5.0626 14 6 4.3549 8.9163 5.4436 15 6 4.6785 9.3624 6.6910 16 6 5.3402 8.5049 7.5919 17 6 5.6838 8.9612 8.8828 18 1 6.5882 8.6094 9.3568 19 6 4.8528 9.8689 9.5481 20 7 3.7025 10.2083 9.0243 21 14 5.3850 10.5962 11.1843 22 1 6.7169 10.0553 11.5567 23 1 5.4671 12.0742 11.0657 24 1 4.3943 10.2380 12.2310 25 6 5.6576 7.1902 7.1980 26 6 5.3232 6.7569 5.9489 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1954 2.5451 -1.3921 33 1 1.9604 1.4979 -2.1315 34 1 1.4776 3.0054 -1.3174 35 1 2.3317 1.4521 2.0698 36 1 2.6299 5.9957 1.9335 37 1 4.3067 5.5603 1.5247 38 1 4.3660 7.7702 3.0343 39 1 3.8513 9.5737 4.7504 40 1 4.4320 10.3716 6.9860 41 1 3.1265 10.8379 9.4854 42 1 6.1652 6.5273 7.8831 43 1 5.5662 5.7494 5.6453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838038849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:37 Heat of formation + Delta-G solvation = -90.725795 kcal Electronic energy + Delta-G solvation = -24710.303384 eV Core-core repulsion = 20913.616404 eV Total energy + Delta-G solvation = -3796.686980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.68526 -39.57574 -37.61261 -37.01940 -35.92656 -34.46428 -32.99159 -31.47710 -29.94999 -29.55559 -28.67208 -27.67234 -24.97962 -24.45712 -22.13254 -21.54656 -20.81613 -19.83463 -18.90883 -17.92630 -17.39455 -17.13751 -16.71014 -16.09839 -15.90482 -15.23612 -15.09309 -14.87898 -14.55970 -14.08285 -13.88165 -13.60505 -13.30057 -13.04231 -12.78583 -12.69358 -12.57761 -12.51638 -12.12416 -12.07830 -11.81274 -11.79023 -11.42003 -11.37695 -11.16951 -11.03528 -10.80802 -10.75864 -10.35224 -10.00812 -9.57464 -9.53014 -9.45457 -9.18541 -8.93019 -7.58134 -6.93199 -6.68216 -4.34884 0.84231 2.32319 2.49176 2.73306 2.96033 3.05643 3.09265 3.14599 3.27923 3.70231 3.96431 4.28330 4.40759 4.66122 4.74535 4.77544 4.83200 4.93134 5.02551 5.06144 5.11774 5.22282 5.43661 5.46398 5.48749 5.63510 5.73211 5.74508 5.99658 6.08254 6.15635 6.30810 6.40669 6.68963 6.87597 7.03323 7.15735 7.25566 7.57336 7.60731 7.68326 7.82488 8.02843 8.18382 8.27131 8.56824 8.66321 8.89122 8.95999 10.26522 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.001939 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.734101 B =14439.378411 C =14736.099042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.019 4.019 4 C -0.124 4.124 5 C -0.206 4.206 6 C 0.495 3.505 7 O -0.514 6.514 8 O -0.326 6.326 9 C 0.053 3.947 10 C 0.498 3.502 11 O -0.508 6.508 12 N -0.646 5.646 13 C -0.001 4.001 14 C -0.116 4.116 15 C -0.141 4.141 16 C 0.106 3.894 17 C -0.462 4.462 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.807 5.807 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.207 4.207 26 C -0.082 4.082 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.278 0.722 42 H 0.097 0.903 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 -12.759 -17.982 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.020 4.020 4 C -0.180 4.180 5 C -0.225 4.225 6 C 0.342 3.658 7 O -0.405 6.405 8 O -0.241 6.241 9 C -0.024 4.024 10 C 0.283 3.717 11 O -0.383 6.383 12 N -0.290 5.290 13 C -0.093 4.093 14 C -0.136 4.136 15 C -0.160 4.160 16 C 0.103 3.897 17 C -0.492 4.492 18 H 0.096 0.904 19 C -0.145 4.145 20 N -0.434 5.434 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.227 4.227 26 C -0.101 4.101 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.159 0.841 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.231 0.769 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.728 -12.976 -17.535 22.321 hybrid contribution 0.052 0.862 0.385 0.945 sum -4.676 -12.114 -17.150 21.512 Atomic orbital electron populations 1.21727 0.93702 1.02379 1.02703 1.20795 0.96879 0.91927 1.03801 1.22706 0.88615 0.95685 0.94999 1.21138 1.03965 0.99858 0.93020 1.21710 1.09465 0.91265 1.00098 1.21575 0.74086 0.89311 0.80851 1.90833 1.50830 1.65220 1.33667 1.86667 1.75986 1.25344 1.36145 1.22689 1.02462 0.80180 0.97105 1.19957 0.79173 0.83295 0.89274 1.90736 1.51945 1.53241 1.42388 1.42777 1.66018 1.10397 1.09853 1.17184 1.10583 0.95657 0.85855 1.20257 1.02039 0.94049 0.97255 1.20930 1.03530 1.00360 0.91223 1.17721 0.89385 0.89896 0.92650 1.19553 1.07500 1.21984 1.00202 0.90408 1.25883 0.94097 0.94750 0.99755 1.69792 1.08120 1.27187 1.38308 0.86184 0.79786 0.79037 0.81203 1.18525 1.19899 1.20026 1.20786 1.09493 0.96029 0.96392 1.20404 0.97366 0.98186 0.94186 0.92237 0.91761 0.92081 0.90123 0.90206 0.90129 0.92303 0.89318 0.84115 0.88332 0.88474 0.76883 0.88959 0.86014 0.91069 0.88472 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.90 37.16 0.37 -0.40 16 2 C -0.10 -0.53 6.04 -27.88 -0.17 -0.70 16 3 C -0.02 -0.15 5.37 -101.14 -0.54 -0.70 16 4 C -0.12 -1.00 8.34 36.01 0.30 -0.70 16 5 C -0.21 -2.07 9.75 -37.85 -0.37 -2.44 16 6 C 0.49 6.37 7.83 34.26 0.27 6.64 16 7 O -0.51 -6.97 12.99 -19.29 -0.25 -7.22 16 8 O -0.33 -4.87 9.77 -47.45 -0.46 -5.33 16 9 C 0.05 0.72 5.96 36.01 0.21 0.93 16 10 C 0.50 8.83 7.73 -10.98 -0.08 8.74 16 11 O -0.51 -11.35 13.95 -14.10 -0.20 -11.54 16 12 N -0.65 -11.16 5.30 -9.74 -0.05 -11.21 16 13 C 0.00 -0.02 6.30 -83.57 -0.53 -0.55 16 14 C -0.12 -2.61 9.90 -39.79 -0.39 -3.00 16 15 C -0.14 -3.58 8.57 -39.26 -0.34 -3.92 16 16 C 0.11 2.84 5.51 -106.80 -0.59 2.25 16 17 C -0.46 -12.29 9.03 -37.85 -0.34 -12.63 16 18 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 19 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 20 N -0.81 -21.05 10.94 55.55 0.61 -20.44 16 21 Si 0.91 18.88 29.56 -169.99 -5.03 13.86 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 25 C -0.21 -5.25 9.74 -39.26 -0.38 -5.64 16 26 C -0.08 -1.96 8.61 -39.79 -0.34 -2.30 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 31 H 0.08 0.40 7.99 -51.93 -0.42 -0.02 16 32 H 0.08 0.74 7.40 -51.93 -0.38 0.35 16 33 H 0.06 0.35 7.98 -51.93 -0.41 -0.07 16 34 H 0.09 0.83 7.09 -51.93 -0.37 0.46 16 35 H 0.14 1.25 8.00 -52.49 -0.42 0.83 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.40 5.17 8.82 -40.82 -0.36 4.81 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.12 3.18 6.44 -52.49 -0.34 2.85 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.11 2.55 6.25 -52.49 -0.33 2.22 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -32.02 368.74 -8.79 -40.82 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.95 Total: 8.22 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.02 Total: -12.71 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.56 Total: -31.65 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.91 Total: -24.09 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.02 -8.79 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838038849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.907 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds