Wall clock time and date at job start Tue Mar 31 2020 12:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50692 * 109.47248 * 2 1 4 4 C 1.50704 * 120.00106 * 274.99703 * 3 2 1 5 5 C 1.33083 * 120.00343 * 94.99921 * 3 2 1 6 6 C 1.46949 * 120.00375 * 185.54360 * 5 3 2 7 7 O 1.21534 * 119.99987 * 5.51369 * 6 5 3 8 8 O 1.34799 * 120.00091 * 185.51900 * 6 5 3 9 9 C 1.45204 * 116.99836 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.46775 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00126 * 359.71826 * 10 9 8 12 12 N 1.34779 * 119.99554 * 179.97438 * 10 9 8 13 13 C 1.39241 * 119.99902 * 176.03193 * 12 10 9 14 14 C 1.39475 * 119.83434 * 215.11469 * 13 12 10 15 15 C 1.36374 * 120.17119 * 179.75864 * 14 13 12 16 16 C 1.40873 * 119.82183 * 0.51705 * 15 14 13 17 17 C 1.41160 * 120.15855 * 179.71893 * 16 15 14 18 18 H 1.08000 * 119.99812 * 213.96560 * 17 16 15 19 19 C 1.39901 * 120.00115 * 33.96723 * 17 16 15 20 20 N 1.30869 * 120.00225 * 5.77192 * 19 17 16 21 21 Si 1.86797 * 119.99805 * 185.76732 * 19 17 16 22 22 H 1.48501 * 109.47382 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47191 * 120.00068 * 21 19 17 24 24 H 1.48505 * 109.47412 * 239.99816 * 21 19 17 25 25 C 1.40871 * 119.67530 * 359.73677 * 16 15 14 26 26 C 1.36370 * 119.82710 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46463 * 60.00024 * 1 2 3 28 28 H 1.08993 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47124 * 300.00789 * 1 2 3 30 30 H 1.09004 * 109.47124 * 239.99211 * 2 1 3 31 31 H 1.08999 * 109.46463 * 119.99975 * 2 1 3 32 32 H 1.09003 * 109.47411 * 234.84297 * 4 3 2 33 33 H 1.09004 * 109.46750 * 354.83975 * 4 3 2 34 34 H 1.08994 * 109.47458 * 114.83975 * 4 3 2 35 35 H 1.08000 * 119.99922 * 5.53987 * 5 3 2 36 36 H 1.08996 * 109.47341 * 59.99705 * 9 8 6 37 37 H 1.09004 * 109.46556 * 299.99297 * 9 8 6 38 38 H 0.96999 * 119.99857 * 356.02650 * 12 10 9 39 39 H 1.08001 * 119.91491 * 0.02562 * 14 13 12 40 40 H 1.07998 * 120.08902 * 180.25318 * 15 14 13 41 41 H 0.96998 * 120.00546 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.08546 * 179.97438 * 25 16 15 43 43 H 1.07998 * 119.91687 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1691 -1.3002 5 6 2.3489 2.0147 1.1481 6 6 2.7218 3.4360 1.1618 7 8 2.6449 4.0943 0.1431 8 8 3.1494 4.0097 2.3042 9 6 3.5001 5.4174 2.2438 10 6 3.9518 5.8813 3.6047 11 8 3.9708 5.1036 4.5350 12 7 4.3296 7.1619 3.7890 13 6 4.6678 7.6116 5.0626 14 6 4.3549 8.9163 5.4436 15 6 4.6785 9.3624 6.6910 16 6 5.3402 8.5049 7.5919 17 6 5.6838 8.9612 8.8828 18 1 6.5882 8.6094 9.3568 19 6 4.8528 9.8689 9.5481 20 7 3.7025 10.2083 9.0243 21 14 5.3850 10.5962 11.1843 22 1 6.7169 10.0553 11.5567 23 1 5.4671 12.0742 11.0657 24 1 4.3943 10.2380 12.2310 25 6 5.6576 7.1902 7.1980 26 6 5.3232 6.7569 5.9489 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1954 2.5451 -1.3921 33 1 1.9604 1.4979 -2.1315 34 1 1.4776 3.0054 -1.3174 35 1 2.3317 1.4521 2.0698 36 1 2.6299 5.9957 1.9335 37 1 4.3067 5.5603 1.5247 38 1 4.3660 7.7702 3.0343 39 1 3.8513 9.5737 4.7504 40 1 4.4320 10.3716 6.9860 41 1 3.1265 10.8379 9.4854 42 1 6.1652 6.5273 7.8831 43 1 5.5662 5.7494 5.6453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838038849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:36 Heat of formation + Delta-G solvation = -107.849565 kcal Electronic energy + Delta-G solvation = -24711.045926 eV Core-core repulsion = 20913.616404 eV Total energy + Delta-G solvation = -3797.429523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.77638 -41.03475 -39.15663 -38.12687 -36.78802 -36.18963 -34.78917 -32.08213 -31.57822 -31.30835 -29.95203 -28.69353 -26.61375 -25.20761 -23.58607 -22.89660 -22.42728 -21.40581 -19.75136 -19.26967 -18.94917 -18.53169 -17.78146 -17.66742 -17.03810 -16.87717 -16.24807 -15.73310 -15.63607 -15.45045 -15.15289 -14.87120 -14.54490 -14.33087 -14.03699 -13.90955 -13.77836 -13.64001 -13.45491 -13.29833 -13.11083 -12.86237 -12.80961 -12.73001 -12.49501 -12.34159 -11.87743 -11.80124 -11.76623 -11.41676 -11.25049 -11.21826 -10.89220 -10.66406 -10.27463 -9.50057 -8.80684 -8.56158 -6.33592 0.06791 0.72833 1.10577 1.27878 1.39390 1.40103 1.54636 1.66702 1.85919 2.23498 2.44305 2.77707 3.54579 3.63090 3.68642 3.78616 3.97352 4.04151 4.15125 4.26149 4.37388 4.40227 4.48841 4.61927 4.72214 4.78628 4.89241 4.97941 5.07172 5.08829 5.10109 5.11459 5.18757 5.28677 5.35260 5.38520 5.45971 5.53470 5.65527 5.84598 5.97322 6.08571 6.35721 6.55530 6.64792 6.69461 6.93534 6.96108 7.25374 8.40379 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.001939 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.734101 B =14439.378411 C =14736.099042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C 0.004 3.996 4 C -0.125 4.125 5 C -0.234 4.234 6 C 0.492 3.508 7 O -0.526 6.526 8 O -0.351 6.351 9 C 0.062 3.938 10 C 0.500 3.500 11 O -0.558 6.558 12 N -0.635 5.635 13 C 0.015 3.985 14 C -0.112 4.112 15 C -0.157 4.157 16 C 0.074 3.926 17 C -0.499 4.499 18 H 0.074 0.926 19 C 0.030 3.970 20 N -0.839 5.839 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.262 1.262 24 H -0.269 1.269 25 C -0.223 4.223 26 C -0.094 4.094 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.422 0.578 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.286 0.714 42 H 0.096 0.904 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -13.297 -19.937 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C 0.003 3.997 4 C -0.181 4.181 5 C -0.253 4.253 6 C 0.341 3.659 7 O -0.419 6.419 8 O -0.267 6.267 9 C -0.015 4.015 10 C 0.287 3.713 11 O -0.436 6.436 12 N -0.282 5.282 13 C -0.078 4.078 14 C -0.132 4.132 15 C -0.177 4.177 16 C 0.071 3.929 17 C -0.529 4.529 18 H 0.092 0.908 19 C -0.183 4.183 20 N -0.467 5.467 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.187 1.187 24 H -0.194 1.194 25 C -0.243 4.243 26 C -0.114 4.114 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.260 0.740 39 H 0.147 0.853 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.483 -13.504 -19.553 24.387 hybrid contribution 0.232 0.899 0.776 1.209 sum -5.252 -12.606 -18.777 23.218 Atomic orbital electron populations 1.21734 0.93233 1.03247 1.02277 1.20905 0.97072 0.90207 1.05169 1.23048 0.85752 0.96668 0.94245 1.21153 1.02939 1.00065 0.93975 1.21787 1.12055 0.90181 1.01298 1.22028 0.73627 0.90135 0.80103 1.90821 1.51696 1.65651 1.33707 1.86658 1.76559 1.25927 1.37558 1.22665 1.04383 0.80235 0.94235 1.20703 0.77610 0.82513 0.90472 1.90722 1.53841 1.54533 1.44502 1.42640 1.65517 1.11072 1.08925 1.17235 1.08225 0.95055 0.87275 1.20526 1.01180 0.94686 0.96808 1.20931 1.04460 0.99890 0.92429 1.18042 0.90684 0.90664 0.93471 1.19770 1.08249 1.23960 1.00930 0.90808 1.26728 0.93722 0.94510 1.03330 1.69844 1.08994 1.27779 1.40044 0.85075 0.79266 0.78495 0.76321 1.18348 1.18657 1.19438 1.20907 1.10179 0.95966 0.97283 1.20521 0.98012 0.98551 0.94327 0.92057 0.90286 0.93161 0.88144 0.89514 0.91188 0.89693 0.90512 0.83523 0.85874 0.85539 0.73956 0.85307 0.87175 0.90319 0.88588 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 71.98 0.71 -0.47 16 2 C -0.10 -0.81 6.04 29.85 0.18 -0.63 16 3 C 0.00 0.05 5.37 -17.61 -0.09 -0.04 16 4 C -0.13 -1.78 8.34 71.24 0.59 -1.18 16 5 C -0.23 -4.47 9.75 23.40 0.23 -4.24 16 6 C 0.49 12.21 7.83 70.10 0.55 12.76 16 7 O -0.53 -13.55 12.99 19.72 0.26 -13.30 16 8 O -0.35 -10.16 9.77 -50.72 -0.50 -10.66 16 9 C 0.06 1.53 5.96 71.24 0.42 1.95 16 10 C 0.50 17.05 7.73 87.66 0.68 17.73 16 11 O -0.56 -24.98 13.95 15.79 0.22 -24.76 16 12 N -0.63 -20.67 5.30 -303.11 -1.61 -22.27 16 13 C 0.02 0.67 6.30 38.56 0.24 0.91 16 14 C -0.11 -4.95 9.90 22.13 0.22 -4.73 16 15 C -0.16 -8.15 8.57 22.48 0.19 -7.96 16 16 C 0.07 4.09 5.51 -21.27 -0.12 3.97 16 17 C -0.50 -27.53 9.03 23.39 0.21 -27.32 16 18 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 19 C 0.03 1.52 5.31 85.24 0.45 1.98 16 20 N -0.84 -44.55 10.94 21.82 0.24 -44.31 16 21 Si 0.99 39.11 29.56 68.60 2.03 41.14 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 25 C -0.22 -11.78 9.74 22.48 0.22 -11.56 16 26 C -0.09 -4.60 8.61 22.13 0.19 -4.41 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.10 0.50 8.11 -2.38 -0.02 0.48 16 31 H 0.09 0.66 7.99 -2.39 -0.02 0.64 16 32 H 0.07 1.18 7.40 -2.39 -0.02 1.16 16 33 H 0.08 0.75 7.98 -2.39 -0.02 0.73 16 34 H 0.08 1.32 7.09 -2.39 -0.02 1.31 16 35 H 0.15 2.53 8.00 -2.91 -0.02 2.51 16 36 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.42 9.63 8.82 -92.71 -0.82 8.81 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 40 H 0.11 5.91 6.44 -2.91 -0.02 5.89 16 41 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 42 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.11 5.19 6.25 -2.91 -0.02 5.17 16 Total: -1.00 -71.98 368.74 5.74 -66.24 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.22 Total: 31.18 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.88 Total: -23.27 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.37 Total: -66.59 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.02 Total: -48.71 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -71.98 5.74 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838038849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.607 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds