Wall clock time and date at job start Tue Mar 31 2020 11:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 110.85664 * 2 1 4 4 C 1.34228 * 116.99601 * 56.21493 * 3 2 1 5 5 O 1.20827 * 119.99950 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99760 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.46869 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47388 * 54.99927 * 7 6 4 9 9 C 1.50700 * 109.47408 * 295.00010 * 7 6 4 10 10 H 1.08005 * 119.99939 * 121.36667 * 9 7 6 11 11 C 1.37877 * 120.00212 * 301.36490 * 9 7 6 12 12 N 1.31515 * 119.99778 * 6.19675 * 11 9 7 13 13 Si 1.86793 * 120.00283 * 186.18831 * 11 9 7 14 14 H 1.48502 * 109.47014 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47134 * 120.00305 * 13 11 9 16 16 H 1.48496 * 109.47583 * 240.00175 * 13 11 9 17 17 C 1.50697 * 109.46816 * 175.00008 * 7 6 4 18 18 C 1.38239 * 120.00150 * 211.37107 * 17 7 6 19 19 C 1.38238 * 120.00140 * 179.76678 * 18 17 7 20 20 C 1.38235 * 119.99845 * 0.48720 * 19 18 17 21 21 C 1.38238 * 120.00063 * 359.79305 * 20 19 18 22 22 C 1.38236 * 120.00009 * 359.95097 * 21 20 19 23 23 C 1.54477 * 110.97253 * 123.83348 * 2 1 3 24 24 N 1.46761 * 105.47681 * 143.53578 * 23 2 1 25 25 C 1.34421 * 111.30192 * 342.98057 * 24 23 2 26 26 O 1.21274 * 124.94283 * 180.67051 * 25 24 23 27 27 C 1.51283 * 110.11301 * 0.41252 * 25 24 23 28 28 H 1.08999 * 109.46705 * 183.78816 * 1 2 3 29 29 H 1.08999 * 109.47011 * 303.78787 * 1 2 3 30 30 H 1.09000 * 109.47128 * 63.78977 * 1 2 3 31 31 H 1.08994 * 109.46895 * 299.99502 * 6 4 3 32 32 H 1.08996 * 109.46835 * 59.99924 * 6 4 3 33 33 H 0.96996 * 119.99958 * 180.02562 * 12 11 9 34 34 H 1.08007 * 119.99700 * 359.97438 * 18 17 7 35 35 H 1.08000 * 119.99805 * 180.25373 * 19 18 17 36 36 H 1.07997 * 119.99800 * 179.76830 * 20 19 18 37 37 H 1.07996 * 120.00173 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00048 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.24696 * 262.53711 * 23 2 1 40 40 H 1.09006 * 110.24474 * 24.44492 * 23 2 1 41 41 H 0.97000 * 124.34965 * 162.98537 * 24 23 2 42 42 H 1.09001 * 110.48711 * 134.92400 * 27 25 24 43 43 H 1.09001 * 110.48586 * 257.43958 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0470 1.3569 0.0000 4 6 1.6424 2.1631 0.9940 5 8 0.8812 1.7488 1.8360 6 6 2.1377 3.5849 1.0600 7 6 1.5290 4.2809 2.2790 8 1 1.7495 3.7018 3.1757 9 6 0.0360 4.3865 2.1038 10 1 -0.6260 3.9393 2.8307 11 6 -0.4850 5.0540 1.0157 12 7 0.3151 5.4925 0.0684 13 14 -2.3271 5.3354 0.8867 14 1 -3.0015 4.7496 2.0730 15 1 -2.6024 6.7936 0.8312 16 1 -2.8418 4.6873 -0.3462 17 6 2.1178 5.6614 2.4151 18 6 2.2707 6.2273 3.6670 19 6 2.8152 7.4917 3.7922 20 6 3.1974 8.1943 2.6648 21 6 3.0392 7.6308 1.4124 22 6 2.4996 6.3642 1.2876 23 6 2.0829 -0.8031 1.1982 24 7 3.2852 -1.4783 0.6957 25 6 3.3087 -1.4978 -0.6482 26 8 4.1825 -2.0032 -1.3203 27 6 2.0835 -0.8030 -1.2000 28 1 -0.3633 -1.0254 0.0679 29 1 -0.3633 0.5715 0.8541 30 1 -0.3633 0.4539 -0.9220 31 1 3.2243 3.5875 1.1446 32 1 1.8424 4.1148 0.1544 33 1 -0.0514 5.9624 -0.6969 34 1 1.9678 5.6801 4.5476 35 1 2.9384 7.9321 4.7706 36 1 3.6194 9.1837 2.7623 37 1 3.3374 8.1799 0.5316 38 1 2.3763 5.9238 0.3092 39 1 2.3419 -0.1305 2.0158 40 1 1.3485 -1.5363 1.5319 41 1 3.9743 -1.8614 1.2608 42 1 2.3593 -0.1318 -2.0134 43 1 1.3515 -1.5347 -1.5420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839001748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:30 Heat of formation + Delta-G solvation = -89.531852 kcal Electronic energy + Delta-G solvation = -27146.759206 eV Core-core repulsion = 23350.123999 eV Total energy + Delta-G solvation = -3796.635207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91699 -39.35073 -38.31649 -36.71564 -35.23955 -34.32871 -32.14139 -31.19412 -29.89829 -28.74724 -28.37781 -26.23666 -26.05924 -23.21305 -21.85923 -21.28953 -20.72537 -19.81624 -18.99160 -17.53868 -16.90118 -16.56248 -16.07671 -15.77821 -15.49783 -15.05234 -14.92272 -14.80694 -13.98028 -13.87827 -13.82908 -13.40440 -13.15310 -12.85909 -12.82119 -12.51117 -12.30028 -11.99440 -11.88209 -11.69093 -11.63149 -11.49565 -11.06443 -11.01373 -10.87882 -10.55746 -10.32090 -10.16965 -10.06775 -9.96422 -9.43535 -9.39574 -9.23245 -9.07429 -8.58023 -7.87901 -7.53720 -6.12513 -4.22502 2.40467 2.49412 2.53267 3.09542 3.18136 3.21595 3.28329 3.30901 3.35361 4.25268 4.27086 4.32204 4.59293 4.88341 5.05159 5.11709 5.26790 5.33701 5.49248 5.61141 5.65632 5.74678 5.82669 5.92206 5.93825 6.03557 6.24628 6.36818 6.44091 6.49158 6.63157 6.66430 6.68728 6.87098 6.91130 7.04128 7.14556 7.19782 7.37120 7.44881 7.62388 7.84259 7.98993 8.08625 8.15603 8.19898 8.66212 8.79459 9.42721 10.82220 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.004277 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.345187 B = 6544.834970 C = 7635.105101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 O -0.353 6.353 4 C 0.474 3.526 5 O -0.493 6.493 6 C -0.116 4.116 7 C 0.086 3.914 8 H 0.039 0.961 9 C -0.480 4.480 10 H 0.063 0.937 11 C 0.062 3.938 12 N -0.887 5.887 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.033 4.033 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.076 4.076 23 C 0.086 3.914 24 N -0.729 5.729 25 C 0.525 3.475 26 O -0.538 6.538 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.148 0.852 33 H 0.264 0.736 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.410 0.590 42 H 0.117 0.883 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 -6.730 0.544 7.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.074 3.926 3 O -0.272 6.272 4 C 0.318 3.682 5 O -0.379 6.379 6 C -0.154 4.154 7 C 0.068 3.932 8 H 0.057 0.943 9 C -0.517 4.517 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.526 5.526 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.034 4.034 18 C -0.148 4.148 19 C -0.160 4.160 20 C -0.170 4.170 21 C -0.161 4.161 22 C -0.095 4.095 23 C -0.039 4.039 24 N -0.385 5.385 25 C 0.311 3.689 26 O -0.416 6.416 27 C -0.187 4.187 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.167 0.833 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.248 0.752 42 H 0.135 0.865 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.013 -7.010 0.207 7.633 hybrid contribution -0.997 0.268 0.261 1.065 sum 2.016 -6.742 0.468 7.052 Atomic orbital electron populations 1.22431 0.91845 1.03460 1.05794 1.22677 0.95047 0.80979 0.93905 1.86680 1.67503 1.21692 1.51369 1.24274 0.78154 0.88326 0.77422 1.90504 1.32576 1.75380 1.39463 1.21933 0.98386 0.86801 1.08244 1.17693 0.95197 0.88131 0.92218 0.94270 1.21051 0.90097 1.32640 1.07890 0.91853 1.24905 0.98077 0.95295 0.95592 1.69517 1.34033 1.39090 1.09997 0.86503 0.85511 0.77942 0.77984 1.19757 1.20985 1.21117 1.20245 0.92579 0.98535 0.92005 1.20901 1.00982 0.95574 0.97344 1.20810 1.02245 0.95609 0.97377 1.20810 1.03674 0.99136 0.93341 1.21098 1.01843 0.96953 0.96194 1.21641 0.93831 0.93589 1.00433 1.22688 0.87089 0.96513 0.97589 1.46221 1.24884 1.59658 1.07715 1.20786 0.87091 0.78404 0.82614 1.90742 1.40518 1.47449 1.62852 1.22481 0.97168 0.99967 0.99039 0.91348 0.87881 0.91191 0.91832 0.83537 0.92555 0.87571 0.87979 0.88190 0.87924 0.83347 0.88963 0.89518 0.75151 0.86466 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.37 37.16 0.31 -2.03 16 2 C 0.11 1.53 1.01 -88.99 -0.09 1.44 16 3 O -0.35 -6.09 9.99 -39.25 -0.39 -6.48 16 4 C 0.47 9.23 6.85 36.01 0.25 9.47 16 5 O -0.49 -10.11 11.31 -18.75 -0.21 -10.32 16 6 C -0.12 -2.37 4.33 -27.88 -0.12 -2.49 16 7 C 0.09 1.92 1.98 -92.93 -0.18 1.74 16 8 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 9 C -0.48 -11.86 7.27 -34.44 -0.25 -12.11 16 10 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 11 C 0.06 1.52 5.14 -17.82 -0.09 1.43 16 12 N -0.89 -21.42 7.74 55.43 0.43 -20.99 16 13 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 C -0.03 -0.72 4.68 -104.62 -0.49 -1.21 16 18 C -0.13 -2.62 9.70 -39.58 -0.38 -3.00 16 19 C -0.14 -2.61 10.05 -39.58 -0.40 -3.00 16 20 C -0.15 -2.74 10.05 -39.58 -0.40 -3.13 16 21 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 22 C -0.08 -1.62 7.56 -39.58 -0.30 -1.92 16 23 C 0.09 1.03 6.65 -3.12 -0.02 1.01 16 24 N -0.73 -8.60 6.24 -59.20 -0.37 -8.97 16 25 C 0.52 7.33 8.43 -10.86 -0.09 7.24 16 26 O -0.54 -9.37 18.03 5.56 0.10 -9.27 16 27 C -0.15 -1.76 6.18 -26.74 -0.17 -1.92 16 28 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.10 1.67 5.64 -51.93 -0.29 1.38 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.15 3.25 4.65 -51.93 -0.24 3.01 16 33 H 0.26 6.24 8.31 -40.82 -0.34 5.91 16 34 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.15 3.25 4.97 -52.49 -0.26 2.99 16 39 H 0.09 1.24 6.82 -51.93 -0.35 0.88 16 40 H 0.09 0.86 7.82 -51.93 -0.41 0.46 16 41 H 0.41 4.06 8.96 -40.82 -0.37 3.69 16 42 H 0.12 1.42 8.11 -51.93 -0.42 1.00 16 43 H 0.12 1.11 7.90 -51.93 -0.41 0.70 16 LS Contribution 347.93 15.07 5.24 5.24 Total: -1.00 -28.11 347.93 -8.71 -36.81 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.66 Total: 10.43 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.82 Total: -11.62 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.06 Total: -29.96 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.50 Total: -26.07 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.11 -8.71 -36.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839001748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.717 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds