Wall clock time and date at job start Tue Mar 31 2020 11:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.47209 * 179.97438 * 260.53174 * 3 2 1 5 5 C 1.52991 * 109.47440 * 337.97733 * 4 3 2 6 6 H 1.09008 * 109.46833 * 55.00310 * 5 4 3 7 7 C 1.53000 * 109.47327 * 175.00026 * 5 4 3 8 8 O 1.42898 * 109.46738 * 54.99953 * 7 5 4 9 9 N 1.46498 * 109.47334 * 295.00259 * 5 4 3 10 10 C 1.34783 * 120.00022 * 154.99534 * 9 5 4 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 9 5 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 9 5 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31555 * 119.99681 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00028 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46922 * 89.99860 * 23 21 19 25 25 H 1.48498 * 109.47173 * 209.99865 * 23 21 19 26 26 H 1.48505 * 109.47159 * 330.00108 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 H 1.09007 * 109.47196 * 301.48288 * 1 2 3 29 29 H 1.08993 * 109.47759 * 61.48615 * 1 2 3 30 30 H 1.09009 * 109.47098 * 181.49128 * 1 2 3 31 31 H 1.09000 * 109.46495 * 217.97934 * 4 3 2 32 32 H 1.09002 * 109.46657 * 97.98560 * 4 3 2 33 33 H 1.08996 * 109.47219 * 175.00198 * 7 5 4 34 34 H 1.09003 * 109.47185 * 295.00467 * 7 5 4 35 35 H 0.96706 * 113.99510 * 179.97438 * 8 7 5 36 36 H 0.96997 * 119.99933 * 335.00053 * 9 5 4 37 37 H 1.08997 * 109.47091 * 60.00219 * 12 10 9 38 38 H 1.09003 * 109.47227 * 300.00670 * 12 10 9 39 39 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 40 40 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 41 41 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 42 42 H 0.97001 * 119.99674 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0013 0.0006 5 6 4.6285 -1.3356 0.5417 6 1 4.1946 -2.1512 -0.0368 7 6 6.1534 -1.3836 0.4265 8 8 6.7169 -0.2488 1.0874 9 7 4.2404 -1.4737 1.9476 10 6 4.1140 -2.6990 2.4946 11 8 4.3219 -3.6873 1.8230 12 6 3.7153 -2.8410 3.9409 13 6 3.6461 -4.3025 4.3017 14 6 2.4585 -4.9957 4.1520 15 6 2.3923 -6.3380 4.4773 16 6 3.5098 -6.9883 4.9631 17 6 4.7021 -6.2939 5.1197 18 8 5.8021 -6.9301 5.5974 19 6 5.6420 -8.2043 6.0084 20 1 4.6920 -8.6999 5.8737 21 6 6.6973 -8.8783 6.6040 22 7 6.5413 -10.1217 7.0045 23 14 8.3404 -8.0209 6.8376 24 1 8.3587 -7.3368 8.1554 25 1 9.4340 -9.0241 6.7853 26 1 8.5345 -7.0202 5.7576 27 6 4.7669 -4.9470 4.7869 28 1 -0.3634 0.5367 0.8764 29 1 -0.3634 0.4905 -0.9029 30 1 -0.3634 -1.0274 0.0267 31 1 4.4805 0.8116 0.6332 32 1 4.4816 0.1443 -1.0169 33 1 6.5244 -2.2966 0.8922 34 1 6.4389 -1.3702 -0.6253 35 1 7.6828 -0.2142 1.0547 36 1 4.0744 -0.6833 2.4848 37 1 2.7390 -2.3817 4.0955 38 1 4.4537 -2.3459 4.5717 39 1 1.5822 -4.4884 3.7762 40 1 1.4647 -6.8776 4.3555 41 1 3.4563 -8.0356 5.2214 42 1 7.2796 -10.5933 7.4208 43 1 5.6928 -4.4043 4.9072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844113401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:02 Heat of formation + Delta-G solvation = -48.242497 kcal Electronic energy + Delta-G solvation = -25316.351535 eV Core-core repulsion = 21521.506769 eV Total energy + Delta-G solvation = -3794.844766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.06288 -39.01190 -37.63897 -36.52747 -35.53889 -33.96996 -32.45240 -32.23311 -31.26587 -29.40592 -28.82388 -26.93115 -26.05266 -25.11274 -22.31283 -21.60828 -20.78877 -20.14994 -17.98790 -17.68539 -17.36158 -16.90764 -16.76333 -16.00166 -15.49241 -15.12017 -14.86723 -14.54554 -14.31624 -14.22218 -13.92293 -13.75608 -13.70221 -13.60164 -13.41843 -13.38082 -13.11033 -12.56515 -12.43722 -12.16686 -12.06966 -11.84171 -11.58653 -11.25823 -10.79599 -10.75916 -10.67396 -10.42044 -10.11916 -10.04615 -9.92639 -9.69150 -9.33788 -9.12978 -8.82400 -8.08488 -7.29941 -6.36334 -4.02797 2.07123 2.34749 2.45302 2.48862 2.76376 3.16596 3.25631 3.28297 3.44100 3.93357 3.98518 4.28209 4.50555 4.61049 4.78803 4.83783 4.98567 5.01540 5.09920 5.12834 5.21521 5.27074 5.29442 5.34523 5.36874 5.41267 5.49301 5.62358 5.69168 5.73471 5.76282 5.90191 6.17645 6.31132 6.38759 6.58870 6.84936 7.16109 7.27444 7.29791 7.37348 7.41411 7.49671 7.66988 7.86531 8.09913 8.31861 8.99377 9.62977 10.71635 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.002855 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.762620 B = 9806.081234 C =11136.974341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.188 4.188 3 C -0.190 4.190 4 C -0.007 4.007 5 C 0.155 3.845 6 H 0.102 0.898 7 C 0.062 3.938 8 O -0.571 6.571 9 N -0.724 5.724 10 C 0.516 3.484 11 O -0.523 6.523 12 C -0.094 4.094 13 C -0.034 4.034 14 C -0.188 4.188 15 C -0.076 4.076 16 C -0.218 4.218 17 C 0.160 3.840 18 O -0.220 6.220 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.882 5.882 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.174 4.174 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.380 0.620 36 H 0.401 0.599 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.278 0.722 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 23.046 -12.618 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.188 4.188 3 C -0.190 4.190 4 C -0.043 4.043 5 C 0.050 3.950 6 H 0.120 0.880 7 C -0.017 4.017 8 O -0.376 6.376 9 N -0.377 5.377 10 C 0.302 3.698 11 O -0.398 6.398 12 C -0.134 4.134 13 C -0.034 4.034 14 C -0.207 4.207 15 C -0.094 4.094 16 C -0.237 4.237 17 C 0.109 3.891 18 O -0.125 6.125 19 C -0.463 4.463 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.227 0.773 36 H 0.235 0.765 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.450 22.299 -12.867 26.541 hybrid contribution 1.150 0.284 0.243 1.209 sum -5.300 22.583 -12.624 26.409 Atomic orbital electron populations 1.18858 0.84758 1.03186 1.02868 1.22402 0.93924 1.00937 1.01511 1.22183 0.93485 1.01810 1.01532 1.18844 0.84507 0.98026 1.02967 1.20959 0.92371 0.97893 0.83757 0.87986 1.22668 0.93632 0.89139 0.96297 1.86414 1.25576 1.46154 1.79485 1.45962 1.71664 1.08521 1.11592 1.20751 0.76584 0.82679 0.89759 1.90750 1.48659 1.37332 1.63024 1.20580 1.03690 0.96176 0.92926 1.18661 0.93553 0.92780 0.98425 1.20417 0.96990 0.94975 1.08277 1.20731 0.97357 0.94093 0.97247 1.21291 0.93213 1.01499 1.07693 1.19006 0.86556 0.91076 0.92491 1.83570 1.30124 1.27805 1.71037 1.20766 1.01921 0.84823 1.38824 0.87669 1.24453 0.99131 0.95144 0.95319 1.69650 1.33418 1.09736 1.39247 0.86188 0.81711 0.79465 0.79577 1.19929 1.20839 1.18397 1.19933 0.98359 0.92515 1.08563 0.90227 0.90341 0.90098 0.88287 0.88432 0.92292 0.92655 0.77269 0.76488 0.88400 0.88249 0.87791 0.87203 0.85009 0.91147 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.27 10.32 34.37 0.35 0.09 16 2 C -0.19 -1.87 14.13 -37.13 -0.52 -2.40 16 3 C -0.19 -1.92 13.06 -37.12 -0.48 -2.40 16 4 C -0.01 -0.05 4.97 -29.52 -0.15 -0.20 16 5 C 0.16 1.53 2.34 -67.94 -0.16 1.38 16 6 H 0.10 1.20 7.58 -51.92 -0.39 0.80 16 7 C 0.06 0.55 6.85 37.16 0.25 0.80 16 8 O -0.57 -4.52 12.83 -35.23 -0.45 -4.97 16 9 N -0.72 -7.76 4.72 -53.81 -0.25 -8.01 16 10 C 0.52 7.37 7.79 -10.98 -0.09 7.29 16 11 O -0.52 -9.87 15.70 5.56 0.09 -9.78 16 12 C -0.09 -1.24 5.83 -29.04 -0.17 -1.41 16 13 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 14 C -0.19 -3.37 9.70 -39.54 -0.38 -3.76 16 15 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 16 C -0.22 -4.96 9.17 -39.39 -0.36 -5.32 16 17 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 18 O -0.22 -6.03 8.59 0.03 0.00 -6.03 16 19 C -0.39 -11.25 9.95 30.89 0.31 -10.95 16 20 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 21 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 22 N -0.88 -26.01 13.96 55.48 0.77 -25.23 16 23 Si 0.90 22.19 28.62 -169.99 -4.86 17.33 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.17 -3.67 9.65 -39.39 -0.38 -4.05 16 28 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.10 0.74 7.73 -51.93 -0.40 0.34 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.38 1.64 9.12 45.56 0.42 2.06 16 36 H 0.40 3.44 8.60 -40.82 -0.35 3.09 16 37 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 38 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.13 3.12 5.64 -52.48 -0.30 2.82 16 42 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -35.58 377.63 -7.10 -42.68 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.09 Total: 6.86 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.99 Total: -18.53 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.52 Total: -33.25 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.36 Total: -20.78 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.86 Total: 17.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.58 -7.10 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844113401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.567 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds