Wall clock time and date at job start Tue Mar 31 2020 11:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 110.85664 * 2 1 4 4 C 1.34228 * 116.99601 * 56.21493 * 3 2 1 5 5 O 1.20827 * 119.99950 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99760 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.46869 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47388 * 54.99927 * 7 6 4 9 9 C 1.50700 * 109.47408 * 295.00010 * 7 6 4 10 10 H 1.08005 * 119.99939 * 121.36667 * 9 7 6 11 11 C 1.37877 * 120.00212 * 301.36490 * 9 7 6 12 12 N 1.31515 * 119.99778 * 6.19675 * 11 9 7 13 13 Si 1.86793 * 120.00283 * 186.18831 * 11 9 7 14 14 H 1.48502 * 109.47014 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47134 * 120.00305 * 13 11 9 16 16 H 1.48496 * 109.47583 * 240.00175 * 13 11 9 17 17 C 1.50697 * 109.46816 * 175.00008 * 7 6 4 18 18 C 1.38239 * 120.00150 * 211.37107 * 17 7 6 19 19 C 1.38238 * 120.00140 * 179.76678 * 18 17 7 20 20 C 1.38235 * 119.99845 * 0.48720 * 19 18 17 21 21 C 1.38238 * 120.00063 * 359.79305 * 20 19 18 22 22 C 1.38236 * 120.00009 * 359.95097 * 21 20 19 23 23 C 1.54477 * 110.97253 * 123.83348 * 2 1 3 24 24 N 1.46761 * 105.47681 * 143.53578 * 23 2 1 25 25 C 1.34421 * 111.30192 * 342.98057 * 24 23 2 26 26 O 1.21274 * 124.94283 * 180.67051 * 25 24 23 27 27 C 1.51283 * 110.11301 * 0.41252 * 25 24 23 28 28 H 1.08999 * 109.46705 * 183.78816 * 1 2 3 29 29 H 1.08999 * 109.47011 * 303.78787 * 1 2 3 30 30 H 1.09000 * 109.47128 * 63.78977 * 1 2 3 31 31 H 1.08994 * 109.46895 * 299.99502 * 6 4 3 32 32 H 1.08996 * 109.46835 * 59.99924 * 6 4 3 33 33 H 0.96996 * 119.99958 * 180.02562 * 12 11 9 34 34 H 1.08007 * 119.99700 * 359.97438 * 18 17 7 35 35 H 1.08000 * 119.99805 * 180.25373 * 19 18 17 36 36 H 1.07997 * 119.99800 * 179.76830 * 20 19 18 37 37 H 1.07996 * 120.00173 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00048 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.24696 * 262.53711 * 23 2 1 40 40 H 1.09006 * 110.24474 * 24.44492 * 23 2 1 41 41 H 0.97000 * 124.34965 * 162.98537 * 24 23 2 42 42 H 1.09001 * 110.48711 * 134.92400 * 27 25 24 43 43 H 1.09001 * 110.48586 * 257.43958 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0470 1.3569 0.0000 4 6 1.6424 2.1631 0.9940 5 8 0.8812 1.7488 1.8360 6 6 2.1377 3.5849 1.0600 7 6 1.5290 4.2809 2.2790 8 1 1.7495 3.7018 3.1757 9 6 0.0360 4.3865 2.1038 10 1 -0.6260 3.9393 2.8307 11 6 -0.4850 5.0540 1.0157 12 7 0.3151 5.4925 0.0684 13 14 -2.3271 5.3354 0.8867 14 1 -3.0015 4.7496 2.0730 15 1 -2.6024 6.7936 0.8312 16 1 -2.8418 4.6873 -0.3462 17 6 2.1178 5.6614 2.4151 18 6 2.2707 6.2273 3.6670 19 6 2.8152 7.4917 3.7922 20 6 3.1974 8.1943 2.6648 21 6 3.0392 7.6308 1.4124 22 6 2.4996 6.3642 1.2876 23 6 2.0829 -0.8031 1.1982 24 7 3.2852 -1.4783 0.6957 25 6 3.3087 -1.4978 -0.6482 26 8 4.1825 -2.0032 -1.3203 27 6 2.0835 -0.8030 -1.2000 28 1 -0.3633 -1.0254 0.0679 29 1 -0.3633 0.5715 0.8541 30 1 -0.3633 0.4539 -0.9220 31 1 3.2243 3.5875 1.1446 32 1 1.8424 4.1148 0.1544 33 1 -0.0514 5.9624 -0.6969 34 1 1.9678 5.6801 4.5476 35 1 2.9384 7.9321 4.7706 36 1 3.6194 9.1837 2.7623 37 1 3.3374 8.1799 0.5316 38 1 2.3763 5.9238 0.3092 39 1 2.3419 -0.1305 2.0158 40 1 1.3485 -1.5363 1.5319 41 1 3.9743 -1.8614 1.2608 42 1 2.3593 -0.1318 -2.0134 43 1 1.3515 -1.5347 -1.5420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839001748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:29 Heat of formation + Delta-G solvation = -104.707704 kcal Electronic energy + Delta-G solvation = -27147.417281 eV Core-core repulsion = 23350.123999 eV Total energy + Delta-G solvation = -3797.293281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13873 -40.69193 -39.82037 -38.02970 -36.56195 -35.98777 -33.30075 -32.90405 -31.41317 -30.23084 -29.46595 -27.95602 -27.13092 -24.83659 -23.32467 -22.72456 -21.76800 -21.31786 -20.43719 -18.68732 -18.39280 -18.03077 -17.57102 -17.13445 -16.94475 -16.61134 -16.27643 -16.00740 -15.49692 -15.40037 -15.06260 -14.78706 -14.58767 -14.18938 -13.95671 -13.80715 -13.63917 -13.45955 -13.27878 -13.16394 -12.95656 -12.91504 -12.79684 -12.63105 -12.28186 -12.19735 -11.91486 -11.74453 -11.48072 -11.21359 -11.09493 -11.01266 -10.65944 -10.41475 -10.24624 -9.40586 -9.12313 -7.96958 -6.12488 0.87178 0.98286 1.38749 1.43867 1.44824 1.52235 1.60901 1.86049 2.29301 2.46053 3.20038 3.20290 3.22636 3.35867 3.52910 3.96170 4.08150 4.32743 4.40677 4.44261 4.49804 4.51339 4.62323 4.64352 4.66216 4.73637 4.85391 4.85846 4.94416 5.06477 5.14107 5.29244 5.37756 5.51627 5.57744 5.65885 5.66747 5.72052 5.89300 5.92444 5.94134 6.10432 6.34095 6.39759 6.57178 6.85126 7.11589 7.19924 7.52299 8.93362 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.004277 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.345187 B = 6544.834970 C = 7635.105101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 O -0.361 6.361 4 C 0.477 3.523 5 O -0.508 6.508 6 C -0.112 4.112 7 C 0.089 3.911 8 H 0.027 0.973 9 C -0.493 4.493 10 H 0.040 0.960 11 C 0.035 3.965 12 N -0.887 5.887 13 Si 0.931 3.069 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.281 1.281 17 C -0.055 4.055 18 C -0.147 4.147 19 C -0.140 4.140 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.092 4.092 23 C 0.091 3.909 24 N -0.718 5.718 25 C 0.520 3.480 26 O -0.577 6.577 27 C -0.137 4.137 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.263 0.737 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.419 0.581 42 H 0.115 0.885 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 -6.533 0.598 7.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 O -0.280 6.280 4 C 0.321 3.679 5 O -0.395 6.395 6 C -0.150 4.150 7 C 0.070 3.930 8 H 0.046 0.954 9 C -0.531 4.531 10 H 0.058 0.942 11 C -0.165 4.165 12 N -0.526 5.526 13 Si 0.759 3.241 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.207 1.207 17 C -0.056 4.056 18 C -0.165 4.165 19 C -0.158 4.158 20 C -0.166 4.166 21 C -0.168 4.168 22 C -0.110 4.110 23 C -0.034 4.034 24 N -0.373 5.373 25 C 0.308 3.692 26 O -0.458 6.458 27 C -0.176 4.176 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.149 0.851 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.141 0.859 38 H 0.153 0.847 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.259 0.741 42 H 0.133 0.867 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.124 -6.813 0.276 7.500 hybrid contribution -0.994 0.211 0.286 1.055 sum 2.131 -6.602 0.562 6.960 Atomic orbital electron populations 1.22376 0.91187 1.05283 1.04164 1.23048 0.95666 0.79360 0.95653 1.86625 1.67522 1.23518 1.50296 1.23974 0.77871 0.88326 0.77709 1.90500 1.33061 1.75784 1.40136 1.21742 0.99076 0.87564 1.06618 1.17590 0.94089 0.88959 0.92342 0.95428 1.21025 0.91258 1.33112 1.07669 0.94172 1.25276 1.00114 0.95486 0.95635 1.69635 1.34312 1.38862 1.09786 0.85914 0.83152 0.77428 0.77601 1.20491 1.21204 1.20714 1.20268 0.93977 0.98318 0.93031 1.21111 1.01626 0.96754 0.96977 1.21183 1.00793 0.94700 0.99155 1.21217 1.02450 1.00376 0.92554 1.21383 1.01282 0.96298 0.97808 1.21575 0.95078 0.94701 0.99669 1.22697 0.87566 0.96772 0.96339 1.46189 1.25033 1.58761 1.07329 1.21072 0.87109 0.78014 0.83011 1.90727 1.41974 1.49373 1.63714 1.22532 0.97014 1.00097 0.98004 0.87569 0.91032 0.91439 0.90536 0.85071 0.92679 0.87171 0.84849 0.84760 0.85905 0.84691 0.90393 0.86567 0.74104 0.86653 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 8.37 71.98 0.60 -3.68 16 2 C 0.10 2.59 1.01 -9.73 -0.01 2.58 16 3 O -0.36 -12.40 9.99 -51.40 -0.51 -12.91 16 4 C 0.48 18.90 6.85 71.24 0.49 19.39 16 5 O -0.51 -21.28 11.31 21.96 0.25 -21.03 16 6 C -0.11 -4.71 4.33 29.85 0.13 -4.59 16 7 C 0.09 4.08 1.98 -12.29 -0.02 4.05 16 8 H 0.03 1.27 7.89 -2.39 -0.02 1.25 16 9 C -0.49 -25.08 7.27 25.60 0.19 -24.89 16 10 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 11 C 0.03 1.73 5.14 84.65 0.44 2.16 16 12 N -0.89 -43.30 7.74 21.45 0.17 -43.14 16 13 Si 0.93 41.67 29.54 68.60 2.03 43.70 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 17 C -0.06 -2.42 4.68 -19.87 -0.09 -2.52 16 18 C -0.15 -5.83 9.70 22.27 0.22 -5.61 16 19 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 20 C -0.15 -4.92 10.05 22.27 0.22 -4.69 16 21 C -0.15 -5.49 10.05 22.27 0.22 -5.27 16 22 C -0.09 -3.87 7.56 22.27 0.17 -3.70 16 23 C 0.09 2.04 6.65 86.83 0.58 2.61 16 24 N -0.72 -15.84 6.24 -459.81 -2.87 -18.71 16 25 C 0.52 13.82 8.43 87.90 0.74 14.56 16 26 O -0.58 -19.71 18.03 -3.01 -0.05 -19.77 16 27 C -0.14 -3.01 6.18 30.59 0.19 -2.82 16 28 H 0.11 1.78 8.05 -2.39 -0.02 1.76 16 29 H 0.07 2.30 5.64 -2.39 -0.01 2.28 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.13 6.00 4.65 -2.39 -0.01 5.98 16 33 H 0.26 12.50 8.31 -92.71 -0.77 11.73 16 34 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 36 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 37 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 38 H 0.14 6.01 4.97 -2.91 -0.01 5.99 16 39 H 0.08 2.04 6.82 -2.39 -0.02 2.03 16 40 H 0.12 1.98 7.82 -2.38 -0.02 1.96 16 41 H 0.42 7.74 8.96 -92.71 -0.83 6.91 16 42 H 0.12 2.64 8.11 -2.39 -0.02 2.62 16 43 H 0.16 2.33 7.90 -2.39 -0.02 2.31 16 Total: -1.00 -61.38 347.93 3.50 -57.88 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.21 Total: 30.97 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.28 Total: -16.99 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -2.70 Total: -61.85 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.32 Total: -53.71 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -61.38 3.50 -57.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839001748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.828 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds