Wall clock time and date at job start Tue Mar 31 2020 11:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 110.85873 * 2 1 4 4 C 1.34228 * 116.99951 * 300.70603 * 3 2 1 5 5 O 1.20830 * 120.00121 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00316 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47329 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46882 * 54.99860 * 7 6 4 9 9 C 1.50694 * 109.47026 * 294.99904 * 7 6 4 10 10 H 1.07999 * 119.99829 * 325.83462 * 9 7 6 11 11 C 1.37878 * 120.00257 * 145.83745 * 9 7 6 12 12 N 1.31520 * 119.99737 * 6.11569 * 11 9 7 13 13 Si 1.86797 * 120.00007 * 186.11124 * 11 9 7 14 14 H 1.48501 * 109.47068 * 60.00219 * 13 11 9 15 15 H 1.48501 * 109.47049 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47386 * 300.00178 * 13 11 9 17 17 C 1.50698 * 109.46966 * 174.99505 * 7 6 4 18 18 C 1.38240 * 119.99708 * 63.46532 * 17 7 6 19 19 C 1.38240 * 119.99649 * 179.80810 * 18 17 7 20 20 C 1.38241 * 119.99705 * 0.39768 * 19 18 17 21 21 C 1.38236 * 120.00253 * 359.85659 * 20 19 18 22 22 C 1.38226 * 119.99736 * 359.95374 * 21 20 19 23 23 C 1.54481 * 110.96841 * 236.20988 * 2 1 3 24 24 N 1.46857 * 105.42625 * 216.43886 * 23 2 1 25 25 C 1.34418 * 111.31420 * 17.02185 * 24 23 2 26 26 O 1.21273 * 124.95095 * 179.54979 * 25 24 23 27 27 C 1.51286 * 110.11023 * 359.58398 * 25 24 23 28 28 H 1.08997 * 109.47564 * 59.29520 * 1 2 3 29 29 H 1.08998 * 109.46818 * 179.29988 * 1 2 3 30 30 H 1.09003 * 109.46871 * 299.29643 * 1 2 3 31 31 H 1.09009 * 109.46338 * 299.99339 * 6 4 3 32 32 H 1.08997 * 109.47095 * 59.99140 * 6 4 3 33 33 H 0.96999 * 119.99521 * 180.02562 * 12 11 9 34 34 H 1.07991 * 119.99834 * 359.97438 * 18 17 7 35 35 H 1.07993 * 119.99745 * 180.22884 * 19 18 17 36 36 H 1.08002 * 119.99483 * 179.83798 * 20 19 18 37 37 H 1.07995 * 119.99727 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.99758 * 180.02562 * 22 21 20 39 39 H 1.09002 * 110.24507 * 335.43373 * 23 2 1 40 40 H 1.09001 * 110.24510 * 97.42794 * 23 2 1 41 41 H 0.97000 * 124.34396 * 197.01965 * 24 23 2 42 42 H 1.09001 * 110.48705 * 225.06782 * 27 25 24 43 43 H 1.09007 * 110.59894 * 102.48265 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0470 1.3568 0.0000 4 6 1.6933 2.1437 -1.0283 5 8 0.9758 1.7129 -1.8998 6 6 2.1920 3.5642 -1.0965 7 6 1.6467 4.2362 -2.3583 8 1 0.5597 4.1560 -2.3718 9 6 2.2159 3.5550 -3.5760 10 1 3.2211 3.1607 -3.5539 11 6 1.4534 3.4352 -4.7185 12 7 0.2768 4.0188 -4.7881 13 14 2.0915 2.4440 -6.1676 14 1 2.3245 1.0402 -5.7429 15 1 1.0902 2.4692 -7.2639 16 1 3.3669 3.0340 -6.6477 17 6 2.0432 5.6901 -2.3644 18 6 3.3788 6.0419 -2.4221 19 6 3.7424 7.3756 -2.4317 20 6 2.7707 8.3573 -2.3755 21 6 1.4353 8.0053 -2.3125 22 6 1.0717 6.6717 -2.3068 23 6 2.0828 -0.8023 -1.1988 24 7 3.2861 -1.4773 -0.6956 25 6 3.3093 -1.4971 0.6482 26 8 4.1850 -1.9988 1.3206 27 6 2.0835 -0.8030 1.1999 28 1 -0.3634 0.5247 -0.8835 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8963 31 1 1.8517 4.1113 -0.2171 32 1 3.2815 3.5658 -1.1263 33 1 -0.2597 3.9341 -5.5917 34 1 4.1380 5.2750 -2.4623 35 1 4.7856 7.6506 -2.4805 36 1 3.0549 9.3992 -2.3804 37 1 0.6763 8.7722 -2.2681 38 1 0.0284 6.3967 -2.2581 39 1 1.3493 -1.5366 -1.5317 40 1 2.3413 -0.1290 -2.0162 41 1 3.9756 -1.8598 -1.2605 42 1 2.3588 -0.1320 2.0136 43 1 1.3499 -1.5337 1.5409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839001751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:40 Heat of formation + Delta-G solvation = -115.356150 kcal Electronic energy + Delta-G solvation = -26917.514913 eV Core-core repulsion = 23119.759880 eV Total energy + Delta-G solvation = -3797.755033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16604 -40.69078 -39.84229 -38.05230 -36.55760 -35.78307 -33.55586 -33.11024 -31.49163 -30.46977 -29.46693 -27.71883 -27.12510 -24.95966 -23.27851 -22.92377 -21.76003 -21.24900 -20.45764 -18.66833 -18.53172 -18.20244 -17.59392 -17.10955 -16.98042 -16.56670 -16.30515 -15.99450 -15.68765 -15.44570 -15.01280 -14.79365 -14.55184 -14.14104 -14.02099 -13.90325 -13.77310 -13.67551 -13.43764 -13.21519 -12.94337 -12.87584 -12.81616 -12.59659 -12.52231 -12.21976 -11.82647 -11.71911 -11.52431 -11.34697 -11.19478 -10.98300 -10.75858 -10.43599 -10.26231 -9.53023 -9.19964 -8.05228 -6.08847 0.79166 0.83627 1.38789 1.40516 1.43663 1.45221 1.55493 1.77151 2.27911 2.45759 3.18254 3.19091 3.21671 3.35406 3.52449 3.89113 4.05192 4.25167 4.36436 4.39467 4.43472 4.52899 4.53865 4.56128 4.62239 4.64599 4.71754 4.78133 4.91088 4.94647 4.98970 5.18436 5.31480 5.37737 5.50351 5.61901 5.63003 5.64758 5.78248 5.85195 5.89156 5.95061 6.15622 6.39628 6.47107 6.98161 7.09680 7.15554 7.55083 9.03655 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004309 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.951719 B = 6496.725021 C = 7521.655331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.103 3.897 3 O -0.357 6.357 4 C 0.464 3.536 5 O -0.491 6.491 6 C -0.095 4.095 7 C 0.083 3.917 8 H 0.036 0.964 9 C -0.494 4.494 10 H 0.047 0.953 11 C 0.034 3.966 12 N -0.911 5.911 13 Si 0.931 3.069 14 H -0.275 1.275 15 H -0.290 1.290 16 H -0.275 1.275 17 C -0.046 4.046 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.129 4.129 22 C -0.139 4.139 23 C 0.083 3.917 24 N -0.722 5.722 25 C 0.518 3.482 26 O -0.578 6.578 27 C -0.132 4.132 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.256 0.744 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.416 0.584 42 H 0.124 0.876 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -2.818 9.847 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.066 3.934 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.376 6.376 6 C -0.133 4.133 7 C 0.065 3.935 8 H 0.054 0.946 9 C -0.532 4.532 10 H 0.065 0.935 11 C -0.166 4.166 12 N -0.550 5.550 13 Si 0.758 3.242 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.200 1.200 17 C -0.047 4.047 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.166 4.166 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.042 4.042 24 N -0.376 5.376 25 C 0.306 3.694 26 O -0.459 6.459 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.255 0.745 42 H 0.142 0.858 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.007 -3.173 9.853 10.400 hybrid contribution 0.341 -0.770 -1.815 2.001 sum 1.348 -3.943 8.038 9.054 Atomic orbital electron populations 1.22320 0.90592 1.05407 1.04231 1.23047 0.95921 0.79242 0.95171 1.86597 1.69726 1.24016 1.47212 1.23863 0.78028 0.88954 0.78467 1.90674 1.34167 1.74770 1.38021 1.21548 1.02708 0.87907 1.01124 1.17668 0.97142 0.87702 0.91023 0.94581 1.20925 0.99211 1.35656 0.97378 0.93510 1.25388 0.95048 0.95810 1.00387 1.70024 1.12342 1.44147 1.28441 0.86050 0.77994 0.80024 0.80135 1.20090 1.21631 1.20018 1.20494 0.93427 0.96685 0.94054 1.21051 0.95695 0.96475 1.01446 1.21359 1.00211 0.92607 1.00468 1.21268 0.92652 0.99996 1.02639 1.21295 0.97142 0.95540 1.00674 1.21116 0.98716 0.93617 1.02330 1.22770 0.87573 0.96870 0.96948 1.46286 1.24926 1.58776 1.07627 1.21196 0.87404 0.78055 0.82744 1.90727 1.41992 1.49553 1.63585 1.22530 0.96660 1.00103 0.97791 0.91817 0.87768 0.89922 0.88106 0.88325 0.93548 0.86812 0.84450 0.84041 0.84972 0.88250 0.87142 0.91050 0.74483 0.85809 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 8.35 71.98 0.60 -2.97 16 2 C 0.10 2.49 1.01 -9.74 -0.01 2.48 16 3 O -0.36 -10.89 9.99 -51.40 -0.51 -11.40 16 4 C 0.46 17.14 6.85 71.24 0.49 17.62 16 5 O -0.49 -21.10 11.29 21.95 0.25 -20.85 16 6 C -0.10 -3.51 5.06 29.85 0.15 -3.36 16 7 C 0.08 3.81 1.67 -12.29 -0.02 3.79 16 8 H 0.04 1.91 6.98 -2.39 -0.02 1.89 16 9 C -0.49 -25.22 6.37 25.60 0.16 -25.06 16 10 H 0.05 2.37 7.82 -2.91 -0.02 2.35 16 11 C 0.03 1.81 5.45 84.65 0.46 2.28 16 12 N -0.91 -52.14 12.87 21.45 0.28 -51.87 16 13 Si 0.93 43.65 29.54 68.60 2.03 45.67 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 C -0.05 -1.95 4.77 -19.87 -0.09 -2.04 16 18 C -0.13 -4.86 8.86 22.27 0.20 -4.66 16 19 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 20 C -0.15 -4.46 10.05 22.27 0.22 -4.23 16 21 C -0.13 -4.30 10.05 22.27 0.22 -4.08 16 22 C -0.14 -5.65 9.67 22.27 0.22 -5.43 16 23 C 0.08 2.07 6.62 86.81 0.57 2.64 16 24 N -0.72 -17.32 6.24 -459.60 -2.87 -20.19 16 25 C 0.52 13.62 8.43 87.90 0.74 14.36 16 26 O -0.58 -19.53 18.03 -3.01 -0.05 -19.59 16 27 C -0.13 -2.56 6.18 30.59 0.19 -2.37 16 28 H 0.06 1.84 5.94 -2.39 -0.01 1.83 16 29 H 0.10 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 32 H 0.10 3.40 7.77 -2.39 -0.02 3.38 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.11 4.18 7.76 -2.92 -0.02 4.15 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.10 4.19 7.95 -2.91 -0.02 4.17 16 39 H 0.11 2.24 7.87 -2.39 -0.02 2.22 16 40 H 0.07 2.27 6.55 -2.39 -0.02 2.25 16 41 H 0.42 8.97 8.96 -92.71 -0.83 8.14 16 42 H 0.12 2.31 8.11 -2.39 -0.02 2.29 16 43 H 0.16 1.94 7.89 -2.38 -0.02 1.93 16 Total: -1.00 -68.91 359.21 3.64 -65.26 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.20 Total: 27.86 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 4.33 Total: -14.90 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -2.59 Total: -72.06 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.32 Total: -51.84 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.91 3.64 -65.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839001751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.092 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds