Wall clock time and date at job start Tue Mar 31 2020 11:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 110.85873 * 2 1 4 4 C 1.34228 * 116.99951 * 300.70603 * 3 2 1 5 5 O 1.20830 * 120.00121 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00316 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47329 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46882 * 54.99860 * 7 6 4 9 9 C 1.50694 * 109.47026 * 294.99904 * 7 6 4 10 10 H 1.07999 * 119.99829 * 325.83462 * 9 7 6 11 11 C 1.37878 * 120.00257 * 145.83745 * 9 7 6 12 12 N 1.31520 * 119.99737 * 6.11569 * 11 9 7 13 13 Si 1.86797 * 120.00007 * 186.11124 * 11 9 7 14 14 H 1.48501 * 109.47068 * 60.00219 * 13 11 9 15 15 H 1.48501 * 109.47049 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47386 * 300.00178 * 13 11 9 17 17 C 1.50698 * 109.46966 * 174.99505 * 7 6 4 18 18 C 1.38240 * 119.99708 * 63.46532 * 17 7 6 19 19 C 1.38240 * 119.99649 * 179.80810 * 18 17 7 20 20 C 1.38241 * 119.99705 * 0.39768 * 19 18 17 21 21 C 1.38236 * 120.00253 * 359.85659 * 20 19 18 22 22 C 1.38226 * 119.99736 * 359.95374 * 21 20 19 23 23 C 1.54481 * 110.96841 * 236.20988 * 2 1 3 24 24 N 1.46857 * 105.42625 * 216.43886 * 23 2 1 25 25 C 1.34418 * 111.31420 * 17.02185 * 24 23 2 26 26 O 1.21273 * 124.95095 * 179.54979 * 25 24 23 27 27 C 1.51286 * 110.11023 * 359.58398 * 25 24 23 28 28 H 1.08997 * 109.47564 * 59.29520 * 1 2 3 29 29 H 1.08998 * 109.46818 * 179.29988 * 1 2 3 30 30 H 1.09003 * 109.46871 * 299.29643 * 1 2 3 31 31 H 1.09009 * 109.46338 * 299.99339 * 6 4 3 32 32 H 1.08997 * 109.47095 * 59.99140 * 6 4 3 33 33 H 0.96999 * 119.99521 * 180.02562 * 12 11 9 34 34 H 1.07991 * 119.99834 * 359.97438 * 18 17 7 35 35 H 1.07993 * 119.99745 * 180.22884 * 19 18 17 36 36 H 1.08002 * 119.99483 * 179.83798 * 20 19 18 37 37 H 1.07995 * 119.99727 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.99758 * 180.02562 * 22 21 20 39 39 H 1.09002 * 110.24507 * 335.43373 * 23 2 1 40 40 H 1.09001 * 110.24510 * 97.42794 * 23 2 1 41 41 H 0.97000 * 124.34396 * 197.01965 * 24 23 2 42 42 H 1.09001 * 110.48705 * 225.06782 * 27 25 24 43 43 H 1.09007 * 110.59894 * 102.48265 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0470 1.3568 0.0000 4 6 1.6933 2.1437 -1.0283 5 8 0.9758 1.7129 -1.8998 6 6 2.1920 3.5642 -1.0965 7 6 1.6467 4.2362 -2.3583 8 1 0.5597 4.1560 -2.3718 9 6 2.2159 3.5550 -3.5760 10 1 3.2211 3.1607 -3.5539 11 6 1.4534 3.4352 -4.7185 12 7 0.2768 4.0188 -4.7881 13 14 2.0915 2.4440 -6.1676 14 1 2.3245 1.0402 -5.7429 15 1 1.0902 2.4692 -7.2639 16 1 3.3669 3.0340 -6.6477 17 6 2.0432 5.6901 -2.3644 18 6 3.3788 6.0419 -2.4221 19 6 3.7424 7.3756 -2.4317 20 6 2.7707 8.3573 -2.3755 21 6 1.4353 8.0053 -2.3125 22 6 1.0717 6.6717 -2.3068 23 6 2.0828 -0.8023 -1.1988 24 7 3.2861 -1.4773 -0.6956 25 6 3.3093 -1.4971 0.6482 26 8 4.1850 -1.9988 1.3206 27 6 2.0835 -0.8030 1.1999 28 1 -0.3634 0.5247 -0.8835 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8963 31 1 1.8517 4.1113 -0.2171 32 1 3.2815 3.5658 -1.1263 33 1 -0.2597 3.9341 -5.5917 34 1 4.1380 5.2750 -2.4623 35 1 4.7856 7.6506 -2.4805 36 1 3.0549 9.3992 -2.3804 37 1 0.6763 8.7722 -2.2681 38 1 0.0284 6.3967 -2.2581 39 1 1.3493 -1.5366 -1.5317 40 1 2.3413 -0.1290 -2.0162 41 1 3.9756 -1.8598 -1.2605 42 1 2.3588 -0.1320 2.0136 43 1 1.3499 -1.5337 1.5409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839001751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:41 Heat of formation + Delta-G solvation = -97.275472 kcal Electronic energy + Delta-G solvation = -26916.730876 eV Core-core repulsion = 23119.759880 eV Total energy + Delta-G solvation = -3796.970996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97767 -39.39345 -38.40430 -36.76788 -35.28364 -34.11645 -32.22946 -31.54704 -30.06158 -29.04641 -28.47116 -26.18199 -25.84745 -23.33270 -21.90382 -21.54994 -20.72937 -19.79871 -19.06508 -17.53475 -16.96384 -16.67226 -16.31692 -15.75533 -15.62321 -15.18954 -14.92259 -14.55779 -14.24925 -13.95461 -13.86543 -13.43138 -13.28510 -12.88622 -12.72716 -12.61593 -12.44528 -12.18941 -12.05511 -11.97336 -11.71589 -11.63272 -11.21420 -10.96431 -10.84011 -10.70700 -10.32683 -10.25926 -10.16357 -10.00429 -9.58612 -9.42057 -9.17834 -9.12568 -8.48576 -8.09321 -7.68991 -6.06615 -4.07938 2.23932 2.27614 2.52374 2.97484 3.00681 3.28951 3.30156 3.33585 3.35621 4.21241 4.22263 4.39855 4.53562 4.68723 4.97143 5.12806 5.31019 5.32381 5.50016 5.55082 5.60426 5.62671 5.67541 5.78597 5.79421 5.92474 5.99633 6.03755 6.21069 6.28510 6.35825 6.44130 6.63602 6.67147 6.83309 6.90634 6.93786 7.04068 7.26525 7.33617 7.43870 7.72911 7.86294 7.94367 8.15949 8.23179 8.55425 8.92346 9.55157 11.03017 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004309 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.951719 B = 6496.725021 C = 7521.655331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.112 3.888 3 O -0.357 6.357 4 C 0.459 3.541 5 O -0.460 6.460 6 C -0.097 4.097 7 C 0.078 3.922 8 H 0.075 0.925 9 C -0.502 4.502 10 H 0.051 0.949 11 C 0.082 3.918 12 N -0.878 5.878 13 Si 0.886 3.114 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.279 1.279 17 C -0.023 4.023 18 C -0.114 4.114 19 C -0.131 4.131 20 C -0.153 4.153 21 C -0.128 4.128 22 C -0.117 4.117 23 C 0.081 3.919 24 N -0.728 5.728 25 C 0.523 3.477 26 O -0.540 6.540 27 C -0.145 4.145 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.261 0.739 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.411 0.589 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -3.338 8.689 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.075 3.925 3 O -0.277 6.277 4 C 0.301 3.699 5 O -0.343 6.343 6 C -0.135 4.135 7 C 0.059 3.941 8 H 0.093 0.907 9 C -0.539 4.539 10 H 0.070 0.930 11 C -0.122 4.122 12 N -0.514 5.514 13 Si 0.714 3.286 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.023 4.023 18 C -0.132 4.132 19 C -0.149 4.149 20 C -0.172 4.172 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.044 4.044 24 N -0.383 5.383 25 C 0.310 3.690 26 O -0.417 6.417 27 C -0.185 4.185 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.250 0.750 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.154 -3.691 8.695 9.448 hybrid contribution 0.561 -0.646 -1.519 1.743 sum 0.716 -4.337 7.176 8.416 Atomic orbital electron populations 1.22358 0.91932 1.03619 1.05223 1.22692 0.94850 0.80742 0.94260 1.86643 1.69889 1.22595 1.48588 1.23977 0.78703 0.88790 0.78458 1.90671 1.32786 1.74124 1.36707 1.21670 1.02297 0.87488 1.02022 1.17894 0.99581 0.86239 0.90341 0.90730 1.20669 0.99799 1.36777 0.96672 0.93034 1.24800 0.94654 0.94582 0.98210 1.69898 1.11181 1.42150 1.28215 0.86762 0.78537 0.80979 0.82283 1.20315 1.21349 1.20447 1.20603 0.92260 0.97501 0.91984 1.20956 0.96539 0.95076 1.00669 1.20985 0.98287 0.93563 1.02078 1.20820 0.93417 0.98182 1.04737 1.20984 0.95624 0.96190 1.01810 1.21070 0.99451 0.92217 1.00794 1.22785 0.87097 0.96745 0.97743 1.46257 1.24893 1.59463 1.07658 1.20754 0.87110 0.78508 0.82663 1.90743 1.40433 1.47679 1.62847 1.22468 0.97314 0.99922 0.98806 0.88558 0.90986 0.91201 0.90327 0.89377 0.92901 0.86852 0.87589 0.87735 0.87566 0.86774 0.89484 0.88076 0.75024 0.86580 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 8.35 37.16 0.31 -1.69 16 2 C 0.11 1.44 1.01 -88.99 -0.09 1.35 16 3 O -0.36 -5.59 9.99 -39.25 -0.39 -5.98 16 4 C 0.46 8.37 6.85 36.01 0.25 8.61 16 5 O -0.46 -9.56 11.29 -18.75 -0.21 -9.77 16 6 C -0.10 -1.77 5.06 -27.88 -0.14 -1.91 16 7 C 0.08 1.73 1.67 -92.93 -0.16 1.57 16 8 H 0.07 1.87 6.98 -51.93 -0.36 1.51 16 9 C -0.50 -12.49 6.37 -34.44 -0.22 -12.71 16 10 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 11 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 12 N -0.88 -24.16 12.87 55.43 0.71 -23.45 16 13 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 18 C -0.11 -2.21 8.86 -39.58 -0.35 -2.56 16 19 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 20 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 21 C -0.13 -2.26 10.05 -39.59 -0.40 -2.66 16 22 C -0.12 -2.34 9.67 -39.59 -0.38 -2.73 16 23 C 0.08 1.04 6.62 -3.07 -0.02 1.02 16 24 N -0.73 -9.11 6.24 -59.14 -0.37 -9.48 16 25 C 0.52 7.28 8.43 -10.86 -0.09 7.19 16 26 O -0.54 -9.35 18.03 5.56 0.10 -9.25 16 27 C -0.15 -1.61 6.18 -26.74 -0.17 -1.78 16 28 H 0.10 1.39 5.94 -51.93 -0.31 1.09 16 29 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.09 1.53 7.77 -51.93 -0.40 1.12 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.11 2.12 7.76 -52.49 -0.41 1.71 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.11 2.28 7.95 -52.48 -0.42 1.86 16 39 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16 40 H 0.10 1.58 6.55 -51.93 -0.34 1.24 16 41 H 0.41 4.55 8.96 -40.82 -0.37 4.19 16 42 H 0.12 1.24 8.11 -51.93 -0.42 0.82 16 43 H 0.12 1.00 7.89 -51.92 -0.41 0.59 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -30.67 359.21 -8.54 -39.21 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.93 Total: 8.31 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.85 Total: -10.85 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.34 Total: -32.93 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.50 Total: -25.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.67 -8.54 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839001751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.063 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds